Wall clock time and date at job start Fri Apr 10 2020 15:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 Br 1.96606 * 115.54969 * 2 1 4 4 C 1.52998 * 117.52033 * 145.69923 * 2 1 3 5 5 C 1.52994 * 59.99984 * 107.48425 * 4 2 1 6 6 H 1.09001 * 117.52202 * 107.48580 * 5 4 2 7 7 C 1.53004 * 117.50054 * 252.51317 * 5 4 2 8 8 N 1.46901 * 109.47278 * 243.62404 * 7 5 4 9 9 C 1.46900 * 111.00046 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46791 * 184.10496 * 9 8 7 11 11 C 1.50696 * 115.54919 * 301.96077 * 10 9 8 12 12 H 1.07999 * 120.00066 * 99.55580 * 11 10 9 13 13 C 1.37883 * 120.00087 * 279.55618 * 11 10 9 14 14 N 1.31514 * 119.99885 * 356.99946 * 13 11 10 15 15 Si 1.86795 * 119.99779 * 176.99560 * 13 11 10 16 16 H 1.48504 * 109.47342 * 60.00100 * 15 13 11 17 17 H 1.48503 * 109.47470 * 300.00117 * 15 13 11 18 18 H 1.48503 * 109.47048 * 179.97438 * 15 13 11 19 19 C 1.52997 * 117.51944 * 87.66658 * 10 9 8 20 20 C 1.53002 * 60.00124 * 107.47983 * 19 10 9 21 21 H 1.09007 * 109.47192 * 205.67235 * 1 2 3 22 22 H 1.08996 * 109.47352 * 325.66640 * 1 2 3 23 23 H 1.09005 * 109.47318 * 85.67228 * 1 2 3 24 24 H 1.09004 * 117.50001 * 359.97438 * 4 2 1 25 25 H 1.08997 * 117.50173 * 214.97217 * 4 2 1 26 26 H 1.08997 * 109.47352 * 123.61867 * 7 5 4 27 27 H 1.09001 * 109.46639 * 3.61957 * 7 5 4 28 28 H 1.00893 * 111.00168 * 56.03764 * 8 7 5 29 29 H 1.09000 * 109.47308 * 64.10284 * 9 8 7 30 30 H 1.09000 * 109.46895 * 304.09788 * 9 8 7 31 31 H 0.96993 * 119.99977 * 5.85351 * 14 13 11 32 32 H 1.09001 * 117.49545 * 214.96566 * 19 10 9 33 33 H 1.08997 * 117.49823 * 359.97438 * 19 10 9 34 34 H 1.09005 * 117.49747 * 252.51647 * 20 19 10 35 35 H 1.08991 * 117.49997 * 107.48916 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 35 2.3779 1.7738 0.0000 4 6 2.2369 -1.1209 0.7646 5 6 2.2365 -1.1207 -0.7653 6 1 3.1711 -0.8745 -1.2692 7 6 1.3589 -2.1560 -1.4717 8 7 2.2081 -3.0727 -2.2440 9 6 1.3977 -4.0825 -2.9379 10 6 2.3195 -5.0774 -3.6460 11 6 3.2719 -4.4802 -4.6496 12 1 4.3002 -4.2964 -4.3752 13 6 2.8306 -4.1683 -5.9181 14 7 1.5947 -4.4463 -6.2712 15 14 3.9884 -3.3510 -7.1350 16 1 5.1617 -4.2306 -7.3695 17 1 4.4471 -2.0501 -6.5848 18 1 3.2770 -3.1230 -8.4185 19 6 2.8053 -6.2859 -2.8432 20 6 1.7597 -6.4696 -3.9450 21 1 -0.3634 -0.9263 0.4452 22 1 -0.3634 0.8486 0.5796 23 1 -0.3634 0.0776 -1.0248 24 1 1.6120 -1.8585 1.2683 25 1 3.1720 -0.8749 1.2677 26 1 0.6673 -1.6481 -2.1439 27 1 0.7951 -2.7212 -0.7296 28 1 2.9009 -3.5078 -1.6535 29 1 0.7583 -3.5931 -3.6726 30 1 0.7793 -4.6124 -2.2135 31 1 0.9691 -4.7920 -5.6155 32 1 3.8138 -6.6489 -3.0410 33 1 2.4686 -6.3721 -1.8102 34 1 0.7349 -6.6768 -3.6368 35 1 2.0804 -6.9535 -4.8675 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894197665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:07 Heat of formation + Delta-G solvation = 39.856715 kcal Electronic energy + Delta-G solvation = -15399.936499 eV Core-core repulsion = 12866.271277 eV Total energy + Delta-G solvation = -2533.665222 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 287.058 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.57678 -37.13630 -33.96758 -31.75597 -30.14685 -28.75698 -27.01693 -24.78023 -23.32000 -21.41163 -21.14241 -19.57771 -18.93443 -16.65545 -16.01131 -14.97144 -14.36387 -14.06664 -13.79877 -13.64515 -13.32805 -12.86372 -12.75659 -12.23083 -12.08024 -11.79789 -11.46217 -11.09106 -10.89127 -10.79550 -10.68318 -10.42001 -10.35686 -10.02853 -9.79067 -9.57198 -9.35520 -8.55647 -8.43447 -8.12826 -7.65730 -6.21161 -3.92764 1.51887 3.37807 3.50764 3.54812 3.71418 4.29054 4.45571 4.61490 4.61894 4.94664 5.23504 5.31926 5.43387 5.46544 5.49590 5.53707 5.61365 5.72335 5.87116 5.91585 6.04410 6.12488 6.24630 6.30424 6.37344 6.55248 6.69033 6.89214 7.27101 7.28459 7.81529 8.05436 8.38998 8.54392 9.00247 9.79175 11.17916 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.004311 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.616221 B = 6493.187224 C = 7300.643524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 Br -0.124 7.124 4 C -0.156 4.156 5 C -0.111 4.111 6 H 0.126 0.874 7 C 0.090 3.910 8 N -0.661 5.661 9 C 0.104 3.896 10 C 0.025 3.975 11 C -0.545 4.545 12 H 0.050 0.950 13 C 0.026 3.974 14 N -0.914 5.914 15 Si 1.065 2.935 16 H -0.291 1.291 17 H -0.287 1.287 18 H -0.285 1.285 19 C -0.200 4.200 20 C -0.181 4.181 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.022 0.978 28 H 0.336 0.664 29 H 0.067 0.933 30 H -0.003 1.003 31 H 0.272 0.728 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 9.636 15.250 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.172 4.172 3 Br -0.042 7.042 4 C -0.194 4.194 5 C -0.131 4.131 6 H 0.144 0.856 7 C -0.040 4.040 8 N -0.291 5.291 9 C -0.025 4.025 10 C 0.025 3.975 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.179 4.179 14 N -0.549 5.549 15 Si 0.894 3.106 16 H -0.218 1.218 17 H -0.214 1.214 18 H -0.211 1.211 19 C -0.238 4.238 20 C -0.219 4.219 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.040 0.960 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.015 0.985 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.186 11.203 13.113 17.287 hybrid contribution -0.564 -1.412 2.441 2.876 sum -1.750 9.791 15.554 18.462 Atomic orbital electron populations 1.21463 0.89321 1.02835 1.03319 1.24911 0.96236 0.84940 1.11121 1.97331 1.82160 1.25578 1.99148 1.23572 1.02187 0.98281 0.95398 1.22865 1.01384 0.95810 0.93017 0.85588 1.21513 0.94261 0.93171 0.95096 1.60183 1.15690 1.21535 1.31690 1.21565 0.94107 0.91984 0.94802 1.19166 0.96798 0.85018 0.96557 1.21095 0.95811 1.44099 0.97250 0.93141 1.25660 0.99046 0.95376 0.97788 1.70736 1.04957 1.41640 1.37606 0.83599 0.74698 0.76361 0.75896 1.21791 1.21368 1.21083 1.22853 0.98578 1.08220 0.94114 1.22774 0.95535 1.04658 0.98959 0.91077 0.91347 0.90946 0.87757 0.87768 0.90675 0.95994 0.84695 0.91430 0.98507 0.91741 0.90226 0.91968 0.91855 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 8.92 37.16 0.33 -0.79 16 2 C -0.09 -1.09 3.11 -90.63 -0.28 -1.37 16 3 Br -0.12 -1.49 33.93 -68.01 -2.31 -3.80 16 4 C -0.16 -1.67 9.64 -26.73 -0.26 -1.92 16 5 C -0.11 -1.46 5.77 -90.62 -0.52 -1.98 16 6 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 7 C 0.09 1.35 5.04 -3.82 -0.02 1.34 16 8 N -0.66 -12.59 6.29 -113.78 -0.72 -13.30 16 9 C 0.10 2.24 5.50 -3.82 -0.02 2.22 16 10 C 0.03 0.61 1.07 -155.66 -0.17 0.44 16 11 C -0.54 -14.88 8.58 -34.44 -0.30 -15.17 16 12 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 13 C 0.03 0.72 5.44 -17.82 -0.10 0.62 16 14 N -0.91 -26.97 13.54 55.43 0.75 -26.22 16 15 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 C -0.20 -4.27 9.94 -26.73 -0.27 -4.53 16 20 C -0.18 -4.15 8.73 -26.73 -0.23 -4.38 16 21 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 22 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 23 H 0.07 0.76 7.83 -51.93 -0.41 0.36 16 24 H 0.10 1.00 7.94 -51.93 -0.41 0.58 16 25 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 1.20 7.77 -51.93 -0.40 0.80 16 27 H 0.02 0.31 7.88 -51.93 -0.41 -0.10 16 28 H 0.34 6.11 8.68 -39.30 -0.34 5.77 16 29 H 0.07 1.62 7.79 -51.93 -0.40 1.21 16 30 H 0.00 -0.06 8.10 -51.93 -0.42 -0.48 16 31 H 0.27 7.91 6.14 -40.82 -0.25 7.66 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -28.77 311.54 -10.11 -38.88 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.62 Total: 4.93 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -1.83 Total: -25.52 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.03 Total: -39.52 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -2.31 Total: -3.80 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.77 -10.11 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894197665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.738 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds