Wall clock time and date at job start Fri Apr 10 2020 15:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46684 * 2 1 4 4 N 1.46904 * 109.46761 * 120.00019 * 2 1 3 5 5 C 1.46904 * 110.99787 * 274.99914 * 4 2 1 6 6 C 1.52999 * 109.46646 * 185.19547 * 5 4 2 7 7 C 1.50699 * 115.55445 * 297.13794 * 6 5 4 8 8 H 1.08000 * 119.99679 * 95.21041 * 7 6 5 9 9 C 1.37883 * 120.00138 * 275.22254 * 7 6 5 10 10 N 1.31514 * 119.99876 * 7.09318 * 9 7 6 11 11 Si 1.86794 * 120.00059 * 187.09580 * 9 7 6 12 12 H 1.48496 * 109.47468 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.47052 * 299.99863 * 11 9 7 14 14 H 1.48507 * 109.47223 * 59.99305 * 11 9 7 15 15 C 1.53003 * 117.49863 * 82.81338 * 6 5 4 16 16 C 1.53001 * 117.49730 * 151.47248 * 6 5 4 17 17 C 1.52993 * 109.46976 * 240.00213 * 2 1 3 18 18 Br 1.96608 * 115.54776 * 279.32629 * 17 2 1 19 19 C 1.52998 * 117.50024 * 133.62387 * 17 2 1 20 20 C 1.52992 * 59.99935 * 252.50778 * 19 17 2 21 21 H 1.09001 * 109.47270 * 299.99925 * 1 2 3 22 22 H 1.08995 * 109.47341 * 59.99922 * 1 2 3 23 23 H 1.09000 * 109.47203 * 179.97438 * 1 2 3 24 24 H 1.00891 * 111.00013 * 38.95694 * 4 2 1 25 25 H 1.09000 * 109.47248 * 65.19800 * 5 4 2 26 26 H 1.09000 * 109.47262 * 305.19227 * 5 4 2 27 27 H 0.97006 * 119.99734 * 355.40076 * 10 9 7 28 28 H 1.09006 * 117.49442 * 214.99775 * 15 6 5 29 29 H 1.08996 * 117.49999 * 0.02562 * 15 6 5 30 30 H 1.09005 * 117.50024 * 359.97296 * 16 6 5 31 31 H 1.09000 * 117.50409 * 144.97210 * 16 6 5 32 32 H 1.09001 * 117.49970 * 359.97438 * 19 17 2 33 33 H 1.09007 * 117.50023 * 145.01464 * 19 17 2 34 34 H 1.09009 * 117.49716 * 252.51165 * 20 19 17 35 35 H 1.08997 * 117.50340 * 107.49049 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.7162 -0.4971 3.5391 7 6 1.9537 -1.6883 4.0596 8 1 2.2082 -2.6819 3.7216 9 6 0.9311 -1.5094 4.9670 10 7 0.5280 -0.2955 5.2726 11 14 0.1184 -2.9914 5.7623 12 1 -0.9439 -2.5332 6.6933 13 1 -0.4817 -3.8508 4.7103 14 1 1.1351 -3.7685 6.5159 15 6 4.2439 -0.5553 3.5984 16 6 3.4745 0.3562 4.5577 17 6 2.0400 -0.7212 -1.2492 18 35 2.0516 -2.6847 -1.1494 19 6 3.1582 -0.0474 -2.0470 20 6 1.7348 -0.0846 -2.6065 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4496 -1.4979 1.4100 25 1 1.0749 0.5445 2.6105 26 1 2.6850 1.0924 2.0855 27 1 0.9932 0.4753 4.9114 28 1 4.6975 -1.4553 4.0139 29 1 4.7975 -0.0805 2.7884 30 1 3.5223 1.4303 4.3784 31 1 3.4217 0.0564 5.6043 32 1 3.5304 0.9100 -1.6820 33 1 3.9008 -0.6927 -2.5165 34 1 1.5407 -0.7545 -3.4444 35 1 1.1706 0.8480 -2.6096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926345467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:39 Heat of formation + Delta-G solvation = 40.908306 kcal Electronic energy + Delta-G solvation = -15885.459313 eV Core-core repulsion = 13351.839692 eV Total energy + Delta-G solvation = -2533.619622 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 287.058 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.38925 -36.90295 -34.30354 -31.80713 -29.66944 -29.36090 -25.33939 -24.57102 -22.72476 -22.39758 -21.10463 -19.72832 -18.99790 -16.48348 -15.78324 -15.21037 -14.24455 -13.94618 -13.90668 -13.70149 -12.82494 -12.56872 -12.32327 -12.02462 -11.81580 -11.51325 -11.41571 -10.87936 -10.85842 -10.78238 -10.59405 -10.53699 -10.30492 -10.09346 -9.58741 -9.40303 -9.22958 -8.45923 -8.31782 -8.23505 -7.58038 -6.30097 -4.02803 1.89553 3.45204 3.46937 3.55994 3.65094 4.38678 4.54235 4.70460 4.78834 5.04538 5.38576 5.40200 5.43031 5.48304 5.53981 5.59423 5.76958 5.96789 5.98497 6.02388 6.10133 6.32608 6.34580 6.46000 6.61373 6.70394 6.75055 6.98561 7.33764 7.37388 7.88198 8.21635 8.37236 8.50638 8.94582 9.71589 11.08865 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.006259 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.211712 B = 4472.190219 C = 4911.745227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.121 3.879 3 H 0.081 0.919 4 N -0.665 5.665 5 C 0.102 3.898 6 C 0.031 3.969 7 C -0.567 4.567 8 H 0.053 0.947 9 C 0.026 3.974 10 N -0.908 5.908 11 Si 1.063 2.937 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.289 1.289 15 C -0.183 4.183 16 C -0.187 4.187 17 C -0.068 4.068 18 Br -0.109 7.109 19 C -0.153 4.153 20 C -0.162 4.162 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.357 0.643 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.274 0.726 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 0.409 -15.450 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.009 3.991 3 H 0.099 0.901 4 N -0.297 5.297 5 C -0.027 4.027 6 C 0.030 3.970 7 C -0.605 4.605 8 H 0.071 0.929 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.891 3.109 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.215 1.215 15 C -0.220 4.220 16 C -0.225 4.225 17 C -0.146 4.146 18 Br -0.027 7.027 19 C -0.191 4.191 20 C -0.201 4.201 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.178 0.822 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.257 -0.651 -14.511 14.580 hybrid contribution 0.387 0.970 -0.803 1.317 sum 1.644 0.318 -15.314 15.405 Atomic orbital electron populations 1.22495 0.96827 1.02781 1.01877 1.21047 0.92591 0.96236 0.89241 0.90097 1.60458 1.56849 1.09769 1.02587 1.21533 0.98168 0.92928 0.90037 1.18991 0.89199 0.96438 0.92332 1.21291 1.19723 0.91861 1.27620 0.92880 1.25720 0.95201 1.02062 0.94973 1.70742 1.39293 0.98588 1.45730 0.83630 0.76198 0.74545 0.76478 1.20979 1.21460 1.21514 1.22735 0.97342 1.00763 1.01208 1.22788 1.08166 0.94760 0.96800 1.24943 1.07208 0.86968 0.95478 1.97303 1.99107 1.07201 1.99125 1.23273 0.91779 1.02338 1.01688 1.23316 0.99131 1.02615 0.95045 0.91926 0.92717 0.91927 0.82193 0.95425 0.94393 0.91497 0.90640 0.91547 0.91934 0.90102 0.87879 0.87982 0.87934 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 9.05 37.16 0.34 -2.35 16 2 C 0.12 1.87 2.65 -67.71 -0.18 1.69 16 3 H 0.08 1.21 7.52 -51.93 -0.39 0.82 16 4 N -0.66 -12.86 5.60 -106.72 -0.60 -13.45 16 5 C 0.10 2.22 5.29 -3.82 -0.02 2.19 16 6 C 0.03 0.76 1.14 -155.66 -0.18 0.58 16 7 C -0.57 -15.40 8.24 -34.44 -0.28 -15.68 16 8 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.03 0.71 5.39 -17.82 -0.10 0.62 16 10 N -0.91 -26.40 13.57 55.43 0.75 -25.65 16 11 Si 1.06 24.94 29.91 -169.99 -5.08 19.85 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 C -0.18 -4.11 9.96 -26.69 -0.27 -4.38 16 16 C -0.19 -4.37 8.73 -26.69 -0.23 -4.60 16 17 C -0.07 -0.92 2.29 -90.63 -0.21 -1.13 16 18 Br -0.11 -1.64 32.91 -68.01 -2.24 -3.88 16 19 C -0.15 -1.74 9.99 -26.74 -0.27 -2.01 16 20 C -0.16 -1.70 9.63 -26.74 -0.26 -1.96 16 21 H 0.06 1.02 7.55 -51.93 -0.39 0.63 16 22 H 0.05 0.67 7.64 -51.93 -0.40 0.28 16 23 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 24 H 0.36 7.61 7.53 -39.30 -0.30 7.31 16 25 H 0.03 0.65 7.26 -51.93 -0.38 0.27 16 26 H 0.04 0.77 7.89 -51.93 -0.41 0.36 16 27 H 0.27 7.89 6.20 -40.82 -0.25 7.64 16 28 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 32 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.10 0.96 7.93 -51.93 -0.41 0.55 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -28.19 308.06 -9.69 -37.88 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.51 Total: 7.63 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -1.65 Total: -27.02 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.15 Total: -39.10 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Atomic # 35 Polarization: -1.64 SS G_CDS: -2.24 Total: -3.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.19 -9.69 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926345467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.788 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds