Wall clock time and date at job start Fri Apr 10 2020 15:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46684 * 2 1 4 4 N 1.46904 * 109.46761 * 120.00019 * 2 1 3 5 5 C 1.46904 * 110.99787 * 274.99914 * 4 2 1 6 6 C 1.52999 * 109.46646 * 185.19547 * 5 4 2 7 7 C 1.50699 * 115.55445 * 297.13794 * 6 5 4 8 8 H 1.08000 * 119.99679 * 95.21041 * 7 6 5 9 9 C 1.37883 * 120.00138 * 275.22254 * 7 6 5 10 10 N 1.31514 * 119.99876 * 7.09318 * 9 7 6 11 11 Si 1.86794 * 120.00059 * 187.09580 * 9 7 6 12 12 H 1.48496 * 109.47468 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.47052 * 299.99863 * 11 9 7 14 14 H 1.48507 * 109.47223 * 59.99305 * 11 9 7 15 15 C 1.53003 * 117.49863 * 82.81338 * 6 5 4 16 16 C 1.53001 * 117.49730 * 151.47248 * 6 5 4 17 17 C 1.52993 * 109.46976 * 240.00213 * 2 1 3 18 18 Br 1.96608 * 115.54776 * 279.32629 * 17 2 1 19 19 C 1.52998 * 117.50024 * 133.62387 * 17 2 1 20 20 C 1.52992 * 59.99935 * 252.50778 * 19 17 2 21 21 H 1.09001 * 109.47270 * 299.99925 * 1 2 3 22 22 H 1.08995 * 109.47341 * 59.99922 * 1 2 3 23 23 H 1.09000 * 109.47203 * 179.97438 * 1 2 3 24 24 H 1.00891 * 111.00013 * 38.95694 * 4 2 1 25 25 H 1.09000 * 109.47248 * 65.19800 * 5 4 2 26 26 H 1.09000 * 109.47262 * 305.19227 * 5 4 2 27 27 H 0.97006 * 119.99734 * 355.40076 * 10 9 7 28 28 H 1.09006 * 117.49442 * 214.99775 * 15 6 5 29 29 H 1.08996 * 117.49999 * 0.02562 * 15 6 5 30 30 H 1.09005 * 117.50024 * 359.97296 * 16 6 5 31 31 H 1.09000 * 117.50409 * 144.97210 * 16 6 5 32 32 H 1.09001 * 117.49970 * 359.97438 * 19 17 2 33 33 H 1.09007 * 117.50023 * 145.01464 * 19 17 2 34 34 H 1.09009 * 117.49716 * 252.51165 * 20 19 17 35 35 H 1.08997 * 117.50340 * 107.49049 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.7162 -0.4971 3.5391 7 6 1.9537 -1.6883 4.0596 8 1 2.2082 -2.6819 3.7216 9 6 0.9311 -1.5094 4.9670 10 7 0.5280 -0.2955 5.2726 11 14 0.1184 -2.9914 5.7623 12 1 -0.9439 -2.5332 6.6933 13 1 -0.4817 -3.8508 4.7103 14 1 1.1351 -3.7685 6.5159 15 6 4.2439 -0.5553 3.5984 16 6 3.4745 0.3562 4.5577 17 6 2.0400 -0.7212 -1.2492 18 35 2.0516 -2.6847 -1.1494 19 6 3.1582 -0.0474 -2.0470 20 6 1.7348 -0.0846 -2.6065 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4496 -1.4979 1.4100 25 1 1.0749 0.5445 2.6105 26 1 2.6850 1.0924 2.0855 27 1 0.9932 0.4753 4.9114 28 1 4.6975 -1.4553 4.0139 29 1 4.7975 -0.0805 2.7884 30 1 3.5223 1.4303 4.3784 31 1 3.4217 0.0564 5.6043 32 1 3.5304 0.9100 -1.6820 33 1 3.9008 -0.6927 -2.5165 34 1 1.5407 -0.7545 -3.4444 35 1 1.1706 0.8480 -2.6096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926345467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:38 Heat of formation + Delta-G solvation = 25.820902 kcal Electronic energy + Delta-G solvation = -15886.113552 eV Core-core repulsion = 13351.839692 eV Total energy + Delta-G solvation = -2534.273861 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 287.058 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65666 -38.53389 -35.66843 -33.89748 -30.79798 -30.69232 -27.17530 -26.33846 -24.00607 -23.27926 -22.95325 -21.42353 -20.37365 -18.42439 -16.88081 -16.58597 -15.90827 -15.61451 -15.42564 -15.21866 -14.36655 -14.25708 -13.90705 -13.51788 -13.06858 -12.92237 -12.65973 -12.56759 -12.40421 -12.17205 -12.01636 -11.96716 -11.85926 -11.58410 -11.31329 -10.63754 -10.43245 -10.36106 -10.30049 -10.13818 -9.13423 -8.48345 -6.20841 0.85906 1.54049 1.60004 1.79051 2.58661 2.61318 3.12116 3.27720 3.49024 3.73313 3.76611 3.99517 4.16365 4.27154 4.36333 4.47409 4.53763 4.58173 4.69044 4.74191 4.79692 4.90261 4.93734 4.94797 4.98129 5.12270 5.17018 5.21164 5.49065 5.53761 6.23657 6.32797 6.34185 6.58486 6.80569 7.58746 8.91327 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.006259 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.211712 B = 4472.190219 C = 4911.745227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.121 3.879 3 H 0.091 0.909 4 N -0.666 5.666 5 C 0.118 3.882 6 C 0.006 3.994 7 C -0.572 4.572 8 H 0.038 0.962 9 C -0.017 4.017 10 N -0.932 5.932 11 Si 1.102 2.898 12 H -0.287 1.287 13 H -0.275 1.275 14 H -0.278 1.278 15 C -0.165 4.165 16 C -0.187 4.187 17 C -0.092 4.092 18 Br -0.132 7.132 19 C -0.146 4.146 20 C -0.136 4.136 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.343 0.657 25 H 0.000 1.000 26 H 0.054 0.946 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 0.863 -17.171 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 H 0.109 0.891 4 N -0.297 5.297 5 C -0.012 4.012 6 C 0.006 3.994 7 C -0.610 4.610 8 H 0.056 0.944 9 C -0.217 4.217 10 N -0.569 5.569 11 Si 0.926 3.074 12 H -0.212 1.212 13 H -0.200 1.200 14 H -0.204 1.204 15 C -0.203 4.203 16 C -0.225 4.225 17 C -0.170 4.170 18 Br -0.051 7.051 19 C -0.184 4.184 20 C -0.175 4.175 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.069 0.931 24 H 0.162 0.838 25 H 0.018 0.982 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.649 -0.190 -16.258 16.343 hybrid contribution 0.319 0.856 -0.316 0.967 sum 1.967 0.666 -16.574 16.704 Atomic orbital electron populations 1.22409 0.96517 1.02105 1.02238 1.21126 0.92910 0.96594 0.88372 0.89143 1.60467 1.57097 1.09185 1.02906 1.21264 0.96526 0.93383 0.89998 1.19131 0.90255 0.96367 0.93692 1.21489 1.19835 0.92277 1.27372 0.94396 1.26839 0.95994 1.03446 0.95447 1.70839 1.40126 0.98958 1.46970 0.83104 0.75722 0.72411 0.76149 1.21243 1.20022 1.20356 1.22711 0.96208 1.00223 1.01114 1.22713 1.08426 0.95893 0.95472 1.24889 1.10382 0.85578 0.96132 1.97294 1.99188 1.09413 1.99165 1.23382 0.92173 1.02290 1.00596 1.23451 0.98333 1.02806 0.92905 0.94094 0.89714 0.93114 0.83812 0.98162 0.92787 0.92408 0.91350 0.89258 0.90040 0.92490 0.86973 0.87572 0.86833 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 9.05 71.98 0.65 -4.31 16 2 C 0.12 3.55 2.65 44.91 0.12 3.67 16 3 H 0.09 2.48 7.52 -2.39 -0.02 2.46 16 4 N -0.67 -25.35 5.60 -491.55 -2.75 -28.10 16 5 C 0.12 5.05 5.29 86.30 0.46 5.51 16 6 C 0.01 0.30 1.14 -52.93 -0.06 0.24 16 7 C -0.57 -31.41 8.24 25.60 0.21 -31.19 16 8 H 0.04 2.15 7.82 -2.91 -0.02 2.13 16 9 C -0.02 -0.96 5.39 84.66 0.46 -0.50 16 10 N -0.93 -55.03 13.57 21.45 0.29 -54.73 16 11 Si 1.10 50.55 29.91 68.60 2.05 52.60 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 15 C -0.17 -7.24 9.96 30.62 0.30 -6.93 16 16 C -0.19 -8.67 8.73 30.62 0.27 -8.40 16 17 C -0.09 -2.30 2.29 -10.80 -0.02 -2.32 16 18 Br -0.13 -3.85 32.91 -20.37 -0.67 -4.52 16 19 C -0.15 -2.88 9.99 30.59 0.31 -2.57 16 20 C -0.14 -2.36 9.63 30.59 0.29 -2.07 16 21 H 0.04 1.33 7.55 -2.39 -0.02 1.31 16 22 H 0.08 1.87 7.64 -2.39 -0.02 1.85 16 23 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 24 H 0.34 14.73 7.53 -89.70 -0.68 14.05 16 25 H 0.00 0.01 7.26 -2.39 -0.02 -0.01 16 26 H 0.05 2.11 7.89 -2.39 -0.02 2.09 16 27 H 0.27 15.63 6.20 -92.70 -0.57 15.06 16 28 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 29 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 31 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.11 2.02 8.08 -2.39 -0.02 2.00 16 33 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.12 1.70 7.93 -2.39 -0.02 1.68 16 Total: -1.00 -60.54 308.06 2.48 -58.06 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.58 Total: 25.57 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 2.98 Total: -48.87 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.46 Total: -82.84 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.05 Total: 52.60 kcal Atomic # 35 Polarization: -3.85 SS G_CDS: -0.67 Total: -4.52 kcal Total: -60.54 2.48 -58.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926345467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.878 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds