Wall clock time and date at job start Fri Apr 10 2020 15:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76204 * 100.00025 * 2 1 4 4 N 1.32561 * 119.21598 * 0.02562 * 3 2 1 5 5 C 1.32293 * 120.76840 * 179.68397 * 4 3 2 6 6 C 1.38539 * 119.21995 * 0.56279 * 5 4 3 7 7 C 1.50703 * 120.72000 * 179.71879 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72227 * 7 6 5 9 9 C 1.46902 * 111.00255 * 293.95458 * 8 7 6 10 10 C 1.46901 * 111.00103 * 169.99758 * 8 7 6 11 11 C 1.50696 * 109.47399 * 190.00043 * 10 8 7 12 12 H 1.08005 * 119.99725 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00189 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99790 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47047 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47167 * 119.99895 * 15 13 11 18 18 H 1.48495 * 109.47058 * 239.99959 * 15 13 11 19 19 C 1.38801 * 118.55694 * 359.44689 * 6 5 4 20 20 Cl 1.73602 * 120.41133 * 180.29375 * 19 6 5 21 21 N 1.32382 * 119.17267 * 0.27758 * 19 6 5 22 22 H 1.09000 * 109.46898 * 59.99779 * 1 2 3 23 23 H 1.08998 * 109.46907 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47167 * 299.99833 * 1 2 3 25 25 H 1.08004 * 120.38697 * 180.30196 * 5 4 3 26 26 H 1.09002 * 109.47152 * 139.72314 * 7 6 5 27 27 H 1.09001 * 109.46980 * 19.72414 * 7 6 5 28 28 H 1.09005 * 109.46528 * 59.99744 * 9 8 7 29 29 H 1.09000 * 109.46785 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47044 * 300.00388 * 9 8 7 31 31 H 1.08998 * 109.47407 * 310.00536 * 10 8 7 32 32 H 1.09007 * 109.46608 * 69.99971 * 10 8 7 33 33 H 0.96994 * 119.99598 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0889 2.5734 0.0005 5 6 1.2833 3.8819 0.0068 6 6 2.5786 4.3733 0.0010 7 6 2.8389 5.8577 0.0015 8 7 3.1601 6.2990 -1.3623 9 6 4.4320 5.7213 -1.8167 10 6 3.1872 7.7652 -1.4486 11 6 3.2741 8.1818 -2.8942 12 1 3.3056 7.4323 -3.6712 13 6 3.3133 9.5198 -3.2249 14 7 3.2745 10.4324 -2.2787 15 14 3.4203 10.0362 -5.0169 16 1 3.4495 8.8277 -5.8794 17 1 2.2380 10.8648 -5.3647 18 1 4.6590 10.8267 -5.2311 19 6 3.6314 3.4688 0.0005 20 17 5.2736 4.0317 0.0010 21 7 3.3675 2.1715 0.0000 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.4420 4.5592 0.0121 26 1 3.6772 6.0794 0.6620 27 1 1.9505 6.3822 0.3534 28 1 4.3603 4.6336 -1.8090 29 1 4.6455 6.0639 -2.8292 30 1 5.2337 6.0373 -1.1492 31 1 2.2774 8.1720 -1.0073 32 1 4.0544 8.1449 -0.9082 33 1 3.3025 11.3736 -2.5114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142408645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:33 Heat of formation + Delta-G solvation = 58.234770 kcal Electronic energy + Delta-G solvation = -18051.431448 eV Core-core repulsion = 15072.203372 eV Total energy + Delta-G solvation = -2979.228076 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09427 -37.34516 -36.50231 -33.80371 -33.12922 -31.94322 -29.20958 -27.58613 -27.08140 -24.88580 -24.48477 -22.50707 -20.40151 -18.86694 -18.13405 -16.54220 -15.95686 -15.75805 -14.93575 -14.65542 -14.47940 -14.36744 -14.07069 -13.80492 -13.56897 -12.95272 -12.83003 -12.54261 -12.11458 -11.84713 -11.35532 -11.30424 -11.10340 -10.84463 -10.75100 -10.67373 -10.56027 -10.18682 -10.00533 -9.56119 -9.49012 -9.25650 -8.48860 -7.95653 -7.35502 -6.07917 -4.09137 0.55023 0.81560 0.93810 1.64287 1.92713 3.28335 3.35970 3.38707 3.41779 4.06891 4.38165 4.40408 4.64493 4.78027 4.91896 4.97848 5.05505 5.25035 5.29445 5.57744 5.84048 5.90977 6.04829 6.07835 6.29702 6.58737 6.71931 7.16483 7.24931 7.57901 7.71857 7.96290 8.08201 8.44197 8.98374 9.55350 11.02972 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.003962 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.845418 B = 7065.328581 C = 7522.560458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S 0.003 5.997 3 C 0.299 3.701 4 N -0.521 5.521 5 C 0.188 3.812 6 C -0.150 4.150 7 C 0.094 3.906 8 N -0.532 5.532 9 C 0.027 3.973 10 C 0.193 3.807 11 C -0.507 4.507 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.234 3.766 20 Cl 0.002 6.998 21 N -0.499 5.499 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.091 0.909 25 H 0.184 0.816 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.020 0.980 31 H 0.032 0.968 32 H -0.006 1.006 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 -17.354 7.259 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.235 5.765 3 C -0.076 4.076 4 N -0.239 5.239 5 C 0.019 3.981 6 C -0.159 4.159 7 C -0.036 4.036 8 N -0.257 5.257 9 C -0.122 4.122 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.058 3.942 20 Cl 0.031 6.969 21 N -0.217 5.217 22 H 0.111 0.889 23 H 0.124 0.876 24 H 0.110 0.890 25 H 0.201 0.799 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.012 0.988 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.321 -19.264 6.963 20.751 hybrid contribution 0.278 2.814 -0.456 2.864 sum -3.042 -16.450 6.507 17.950 Atomic orbital electron populations 1.23576 0.93995 1.06304 1.07435 1.85801 1.06890 0.92981 1.90795 1.24779 0.85860 1.00776 0.96234 1.68735 1.33960 1.04521 1.16657 1.23219 0.95930 0.90730 0.88182 1.21523 0.93385 0.99134 1.01896 1.20963 1.01882 0.87400 0.93310 1.62266 1.32113 1.13495 1.17776 1.22873 0.89953 0.97846 1.01492 1.19781 0.96425 0.79187 0.97780 1.21167 1.49857 0.91571 0.91974 0.91788 1.24973 0.95391 0.96551 0.97614 1.69959 1.50960 1.00738 1.32111 0.86447 0.77565 0.78599 0.84866 1.19655 1.20963 1.21083 1.22003 0.88641 0.89340 0.94246 1.98443 1.16882 1.86215 1.95356 1.67824 1.22125 1.15397 1.16385 0.88909 0.87602 0.89020 0.79914 0.93541 0.89267 0.93498 0.90903 0.96144 0.94972 0.98773 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.62 101.05 0.97 -0.15 16 2 S 0.00 0.03 22.89 -107.50 -2.46 -2.43 16 3 C 0.30 4.31 7.85 -90.85 -0.71 3.60 16 4 N -0.52 -7.17 9.14 -13.46 -0.12 -7.29 16 5 C 0.19 2.55 10.96 -17.24 -0.19 2.36 16 6 C -0.15 -2.30 5.18 -104.30 -0.54 -2.84 16 7 C 0.09 1.56 4.98 -4.98 -0.02 1.54 16 8 N -0.53 -11.02 4.74 -245.82 -1.17 -12.18 16 9 C 0.03 0.52 7.50 60.07 0.45 0.97 16 10 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 11 C -0.51 -13.91 8.46 -34.44 -0.29 -14.20 16 12 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 15 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.23 3.70 6.24 -17.11 -0.11 3.59 16 20 Cl 0.00 0.03 22.98 -51.86 -1.19 -1.16 16 21 N -0.50 -7.94 10.40 -10.54 -0.11 -8.05 16 22 H 0.09 0.77 8.11 -51.92 -0.42 0.35 16 23 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.09 0.72 8.11 -51.91 -0.42 0.30 16 25 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 26 H 0.05 0.77 7.44 -51.93 -0.39 0.38 16 27 H 0.09 1.36 7.83 -51.93 -0.41 0.96 16 28 H 0.05 0.85 4.65 -51.93 -0.24 0.61 16 29 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 30 H 0.02 0.39 6.75 -51.93 -0.35 0.04 16 31 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 32 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 302.60 15.07 4.56 4.56 Total: -1.00 -30.35 302.60 -9.11 -39.45 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -3.77 Total: -5.02 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.56 Total: 1.13 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.66 Total: -52.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.46 Total: -2.43 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.19 Total: -1.16 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.35 -9.11 -39.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142408645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.689 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds