Wall clock time and date at job start Fri Apr 10 2020 15:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76204 * 100.00025 * 2 1 4 4 N 1.32561 * 119.21598 * 0.02562 * 3 2 1 5 5 C 1.32293 * 120.76840 * 179.68397 * 4 3 2 6 6 C 1.38539 * 119.21995 * 0.56279 * 5 4 3 7 7 C 1.50703 * 120.72000 * 179.71879 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72227 * 7 6 5 9 9 C 1.46902 * 111.00255 * 293.95458 * 8 7 6 10 10 C 1.46901 * 111.00103 * 169.99758 * 8 7 6 11 11 C 1.50696 * 109.47399 * 190.00043 * 10 8 7 12 12 H 1.08005 * 119.99725 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00189 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99790 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47047 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47167 * 119.99895 * 15 13 11 18 18 H 1.48495 * 109.47058 * 239.99959 * 15 13 11 19 19 C 1.38801 * 118.55694 * 359.44689 * 6 5 4 20 20 Cl 1.73602 * 120.41133 * 180.29375 * 19 6 5 21 21 N 1.32382 * 119.17267 * 0.27758 * 19 6 5 22 22 H 1.09000 * 109.46898 * 59.99779 * 1 2 3 23 23 H 1.08998 * 109.46907 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47167 * 299.99833 * 1 2 3 25 25 H 1.08004 * 120.38697 * 180.30196 * 5 4 3 26 26 H 1.09002 * 109.47152 * 139.72314 * 7 6 5 27 27 H 1.09001 * 109.46980 * 19.72414 * 7 6 5 28 28 H 1.09005 * 109.46528 * 59.99744 * 9 8 7 29 29 H 1.09000 * 109.46785 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47044 * 300.00388 * 9 8 7 31 31 H 1.08998 * 109.47407 * 310.00536 * 10 8 7 32 32 H 1.09007 * 109.46608 * 69.99971 * 10 8 7 33 33 H 0.96994 * 119.99598 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0889 2.5734 0.0005 5 6 1.2833 3.8819 0.0068 6 6 2.5786 4.3733 0.0010 7 6 2.8389 5.8577 0.0015 8 7 3.1601 6.2990 -1.3623 9 6 4.4320 5.7213 -1.8167 10 6 3.1872 7.7652 -1.4486 11 6 3.2741 8.1818 -2.8942 12 1 3.3056 7.4323 -3.6712 13 6 3.3133 9.5198 -3.2249 14 7 3.2745 10.4324 -2.2787 15 14 3.4203 10.0362 -5.0169 16 1 3.4495 8.8277 -5.8794 17 1 2.2380 10.8648 -5.3647 18 1 4.6590 10.8267 -5.2311 19 6 3.6314 3.4688 0.0005 20 17 5.2736 4.0317 0.0010 21 7 3.3675 2.1715 0.0000 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.4420 4.5592 0.0121 26 1 3.6772 6.0794 0.6620 27 1 1.9505 6.3822 0.3534 28 1 4.3603 4.6336 -1.8090 29 1 4.6455 6.0639 -2.8292 30 1 5.2337 6.0373 -1.1492 31 1 2.2774 8.1720 -1.0073 32 1 4.0544 8.1449 -0.9082 33 1 3.3025 11.3736 -2.5114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142408645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:33 Heat of formation + Delta-G solvation = 38.329567 kcal Electronic energy + Delta-G solvation = -18052.294603 eV Core-core repulsion = 15072.203372 eV Total energy + Delta-G solvation = -2980.091231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.21876 -38.74182 -37.88631 -35.01174 -34.85628 -33.48979 -29.93628 -29.31147 -28.58118 -26.42417 -25.67334 -24.08318 -22.06369 -19.89439 -19.27995 -18.55982 -17.22936 -16.89016 -16.69291 -16.01602 -15.81805 -15.68185 -15.41927 -14.93169 -14.45338 -14.35050 -14.01244 -13.84334 -13.54855 -13.47205 -12.87004 -12.82993 -12.73779 -12.48911 -12.23792 -11.94073 -11.89365 -11.63504 -11.49751 -11.28414 -10.81138 -10.64895 -10.59573 -9.09351 -8.83681 -8.19623 -6.28399 -0.60171 -0.29569 -0.02337 0.48943 1.17607 1.41191 1.42657 1.55221 2.25225 2.41903 3.01020 3.13577 3.25501 3.36642 3.54023 3.63891 4.10599 4.36723 4.39239 4.42254 4.54151 4.63551 4.74706 4.91254 5.00448 5.04089 5.19833 5.28699 5.47023 5.65016 6.03460 6.23565 6.47325 6.55308 6.86597 7.40837 8.91197 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.003962 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.845418 B = 7065.328581 C = 7522.560458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S 0.006 5.994 3 C 0.288 3.712 4 N -0.519 5.519 5 C 0.197 3.803 6 C -0.164 4.164 7 C 0.099 3.901 8 N -0.538 5.538 9 C 0.035 3.965 10 C 0.208 3.792 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.280 1.280 19 C 0.225 3.775 20 Cl -0.001 7.001 21 N -0.519 5.519 22 H 0.090 0.910 23 H 0.137 0.863 24 H 0.094 0.906 25 H 0.212 0.788 26 H 0.047 0.953 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.018 0.982 32 H -0.032 1.032 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 -18.656 6.871 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.239 5.761 3 C -0.086 4.086 4 N -0.237 5.237 5 C 0.028 3.972 6 C -0.174 4.174 7 C -0.030 4.030 8 N -0.263 5.263 9 C -0.113 4.113 10 C 0.082 3.918 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.572 5.572 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.206 1.206 19 C 0.050 3.950 20 Cl 0.028 6.972 21 N -0.239 5.239 22 H 0.109 0.891 23 H 0.155 0.845 24 H 0.113 0.887 25 H 0.229 0.771 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.036 0.964 32 H -0.014 1.014 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.537 -20.605 6.583 22.102 hybrid contribution 0.591 3.063 -0.273 3.132 sum -3.946 -17.542 6.310 19.055 Atomic orbital electron populations 1.23708 0.91100 1.08304 1.07418 1.85850 1.10007 0.90553 1.89732 1.25478 0.85578 1.02485 0.95057 1.68859 1.33457 1.04446 1.16918 1.23696 0.96030 0.91171 0.86273 1.21357 0.94124 0.97860 1.04034 1.20936 1.02461 0.88677 0.90958 1.62138 1.32554 1.10818 1.20742 1.22810 0.89726 0.98557 1.00190 1.19430 0.94417 0.81799 0.96144 1.21460 1.49714 0.91806 0.93070 0.92304 1.25798 0.94951 0.96604 1.01861 1.70063 1.51777 1.01123 1.34188 0.85420 0.77731 0.78245 0.79742 1.19132 1.20266 1.20587 1.22128 0.88690 0.89767 0.94420 1.98435 1.17162 1.86283 1.95328 1.67885 1.23041 1.15325 1.17650 0.89127 0.84515 0.88718 0.77137 0.93535 0.87848 0.91881 0.93050 0.95908 0.96396 1.01399 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.62 113.37 1.09 -0.64 16 2 S 0.01 0.11 22.89 -56.49 -1.29 -1.18 16 3 C 0.29 7.87 7.85 180.43 1.42 9.28 16 4 N -0.52 -13.23 9.14 -196.48 -1.80 -15.02 16 5 C 0.20 4.96 10.96 84.70 0.93 5.88 16 6 C -0.16 -4.84 5.18 -19.66 -0.10 -4.94 16 7 C 0.10 3.23 4.98 85.56 0.43 3.66 16 8 N -0.54 -22.31 4.74 -931.63 -4.42 -26.73 16 9 C 0.04 1.40 7.50 127.69 0.96 2.36 16 10 C 0.21 10.55 4.72 85.56 0.40 10.96 16 11 C -0.52 -28.91 8.46 25.60 0.22 -28.70 16 12 H 0.06 3.26 7.12 -2.91 -0.02 3.24 16 13 C 0.01 0.34 5.46 84.66 0.46 0.81 16 14 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 15 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 C 0.23 6.98 6.24 84.74 0.53 7.51 16 20 Cl 0.00 -0.02 22.98 -2.72 -0.06 -0.09 16 21 N -0.52 -16.08 10.40 -187.27 -1.95 -18.03 16 22 H 0.09 1.26 8.11 -2.40 -0.02 1.24 16 23 H 0.14 0.92 8.14 -2.40 -0.02 0.90 16 24 H 0.09 1.21 8.11 -2.39 -0.02 1.19 16 25 H 0.21 3.94 8.06 -2.91 -0.02 3.91 16 26 H 0.05 1.53 7.44 -2.39 -0.02 1.51 16 27 H 0.10 3.05 7.83 -2.39 -0.02 3.04 16 28 H 0.06 2.28 4.65 -2.38 -0.01 2.27 16 29 H 0.05 2.22 6.76 -2.39 -0.02 2.20 16 30 H 0.02 0.88 6.75 -2.39 -0.02 0.86 16 31 H 0.02 0.95 7.93 -2.39 -0.02 0.93 16 32 H -0.03 -1.75 8.12 -2.38 -0.02 -1.77 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -64.62 302.60 0.25 -64.37 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: 1.13 Total: -1.04 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.33 Total: 6.18 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -7.88 Total: -114.00 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.29 Total: -1.18 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.06 Total: -0.09 kcal Total: -64.62 0.25 -64.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142408645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.699 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds