Wall clock time and date at job start Fri Apr 10 2020 15:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09003 * 109.46787 * 305.83073 * 3 2 1 5 5 C 1.50698 * 109.47374 * 185.83202 * 3 2 1 6 6 H 1.08003 * 119.99716 * 334.08792 * 5 3 2 7 7 C 1.37875 * 120.00134 * 154.08138 * 5 3 2 8 8 N 1.31514 * 120.00153 * 6.24384 * 7 5 3 9 9 Si 1.86798 * 119.99926 * 186.24183 * 7 5 3 10 10 H 1.48500 * 109.46965 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47354 * 300.00345 * 9 7 5 12 12 H 1.48500 * 109.47141 * 60.00417 * 9 7 5 13 13 N 1.46499 * 109.47195 * 65.83113 * 3 2 1 14 14 C 1.38595 * 119.99718 * 275.00115 * 13 3 2 15 15 N 1.32897 * 120.48870 * 359.72686 * 14 13 3 16 16 C 1.32517 * 120.61853 * 179.71817 * 15 14 13 17 17 S 1.76195 * 119.16929 * 180.26362 * 16 15 14 18 18 C 1.81000 * 99.99749 * 180.29538 * 17 16 15 19 19 N 1.32531 * 121.65111 * 0.56619 * 16 15 14 20 20 C 1.32496 * 120.93595 * 359.71493 * 19 16 15 21 21 C 1.38212 * 119.28539 * 0.02562 * 20 19 16 22 22 Cl 1.73596 * 120.75877 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 25 25 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 26 26 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 27 27 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 28 28 H 0.97002 * 119.99512 * 355.17455 * 8 7 5 29 29 H 0.97001 * 119.99869 * 94.99976 * 13 3 2 30 30 H 1.09004 * 109.47545 * 300.00096 * 18 17 16 31 31 H 1.09003 * 109.47275 * 59.99536 * 18 17 16 32 32 H 1.08998 * 109.47379 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.35685 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9856 -0.8332 5 6 3.5401 1.4450 -0.1444 6 1 4.1154 0.5912 0.1820 7 6 4.1780 2.5371 -0.6932 8 7 3.4942 3.6240 -0.9773 9 14 6.0137 2.4730 -1.0333 10 1 6.4537 3.7641 -1.6204 11 1 6.7443 2.2316 0.2368 12 1 6.3022 1.3722 -1.9873 13 7 1.6697 2.0915 1.2601 14 6 0.4196 2.6738 1.3984 15 7 -0.4485 2.6539 0.3924 16 6 -1.6465 3.2050 0.5236 17 16 -2.7701 3.1506 -0.8325 18 6 -4.1780 4.0286 -0.1094 19 7 -2.0183 3.8013 1.6473 20 6 -1.2012 3.8628 2.6885 21 6 0.0559 3.2958 2.5957 22 17 1.1570 3.3536 3.9365 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.5306 3.6335 -0.8665 29 1 2.2993 2.1135 1.9977 30 1 -4.5247 3.4937 0.7748 31 1 -3.8722 5.0362 0.1723 32 1 -4.9854 4.0844 -0.8396 33 1 -1.5137 4.3513 3.5995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:39 Heat of formation + Delta-G solvation = 29.850169 kcal Electronic energy + Delta-G solvation = -18719.149398 eV Core-core repulsion = 15738.690473 eV Total energy + Delta-G solvation = -2980.458925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40586 -36.79952 -36.27158 -33.42061 -32.13949 -31.98124 -29.96671 -28.66708 -26.57865 -24.22222 -23.39558 -22.71499 -20.22577 -18.55439 -17.53591 -16.70950 -16.12370 -15.46590 -15.15873 -14.46099 -14.25580 -13.87763 -13.66234 -13.48598 -13.18822 -12.93410 -12.55924 -12.40405 -11.97548 -11.22094 -11.13343 -11.04287 -10.98928 -10.86796 -10.72267 -10.40175 -10.31512 -10.21165 -9.82991 -9.49686 -8.83892 -8.78991 -8.63341 -7.65900 -7.22416 -6.64213 -4.45975 1.15617 1.45042 1.77620 2.30254 2.49371 3.30813 3.33257 3.52582 3.87153 4.10225 4.33574 4.59398 5.01210 5.14822 5.19586 5.26560 5.36144 5.68557 5.84935 5.95016 5.98494 6.15966 6.36086 6.61871 6.75923 6.86938 6.94567 7.10930 7.25849 7.66706 8.00894 8.14769 8.24845 8.56326 8.72247 9.34699 10.73433 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.006218 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.129233 B = 4502.002257 C = 5265.476836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 C 0.240 3.760 4 H 0.062 0.938 5 C -0.609 4.609 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.881 5.881 9 Si 1.070 2.930 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.657 5.657 14 C 0.461 3.539 15 N -0.535 5.535 16 C 0.336 3.664 17 S -0.004 6.004 18 C -0.142 4.142 19 N -0.579 5.579 20 C 0.197 3.803 21 C -0.236 4.236 22 Cl -0.063 7.063 23 H 0.029 0.971 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.277 0.723 29 H 0.401 0.599 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 -0.382 4.965 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.141 3.859 4 H 0.080 0.920 5 C -0.648 4.648 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.514 5.514 9 Si 0.897 3.103 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.283 5.283 14 C 0.208 3.792 15 N -0.264 5.264 16 C -0.042 4.042 17 S 0.229 5.771 18 C -0.312 4.312 19 N -0.304 5.304 20 C 0.032 3.968 21 C -0.277 4.277 22 Cl -0.035 7.035 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.239 0.761 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.639 -0.102 2.445 9.945 hybrid contribution -0.399 -0.274 3.139 3.176 sum -10.038 -0.376 5.583 11.492 Atomic orbital electron populations 1.21831 0.96987 0.98654 1.01966 1.21820 0.94272 0.98834 1.00644 1.19173 0.95196 0.88870 0.82639 0.91966 1.22123 0.91122 1.05953 1.45586 0.92380 1.26063 1.07225 0.91758 0.92673 1.70763 1.10170 1.27119 1.43362 0.83529 0.73664 0.76320 0.76801 1.20600 1.21211 1.20978 1.47411 1.08796 1.53029 1.19062 1.18764 0.88075 0.85988 0.86337 1.68410 1.02564 1.25722 1.29692 1.24513 0.93299 0.91183 0.95249 1.85776 1.07829 1.70503 1.13023 1.23493 0.98341 1.04392 1.04932 1.68768 1.36024 1.25063 1.00591 1.22580 0.87060 0.90729 0.96389 1.21921 0.96534 1.16795 0.92499 1.98314 1.62879 1.97754 1.44518 0.95155 0.94020 0.92236 0.91957 0.93766 0.91088 0.76054 0.89365 0.89287 0.88168 0.81855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.47 37.16 0.31 -2.33 16 2 C -0.12 -2.45 5.58 -26.73 -0.15 -2.60 16 3 C 0.24 5.71 1.82 -69.08 -0.13 5.58 16 4 H 0.06 1.66 6.34 -51.93 -0.33 1.33 16 5 C -0.61 -15.73 8.49 -34.44 -0.29 -16.02 16 6 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 7 C 0.03 0.87 5.45 -17.82 -0.10 0.78 16 8 N -0.88 -25.32 13.63 55.43 0.76 -24.56 16 9 Si 1.07 23.59 29.91 -169.99 -5.08 18.50 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.66 -14.43 5.12 -54.88 -0.28 -14.71 16 14 C 0.46 9.54 6.08 -154.76 -0.94 8.60 16 15 N -0.53 -11.07 6.59 -12.65 -0.08 -11.15 16 16 C 0.34 6.18 7.85 -90.90 -0.71 5.47 16 17 S 0.00 -0.06 22.89 -107.50 -2.46 -2.52 16 18 C -0.14 -1.54 9.62 101.05 0.97 -0.57 16 19 N -0.58 -9.81 9.13 -13.51 -0.12 -9.93 16 20 C 0.20 3.17 11.10 -17.27 -0.19 2.98 16 21 C -0.24 -4.25 6.38 -39.03 -0.25 -4.50 16 22 Cl -0.06 -1.01 27.76 -51.86 -1.44 -2.45 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.84 5.58 -51.93 -0.29 0.55 16 25 H 0.06 1.19 7.74 -51.93 -0.40 0.79 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.28 8.15 6.77 -40.82 -0.28 7.88 16 29 H 0.40 8.68 7.38 -40.82 -0.30 8.38 16 30 H 0.09 0.95 8.11 -51.91 -0.42 0.53 16 31 H 0.09 0.99 8.11 -51.91 -0.42 0.57 16 32 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -28.04 305.67 -9.34 -37.38 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.76 Total: 7.44 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.47 Total: -2.61 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.27 Total: -60.35 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.08 Total: 18.50 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.46 Total: -2.52 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.44 Total: -2.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.04 -9.34 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.235 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds