Wall clock time and date at job start Fri Apr 10 2020 15:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09003 * 109.46787 * 305.83073 * 3 2 1 5 5 C 1.50698 * 109.47374 * 185.83202 * 3 2 1 6 6 H 1.08003 * 119.99716 * 334.08792 * 5 3 2 7 7 C 1.37875 * 120.00134 * 154.08138 * 5 3 2 8 8 N 1.31514 * 120.00153 * 6.24384 * 7 5 3 9 9 Si 1.86798 * 119.99926 * 186.24183 * 7 5 3 10 10 H 1.48500 * 109.46965 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47354 * 300.00345 * 9 7 5 12 12 H 1.48500 * 109.47141 * 60.00417 * 9 7 5 13 13 N 1.46499 * 109.47195 * 65.83113 * 3 2 1 14 14 C 1.38595 * 119.99718 * 275.00115 * 13 3 2 15 15 N 1.32897 * 120.48870 * 359.72686 * 14 13 3 16 16 C 1.32517 * 120.61853 * 179.71817 * 15 14 13 17 17 S 1.76195 * 119.16929 * 180.26362 * 16 15 14 18 18 C 1.81000 * 99.99749 * 180.29538 * 17 16 15 19 19 N 1.32531 * 121.65111 * 0.56619 * 16 15 14 20 20 C 1.32496 * 120.93595 * 359.71493 * 19 16 15 21 21 C 1.38212 * 119.28539 * 0.02562 * 20 19 16 22 22 Cl 1.73596 * 120.75877 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 25 25 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 26 26 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 27 27 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 28 28 H 0.97002 * 119.99512 * 355.17455 * 8 7 5 29 29 H 0.97001 * 119.99869 * 94.99976 * 13 3 2 30 30 H 1.09004 * 109.47545 * 300.00096 * 18 17 16 31 31 H 1.09003 * 109.47275 * 59.99536 * 18 17 16 32 32 H 1.08998 * 109.47379 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.35685 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9856 -0.8332 5 6 3.5401 1.4450 -0.1444 6 1 4.1154 0.5912 0.1820 7 6 4.1780 2.5371 -0.6932 8 7 3.4942 3.6240 -0.9773 9 14 6.0137 2.4730 -1.0333 10 1 6.4537 3.7641 -1.6204 11 1 6.7443 2.2316 0.2368 12 1 6.3022 1.3722 -1.9873 13 7 1.6697 2.0915 1.2601 14 6 0.4196 2.6738 1.3984 15 7 -0.4485 2.6539 0.3924 16 6 -1.6465 3.2050 0.5236 17 16 -2.7701 3.1506 -0.8325 18 6 -4.1780 4.0286 -0.1094 19 7 -2.0183 3.8013 1.6473 20 6 -1.2012 3.8628 2.6885 21 6 0.0559 3.2958 2.5957 22 17 1.1570 3.3536 3.9365 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.5306 3.6335 -0.8665 29 1 2.2993 2.1135 1.9977 30 1 -4.5247 3.4937 0.7748 31 1 -3.8722 5.0362 0.1723 32 1 -4.9854 4.0844 -0.8396 33 1 -1.5137 4.3513 3.5995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:38 Heat of formation + Delta-G solvation = 14.454118 kcal Electronic energy + Delta-G solvation = -18719.817021 eV Core-core repulsion = 15738.690473 eV Total energy + Delta-G solvation = -2981.126548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85329 -38.47030 -37.63102 -35.13703 -33.85145 -33.53725 -31.41525 -29.67145 -28.37347 -25.68281 -25.13841 -24.29301 -21.95152 -20.06113 -19.20473 -18.36114 -17.50857 -16.92546 -16.65469 -15.98321 -15.67778 -15.65157 -15.13353 -14.82032 -14.68645 -14.30139 -14.12317 -13.48355 -13.29547 -12.92011 -12.83073 -12.57573 -12.45611 -12.38529 -12.22951 -12.06064 -11.94745 -11.52975 -11.45082 -10.98329 -10.74562 -10.68815 -10.16915 -9.06795 -8.74675 -8.64152 -6.54850 -0.24946 0.20851 0.32629 1.09458 1.29085 1.54272 1.58853 1.79826 2.27267 2.51822 2.65990 3.15780 3.35046 3.59099 3.88145 4.21720 4.28618 4.33067 4.40233 4.42294 4.54550 4.86932 4.97847 5.05165 5.08024 5.16001 5.26747 5.49093 5.62374 5.83423 6.10047 6.32718 6.45661 6.65209 7.13738 7.33938 8.63401 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.006218 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.129233 B = 4502.002257 C = 5265.476836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.250 3.750 4 H 0.026 0.974 5 C -0.617 4.617 6 H 0.059 0.941 7 C -0.013 4.013 8 N -0.914 5.914 9 Si 1.115 2.885 10 H -0.289 1.289 11 H -0.269 1.269 12 H -0.268 1.268 13 N -0.669 5.669 14 C 0.444 3.556 15 N -0.561 5.561 16 C 0.319 3.681 17 S -0.018 6.018 18 C -0.129 4.129 19 N -0.568 5.568 20 C 0.205 3.795 21 C -0.245 4.245 22 Cl -0.047 7.047 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.260 0.740 29 H 0.401 0.599 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 -0.491 5.963 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.149 3.851 4 H 0.044 0.956 5 C -0.655 4.655 6 H 0.077 0.923 7 C -0.216 4.216 8 N -0.549 5.549 9 Si 0.937 3.063 10 H -0.215 1.215 11 H -0.194 1.194 12 H -0.193 1.193 13 N -0.297 5.297 14 C 0.193 3.807 15 N -0.290 5.290 16 C -0.058 4.058 17 S 0.215 5.785 18 C -0.298 4.298 19 N -0.293 5.293 20 C 0.040 3.960 21 C -0.286 4.286 22 Cl -0.019 7.019 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.239 0.761 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.152 0.848 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.783 -0.220 3.453 11.324 hybrid contribution -0.259 -0.213 2.880 2.899 sum -11.042 -0.433 6.333 12.736 Atomic orbital electron populations 1.21647 0.95552 0.99772 1.00861 1.21742 0.95473 0.97123 1.00718 1.18854 0.93999 0.89866 0.82335 0.95616 1.22406 0.92388 1.05682 1.45066 0.92314 1.27366 1.10729 0.91373 0.92100 1.70893 1.09204 1.28469 1.46295 0.82953 0.69416 0.76308 0.77647 1.21471 1.19367 1.19257 1.46686 1.09869 1.54841 1.18280 1.18894 0.87671 0.86506 0.87625 1.68402 1.03567 1.26766 1.30309 1.25128 0.93189 0.90892 0.96607 1.85838 1.09001 1.70942 1.12718 1.23611 0.96880 1.03480 1.05806 1.68881 1.35788 1.24225 1.00373 1.23243 0.85999 0.89467 0.97317 1.22012 0.97615 1.16717 0.92265 1.98314 1.62551 1.97702 1.43346 0.92731 0.94945 0.93486 0.92127 0.93216 0.92944 0.76091 0.88876 0.89308 0.84840 0.77851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.47 71.98 0.61 -4.03 16 2 C -0.11 -4.71 5.58 30.59 0.17 -4.54 16 3 C 0.25 12.22 1.82 44.25 0.08 12.30 16 4 H 0.03 1.45 6.34 -2.39 -0.02 1.43 16 5 C -0.62 -32.40 8.49 25.60 0.22 -32.18 16 6 H 0.06 3.01 7.82 -2.91 -0.02 2.98 16 7 C -0.01 -0.69 5.45 84.65 0.46 -0.23 16 8 N -0.91 -54.18 13.63 21.45 0.29 -53.89 16 9 Si 1.12 47.66 29.91 68.60 2.05 49.71 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.67 -30.03 5.12 -327.55 -1.68 -31.71 16 14 C 0.44 18.56 6.08 133.20 0.81 19.36 16 15 N -0.56 -23.55 6.59 -193.93 -1.28 -24.82 16 16 C 0.32 11.55 7.85 180.44 1.42 12.97 16 17 S -0.02 -0.51 22.89 -56.49 -1.29 -1.80 16 18 C -0.13 -2.44 9.62 113.37 1.09 -1.35 16 19 N -0.57 -18.24 9.13 -196.65 -1.79 -20.04 16 20 C 0.20 6.17 11.10 84.59 0.94 7.11 16 21 C -0.24 -8.61 6.38 22.63 0.14 -8.47 16 22 Cl -0.05 -1.47 27.76 -2.72 -0.08 -1.54 16 23 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.03 1.29 5.58 -2.39 -0.01 1.28 16 25 H 0.05 1.90 7.74 -2.38 -0.02 1.88 16 26 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.26 16.02 6.77 -92.71 -0.63 15.40 16 29 H 0.40 17.69 7.38 -92.71 -0.68 17.00 16 30 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 31 H 0.09 1.74 8.11 -2.39 -0.02 1.72 16 32 H 0.13 1.68 8.14 -2.40 -0.02 1.66 16 33 H 0.20 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -62.02 305.67 2.76 -59.26 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.60 Total: 23.89 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.94 Total: 0.94 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -4.46 Total: -130.46 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.05 Total: 49.71 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -1.29 Total: -1.80 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.54 kcal Total: -62.02 2.76 -59.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.714 kcal (2) G-P(sol) polarization free energy of solvation -62.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds