Wall clock time and date at job start Fri Apr 10 2020 15:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47295 * 2 1 4 4 C 1.46894 * 110.99998 * 292.15187 * 3 2 1 5 5 C 1.50693 * 109.47165 * 288.72082 * 4 3 2 6 6 H 1.08001 * 120.00404 * 2.45163 * 5 4 3 7 7 C 1.37880 * 120.00189 * 182.45184 * 5 4 3 8 8 N 1.31515 * 119.99971 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00285 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47107 * 120.00473 * 9 7 5 12 12 H 1.48503 * 109.47594 * 240.00047 * 9 7 5 13 13 C 1.39053 * 110.99729 * 56.10605 * 3 2 1 14 14 N 1.32715 * 120.04210 * 257.08334 * 13 3 2 15 15 C 1.32824 * 119.83644 * 179.97438 * 14 13 3 16 16 S 1.76195 * 120.03276 * 179.97438 * 15 14 13 17 17 C 1.81400 * 102.99999 * 0.02562 * 16 15 14 18 18 C 1.39154 * 119.93342 * 0.02562 * 15 14 13 19 19 N 1.32071 * 120.09249 * 359.97438 * 18 15 14 20 20 C 1.32143 * 120.16379 * 0.02562 * 19 18 15 21 21 Cl 1.73590 * 119.96909 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47183 * 300.59273 * 1 2 3 23 23 H 1.08996 * 109.46951 * 60.59298 * 1 2 3 24 24 H 1.09002 * 109.46802 * 180.58925 * 1 2 3 25 25 H 1.09001 * 109.47051 * 240.00019 * 2 1 3 26 26 H 1.09005 * 109.47093 * 120.00251 * 2 1 3 27 27 H 1.09000 * 109.47181 * 48.72401 * 4 3 2 28 28 H 1.09010 * 109.47252 * 168.72106 * 4 3 2 29 29 H 0.96999 * 120.00604 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47441 * 180.02562 * 17 16 15 31 31 H 1.08999 * 109.46928 * 299.99832 * 17 16 15 32 32 H 1.08999 * 109.47412 * 59.99737 * 17 16 15 33 33 H 1.08004 * 119.95352 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7076 2.0536 -1.2701 5 6 2.5759 1.4860 -2.3632 6 1 3.2601 0.6793 -2.1453 7 6 2.4969 1.9965 -3.6416 8 7 1.6641 2.9792 -3.9069 9 14 3.5736 1.2935 -4.9964 10 1 4.4172 0.2038 -4.4429 11 1 2.7150 0.7522 -6.0804 12 1 4.4443 2.3650 -5.5431 13 6 1.5032 2.0960 1.0776 14 7 0.5084 2.9546 0.8916 15 6 0.0179 3.6313 1.9240 16 16 -1.3023 4.7730 1.6829 17 6 -1.6203 4.6587 -0.0994 18 6 0.5484 3.4385 3.1959 19 7 1.5384 2.5834 3.3778 20 6 2.0292 1.9082 2.3535 21 17 3.3300 0.7851 2.5985 22 1 -0.3633 0.5230 0.8846 23 1 -0.3633 0.5046 -0.8952 24 1 -0.3633 -1.0276 0.0106 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.6587 1.8913 -1.5181 28 1 1.8970 3.1228 -1.1740 29 1 1.6087 3.3387 -4.8061 30 1 -2.4323 5.3345 -0.3677 31 1 -0.7202 4.9372 -0.6476 32 1 -1.8989 3.6362 -0.3540 33 1 0.1495 3.9883 4.0356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:16 Heat of formation + Delta-G solvation = 50.983254 kcal Electronic energy + Delta-G solvation = -18809.500777 eV Core-core repulsion = 15829.958251 eV Total energy + Delta-G solvation = -2979.542526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96908 -37.46140 -36.42117 -33.80830 -32.76208 -30.90804 -29.37876 -28.75189 -26.91572 -24.74116 -23.78543 -22.95374 -20.55786 -17.84283 -17.50294 -16.96778 -16.25219 -15.73701 -15.43619 -14.55126 -14.30789 -13.97031 -13.71030 -13.34076 -13.21855 -12.73609 -12.58261 -12.21591 -11.99452 -11.58761 -11.44701 -11.31050 -11.03478 -10.95460 -10.82035 -10.71614 -10.61821 -10.35342 -10.14871 -9.65031 -9.32182 -9.01084 -8.54208 -7.89853 -7.40663 -6.13129 -4.15458 0.73463 1.21222 1.38160 2.08709 2.26610 3.24984 3.33068 3.37214 3.61164 4.00959 4.37962 4.49446 4.61243 4.97547 5.22314 5.29561 5.30216 5.42008 5.50895 5.63889 5.81684 5.93913 6.06156 6.17038 6.39415 6.59048 6.86015 7.20083 7.29224 7.53755 7.71234 7.84631 7.97395 8.30536 8.90636 9.48439 10.97244 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.006828 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.692325 B = 4099.682554 C = 5455.501899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 N -0.466 5.466 4 C 0.200 3.800 5 C -0.515 4.515 6 H 0.066 0.934 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.325 3.675 14 N -0.458 5.458 15 C 0.092 3.908 16 S -0.067 6.067 17 C -0.128 4.128 18 C 0.046 3.954 19 N -0.407 5.407 20 C 0.102 3.898 21 Cl -0.009 7.009 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.017 0.983 28 H 0.035 0.965 29 H 0.262 0.738 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -0.222 11.079 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.063 4.063 3 N -0.184 5.184 4 C 0.077 3.923 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.086 3.914 14 N -0.182 5.182 15 C -0.162 4.162 16 S 0.170 5.830 17 C -0.297 4.297 18 C -0.121 4.121 19 N -0.123 5.123 20 C -0.073 4.073 21 Cl 0.019 6.981 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.553 0.463 11.640 12.905 hybrid contribution 0.614 -0.974 -1.817 2.151 sum -4.939 -0.511 9.823 11.007 Atomic orbital electron populations 1.22396 0.97757 1.01645 1.02186 1.22158 0.92903 0.87535 1.03668 1.59912 1.51574 1.02891 1.04016 1.19816 0.96432 0.94409 0.81668 1.21159 1.22414 1.19137 0.92697 0.91603 1.24939 0.95657 0.95001 0.98641 1.69965 1.36622 1.25661 1.20931 0.86431 0.80303 0.79053 0.81599 1.19552 1.21032 1.20969 1.20792 0.87136 0.92044 0.91394 1.69294 1.09140 1.08852 1.30868 1.24189 0.99959 0.98943 0.93083 1.85205 1.36636 1.48339 1.12819 1.23519 1.06387 1.06762 0.93062 1.22978 0.94834 0.98244 0.96059 1.67652 1.08454 1.04050 1.32185 1.22180 0.96285 0.98730 0.90059 1.98378 1.45171 1.57481 1.97076 0.94215 0.90999 0.92287 0.88026 0.91368 0.96544 0.94675 0.92881 0.87880 0.88520 0.89196 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.31 37.16 0.35 -2.75 16 2 C 0.06 1.15 5.71 -3.83 -0.02 1.13 16 3 N -0.47 -9.85 4.17 -174.42 -0.73 -10.58 16 4 C 0.20 4.99 3.83 -4.98 -0.02 4.97 16 5 C -0.52 -13.81 8.51 -34.44 -0.29 -14.11 16 6 H 0.07 1.74 7.43 -52.49 -0.39 1.35 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.33 6.41 4.40 -154.65 -0.68 5.73 16 14 N -0.46 -8.75 7.87 -11.07 -0.09 -8.84 16 15 C 0.09 1.48 7.00 -16.78 -0.12 1.36 16 16 S -0.07 -0.88 22.56 -107.50 -2.43 -3.31 16 17 C -0.13 -1.72 10.04 101.05 1.01 -0.71 16 18 C 0.05 0.69 10.97 -17.11 -0.19 0.50 16 19 N -0.41 -6.85 10.47 -9.83 -0.10 -6.95 16 20 C 0.10 1.84 7.20 -17.03 -0.12 1.72 16 21 Cl -0.01 -0.15 27.06 -51.86 -1.40 -1.55 16 22 H 0.04 0.68 6.89 -51.93 -0.36 0.33 16 23 H 0.07 1.38 6.43 -51.93 -0.33 1.04 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 1.93 7.03 -51.93 -0.37 1.57 16 26 H 0.07 1.12 6.64 -51.93 -0.34 0.78 16 27 H 0.02 0.44 6.15 -51.93 -0.32 0.12 16 28 H 0.04 0.98 7.76 -51.92 -0.40 0.58 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.10 1.08 8.14 -51.92 -0.42 0.65 16 31 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 32 H 0.09 1.30 8.14 -51.92 -0.42 0.87 16 33 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -28.75 305.97 -8.36 -37.11 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.76 Total: -1.13 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.18 Total: -0.62 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.18 Total: -51.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.43 Total: -3.31 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.40 Total: -1.55 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.75 -8.36 -37.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.097 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds