Wall clock time and date at job start Fri Apr 10 2020 15:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.47179 * 2 1 4 4 C 1.46896 * 111.00273 * 75.85196 * 3 2 1 5 5 C 1.50697 * 109.47281 * 199.28518 * 4 3 2 6 6 H 1.07996 * 119.99842 * 355.15237 * 5 4 3 7 7 C 1.37882 * 120.00002 * 175.15917 * 5 4 3 8 8 N 1.31513 * 119.99846 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00001 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46886 * 90.00657 * 9 7 5 11 11 H 1.48498 * 109.47063 * 209.99935 * 9 7 5 12 12 H 1.48493 * 109.47324 * 330.00436 * 9 7 5 13 13 C 1.40113 * 110.99852 * 199.80500 * 3 2 1 14 14 C 1.38612 * 120.88307 * 295.76742 * 13 3 2 15 15 N 1.32620 * 119.13411 * 179.71708 * 14 13 3 16 16 C 1.31837 * 121.05805 * 0.57248 * 15 14 13 17 17 Cl 1.73602 * 119.02558 * 179.68314 * 16 15 14 18 18 N 1.31942 * 121.94721 * 359.70164 * 16 15 14 19 19 C 1.32903 * 120.74262 * 359.97438 * 18 16 15 20 20 S 1.76194 * 120.56346 * 180.02562 * 19 18 16 21 21 C 1.81002 * 99.99971 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.46796 * 54.85802 * 1 2 3 23 23 H 1.08994 * 109.47227 * 174.85280 * 1 2 3 24 24 H 1.08999 * 109.47538 * 294.85923 * 1 2 3 25 25 H 1.08996 * 109.47579 * 239.99678 * 2 1 3 26 26 H 1.09005 * 109.46538 * 119.99413 * 2 1 3 27 27 H 1.09004 * 109.47510 * 79.27741 * 4 3 2 28 28 H 1.09008 * 109.47155 * 319.28274 * 4 3 2 29 29 H 0.96994 * 119.99734 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.43230 * 359.97438 * 14 13 3 31 31 H 1.08994 * 109.47056 * 179.97438 * 21 20 19 32 32 H 1.08998 * 109.46810 * 300.00444 * 21 20 19 33 33 H 1.08998 * 109.47043 * 60.00010 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8792 1.9932 1.3298 5 6 1.9302 3.4940 1.2038 6 1 2.1327 3.9488 0.2454 7 6 1.7185 4.2865 2.3121 8 7 1.7626 5.5962 2.2020 9 14 1.3677 3.4997 3.9696 10 1 2.6466 3.2676 4.6879 11 1 0.5054 4.4027 4.7735 12 1 0.6725 2.2036 3.7652 13 6 3.3474 1.4482 -0.4432 14 6 4.3672 0.8459 0.2769 15 7 5.6108 0.9224 -0.1775 16 6 5.8891 1.5692 -1.2921 17 17 7.5366 1.6431 -1.8341 18 7 4.9525 2.1622 -2.0076 19 6 3.6804 2.1269 -1.6245 20 16 2.4334 2.9199 -2.5839 21 6 3.4475 3.5908 -3.9246 22 1 -0.3633 0.5915 -0.8403 23 1 -0.3633 -1.0235 -0.0922 24 1 -0.3634 0.4320 0.9324 25 1 1.8934 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.6922 1.6545 1.9720 28 1 0.9247 1.6974 1.7656 29 1 1.6140 6.1537 2.9817 30 1 4.1514 0.3177 1.1939 31 1 2.8110 4.1276 -4.6280 32 1 4.1900 4.2737 -3.5117 33 1 3.9522 2.7748 -4.4417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:19 Heat of formation + Delta-G solvation = 53.854906 kcal Electronic energy + Delta-G solvation = -18658.088020 eV Core-core repulsion = 15678.670018 eV Total energy + Delta-G solvation = -2979.418002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81071 -37.55592 -36.57666 -33.66743 -32.66546 -31.48730 -29.48401 -28.70557 -27.05871 -24.83111 -23.47905 -22.52783 -20.41647 -18.45597 -17.77237 -16.93367 -15.99658 -15.58821 -15.36759 -14.65457 -14.05885 -13.90570 -13.77001 -13.65878 -13.31210 -12.51809 -12.35065 -12.22463 -12.19720 -11.68120 -11.56890 -11.38965 -11.37213 -10.99228 -10.93162 -10.80452 -10.33935 -10.22397 -9.94457 -9.49667 -9.36511 -9.11233 -8.64885 -7.79319 -7.29398 -6.10784 -4.09329 0.96307 1.09682 1.48905 1.80946 2.55425 3.21848 3.28035 3.30535 3.73584 4.15368 4.34351 4.37358 4.85558 5.08947 5.19459 5.30567 5.34188 5.41673 5.45703 5.68881 5.75549 5.95338 6.01790 6.16606 6.26719 6.54285 6.57296 6.60783 6.83246 7.37365 7.61467 7.78291 7.97215 8.52018 9.01825 9.48528 11.01837 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.006435 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.916978 B = 4350.494947 C = 4615.387159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.483 5.483 4 C 0.162 3.838 5 C -0.513 4.513 6 H 0.089 0.911 7 C 0.073 3.927 8 N -0.893 5.893 9 Si 0.868 3.132 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.054 3.946 14 C 0.138 3.862 15 N -0.510 5.510 16 C 0.361 3.639 17 Cl 0.010 6.990 18 N -0.514 5.514 19 C 0.184 3.816 20 S 0.043 5.957 21 C -0.167 4.167 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.034 0.966 27 H -0.010 1.010 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.172 0.828 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -9.926 -8.598 13.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.206 5.206 4 C 0.038 3.962 5 C -0.551 4.551 6 H 0.107 0.893 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.695 3.305 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.190 1.190 13 C -0.052 4.052 14 C -0.028 4.028 15 N -0.230 5.230 16 C 0.064 3.936 17 Cl 0.037 6.963 18 N -0.236 5.236 19 C -0.074 4.074 20 S 0.281 5.719 21 C -0.336 4.336 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.008 0.992 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.189 0.811 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.394 -9.283 -9.095 13.214 hybrid contribution 1.154 -0.736 1.771 2.238 sum 3.547 -10.019 -7.324 12.908 Atomic orbital electron populations 1.21729 0.94245 1.00724 1.03324 1.22128 0.96928 0.88182 1.00012 1.59736 1.13118 1.16735 1.30990 1.20488 0.96359 0.96866 0.82470 1.21052 1.48484 0.87788 0.97822 0.89326 1.24856 0.94942 0.94699 0.98433 1.69879 1.49637 1.03403 1.30211 0.86982 0.78775 0.79784 0.84949 1.20319 1.20951 1.19049 1.19999 0.92549 0.98023 0.94652 1.23553 0.86552 0.94596 0.98140 1.67719 1.22681 1.19344 1.13235 1.22639 0.88644 0.93298 0.89003 1.98395 1.12468 1.96811 1.88592 1.68144 0.99427 1.22081 1.33993 1.23762 0.93514 0.94836 0.95310 1.86430 1.05469 1.60544 1.19433 1.23631 1.04190 1.05014 1.00774 0.91416 0.92860 0.92226 0.91780 0.94749 0.99227 0.93870 0.92576 0.81146 0.88196 0.89337 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.96 37.16 0.37 -1.61 16 2 C 0.05 0.82 5.30 -3.82 -0.02 0.80 16 3 N -0.48 -9.21 3.78 -172.00 -0.65 -9.86 16 4 C 0.16 3.60 3.58 -4.98 -0.02 3.59 16 5 C -0.51 -13.86 9.51 -34.44 -0.33 -14.19 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 9 Si 0.87 20.58 27.57 -169.99 -4.69 15.89 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -5.90 6.40 56.52 0.36 -5.54 16 13 C 0.05 1.02 4.23 -83.18 -0.35 0.67 16 14 C 0.14 2.48 9.88 -17.07 -0.17 2.31 16 15 N -0.51 -9.32 10.39 -11.58 -0.12 -9.44 16 16 C 0.36 6.46 8.18 -91.99 -0.75 5.71 16 17 Cl 0.01 0.14 29.26 -51.86 -1.52 -1.37 16 18 N -0.51 -9.38 9.27 -10.32 -0.10 -9.47 16 19 C 0.18 3.45 7.02 -16.33 -0.11 3.34 16 20 S 0.04 0.72 22.24 -107.50 -2.39 -1.67 16 21 C -0.17 -2.20 9.68 101.05 0.98 -1.22 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.90 6.90 -51.93 -0.36 0.54 16 25 H 0.06 0.89 7.92 -51.93 -0.41 0.48 16 26 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 27 H -0.01 -0.22 6.45 -51.93 -0.33 -0.55 16 28 H 0.04 0.95 5.29 -51.92 -0.27 0.68 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.17 2.68 7.51 -52.49 -0.39 2.29 16 31 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -29.86 309.01 -8.43 -38.29 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -3.90 Total: -2.44 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.50 Total: 1.34 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.09 Total: -54.69 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.69 Total: 15.89 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.39 Total: -1.67 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.52 Total: -1.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.86 -8.43 -38.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.149 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds