Wall clock time and date at job start Fri Apr 10 2020 15:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47470 * 2 1 4 4 C 1.46901 * 111.00308 * 199.52145 * 3 2 1 5 5 C 1.50694 * 109.46911 * 66.04422 * 4 3 2 6 6 H 1.07999 * 120.00463 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99946 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00169 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47136 * 120.00100 * 9 7 5 12 12 H 1.48502 * 109.47372 * 240.00031 * 9 7 5 13 13 C 1.38804 * 110.99944 * 75.56400 * 3 2 1 14 14 N 1.32820 * 120.55613 * 58.98911 * 13 3 2 15 15 C 1.31968 * 120.75429 * 179.97438 * 14 13 3 16 16 Cl 1.73598 * 119.01878 * 179.97438 * 15 14 13 17 17 N 1.31832 * 121.95584 * 359.96523 * 15 14 13 18 18 C 1.32576 * 121.05619 * 359.75859 * 17 15 14 19 19 C 1.38722 * 119.11423 * 0.52558 * 18 17 15 20 20 S 1.76199 * 120.88051 * 179.74128 * 19 18 17 21 21 C 1.81395 * 103.00199 * 359.71513 * 20 19 18 22 22 H 1.09002 * 109.47347 * 184.87037 * 1 2 3 23 23 H 1.09008 * 109.47034 * 304.86606 * 1 2 3 24 24 H 1.09001 * 109.47028 * 64.86610 * 1 2 3 25 25 H 1.09001 * 109.47228 * 239.99416 * 2 1 3 26 26 H 1.09009 * 109.46968 * 120.00360 * 2 1 3 27 27 H 1.09001 * 109.47178 * 186.04864 * 4 3 2 28 28 H 1.09006 * 109.46675 * 306.04440 * 4 3 2 29 29 H 0.96997 * 119.99946 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.44352 * 180.25908 * 18 17 15 31 31 H 1.09012 * 109.46944 * 60.00258 * 21 20 19 32 32 H 1.08993 * 109.47210 * 300.00484 * 21 20 19 33 33 H 1.09004 * 109.47343 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4139 1.4504 -0.4583 5 6 3.4857 1.0447 -1.9078 6 1 2.5857 0.7665 -2.4360 7 6 4.7005 1.0287 -2.5598 8 7 5.7966 1.3670 -1.9165 9 14 4.7896 0.5251 -4.3564 10 1 3.4274 0.1931 -4.8457 11 1 5.3433 1.6460 -5.1578 12 1 5.6690 -0.6636 -4.4943 13 6 1.8810 1.9616 1.2549 14 7 2.4755 1.4245 2.3143 15 6 2.3466 1.9698 3.5091 16 17 3.1427 1.2298 4.8628 17 7 1.6315 3.0598 3.7052 18 6 1.0107 3.6606 2.6996 19 6 1.1114 3.1213 1.4254 20 16 0.2999 3.8778 0.0566 21 6 -0.5314 5.3025 0.8114 22 1 -0.3634 -1.0240 0.0873 23 1 -0.3633 0.5875 0.8433 24 1 -0.3633 0.4365 -0.9304 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.7854 2.4690 -0.3472 28 1 4.0248 0.7736 0.1392 29 1 6.6511 1.3561 -2.3753 30 1 0.4309 4.5555 2.8708 31 1 0.2112 5.9549 1.2709 32 1 -1.2298 4.9544 1.5723 33 1 -1.0745 5.8546 0.0443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:08 Heat of formation + Delta-G solvation = 54.232740 kcal Electronic energy + Delta-G solvation = -18511.999385 eV Core-core repulsion = 15532.597768 eV Total energy + Delta-G solvation = -2979.401617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92727 -37.38257 -36.59936 -33.29287 -32.67037 -31.64597 -30.01887 -29.04793 -26.76403 -24.49714 -23.66040 -22.58630 -20.80400 -18.00522 -17.27073 -17.18419 -16.37332 -15.57490 -14.83618 -14.74188 -14.58472 -13.98697 -13.82069 -13.72110 -13.19301 -12.95427 -12.52846 -12.26586 -11.86915 -11.49217 -11.40860 -11.29980 -11.13682 -10.93605 -10.73923 -10.46085 -10.39778 -10.14660 -10.09743 -9.88505 -9.44488 -9.16258 -8.55737 -7.86528 -7.27034 -6.10052 -4.12949 0.74101 1.07026 1.38653 1.70266 2.50870 3.28287 3.35798 3.39969 3.64060 3.95325 4.20295 4.41283 4.73342 4.95728 4.97446 5.04246 5.16398 5.26414 5.55460 5.66414 5.80292 5.89514 6.07306 6.30147 6.54898 6.67756 6.87468 7.05482 7.21687 7.64334 7.74667 7.96758 7.98956 8.31973 8.92762 9.50956 11.00786 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.006165 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.105967 B = 4540.676276 C = 5550.304438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 N -0.481 5.481 4 C 0.203 3.797 5 C -0.511 4.511 6 H 0.069 0.931 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.901 3.099 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.405 3.595 14 N -0.514 5.514 15 C 0.360 3.640 16 Cl 0.011 6.989 17 N -0.505 5.505 18 C 0.140 3.860 19 C -0.185 4.185 20 S 0.001 5.999 21 C -0.182 4.182 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.042 0.958 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.173 0.827 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 4.450 8.088 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 N -0.205 5.205 4 C 0.080 3.920 5 C -0.550 4.550 6 H 0.087 0.913 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.729 3.271 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.161 3.839 14 N -0.235 5.235 15 C 0.062 3.938 16 Cl 0.039 6.961 17 N -0.222 5.222 18 C -0.031 4.031 19 C -0.305 4.305 20 S 0.243 5.757 21 C -0.351 4.351 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.190 0.810 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.617 3.999 7.383 14.334 hybrid contribution 0.527 0.075 0.537 0.756 sum -11.090 4.074 7.920 14.224 Atomic orbital electron populations 1.21793 0.96004 1.00476 1.01864 1.22143 0.94458 0.87535 1.02949 1.60599 1.27133 1.19532 1.13277 1.19851 0.78325 0.97682 0.96122 1.21069 0.93676 1.45578 0.94641 0.91299 1.24976 0.95461 0.95313 0.98600 1.69979 0.98538 1.48017 1.36695 0.86388 0.78205 0.78121 0.84411 1.19490 1.20949 1.21038 1.20185 0.85935 0.88624 0.89172 1.68212 1.21969 1.34484 0.98831 1.22702 0.93500 0.89620 0.87997 1.98407 1.77010 1.80438 1.40286 1.67727 1.09784 1.09256 1.35434 1.23004 0.95687 0.98232 0.86208 1.23636 1.05252 1.01589 1.00018 1.86310 1.56071 1.25927 1.07380 1.23926 1.03946 1.01181 1.06051 0.92812 0.94246 0.91662 0.88179 0.93925 0.95218 0.96991 0.92777 0.80974 0.89898 0.90050 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.07 37.16 0.37 -1.89 16 2 C 0.06 1.08 5.49 -3.83 -0.02 1.06 16 3 N -0.48 -10.27 3.83 -174.15 -0.67 -10.94 16 4 C 0.20 5.24 4.55 -4.98 -0.02 5.22 16 5 C -0.51 -13.82 8.23 -34.44 -0.28 -14.11 16 6 H 0.07 1.82 7.31 -52.49 -0.38 1.44 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.40 8.03 4.59 -154.44 -0.71 7.32 16 14 N -0.51 -10.38 9.57 -10.69 -0.10 -10.48 16 15 C 0.36 6.50 8.17 -91.97 -0.75 5.74 16 16 Cl 0.01 0.17 29.26 -51.86 -1.52 -1.35 16 17 N -0.50 -8.33 10.39 -11.56 -0.12 -8.45 16 18 C 0.14 2.04 10.62 -17.05 -0.18 1.86 16 19 C -0.19 -3.08 6.16 -38.65 -0.24 -3.32 16 20 S 0.00 0.02 22.10 -107.50 -2.38 -2.36 16 21 C -0.18 -1.59 9.19 101.05 0.93 -0.66 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.62 7.60 -51.92 -0.39 0.23 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.10 2.05 6.58 -51.93 -0.34 1.71 16 26 H 0.04 0.84 7.44 -51.92 -0.39 0.46 16 27 H 0.03 0.84 8.06 -51.93 -0.42 0.42 16 28 H 0.01 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.17 1.80 6.05 -52.49 -0.32 1.48 16 31 H 0.08 0.66 7.78 -51.92 -0.40 0.26 16 32 H 0.08 0.59 7.81 -51.93 -0.41 0.19 16 33 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -30.14 311.31 -9.25 -39.40 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -3.88 Total: -3.90 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.00 Total: 2.75 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.15 Total: -55.31 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.38 Total: -2.36 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.52 Total: -1.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.14 -9.25 -39.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.631 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds