Wall clock time and date at job start Fri Apr 10 2020 15:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47470 * 2 1 4 4 C 1.46901 * 111.00308 * 199.52145 * 3 2 1 5 5 C 1.50694 * 109.46911 * 66.04422 * 4 3 2 6 6 H 1.07999 * 120.00463 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99946 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00169 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47136 * 120.00100 * 9 7 5 12 12 H 1.48502 * 109.47372 * 240.00031 * 9 7 5 13 13 C 1.38804 * 110.99944 * 75.56400 * 3 2 1 14 14 N 1.32820 * 120.55613 * 58.98911 * 13 3 2 15 15 C 1.31968 * 120.75429 * 179.97438 * 14 13 3 16 16 Cl 1.73598 * 119.01878 * 179.97438 * 15 14 13 17 17 N 1.31832 * 121.95584 * 359.96523 * 15 14 13 18 18 C 1.32576 * 121.05619 * 359.75859 * 17 15 14 19 19 C 1.38722 * 119.11423 * 0.52558 * 18 17 15 20 20 S 1.76199 * 120.88051 * 179.74128 * 19 18 17 21 21 C 1.81395 * 103.00199 * 359.71513 * 20 19 18 22 22 H 1.09002 * 109.47347 * 184.87037 * 1 2 3 23 23 H 1.09008 * 109.47034 * 304.86606 * 1 2 3 24 24 H 1.09001 * 109.47028 * 64.86610 * 1 2 3 25 25 H 1.09001 * 109.47228 * 239.99416 * 2 1 3 26 26 H 1.09009 * 109.46968 * 120.00360 * 2 1 3 27 27 H 1.09001 * 109.47178 * 186.04864 * 4 3 2 28 28 H 1.09006 * 109.46675 * 306.04440 * 4 3 2 29 29 H 0.96997 * 119.99946 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.44352 * 180.25908 * 18 17 15 31 31 H 1.09012 * 109.46944 * 60.00258 * 21 20 19 32 32 H 1.08993 * 109.47210 * 300.00484 * 21 20 19 33 33 H 1.09004 * 109.47343 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4139 1.4504 -0.4583 5 6 3.4857 1.0447 -1.9078 6 1 2.5857 0.7665 -2.4360 7 6 4.7005 1.0287 -2.5598 8 7 5.7966 1.3670 -1.9165 9 14 4.7896 0.5251 -4.3564 10 1 3.4274 0.1931 -4.8457 11 1 5.3433 1.6460 -5.1578 12 1 5.6690 -0.6636 -4.4943 13 6 1.8810 1.9616 1.2549 14 7 2.4755 1.4245 2.3143 15 6 2.3466 1.9698 3.5091 16 17 3.1427 1.2298 4.8628 17 7 1.6315 3.0598 3.7052 18 6 1.0107 3.6606 2.6996 19 6 1.1114 3.1213 1.4254 20 16 0.2999 3.8778 0.0566 21 6 -0.5314 5.3025 0.8114 22 1 -0.3634 -1.0240 0.0873 23 1 -0.3633 0.5875 0.8433 24 1 -0.3633 0.4365 -0.9304 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.7854 2.4690 -0.3472 28 1 4.0248 0.7736 0.1392 29 1 6.6511 1.3561 -2.3753 30 1 0.4309 4.5555 2.8708 31 1 0.2112 5.9549 1.2709 32 1 -1.2298 4.9544 1.5723 33 1 -1.0745 5.8546 0.0443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:07 Heat of formation + Delta-G solvation = 35.561147 kcal Electronic energy + Delta-G solvation = -18512.809046 eV Core-core repulsion = 15532.597768 eV Total energy + Delta-G solvation = -2980.211278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29984 -38.93409 -37.91576 -35.03317 -34.38341 -32.98402 -31.62261 -29.88765 -28.59703 -25.83133 -25.17728 -24.39468 -22.37972 -19.38899 -18.73252 -18.46796 -18.29873 -17.19195 -16.41525 -16.24222 -15.87180 -15.58660 -15.12142 -14.67596 -14.43177 -14.35261 -14.13804 -13.70362 -13.13038 -12.94546 -12.89039 -12.76421 -12.63378 -12.54191 -12.50284 -12.16572 -11.92631 -11.74604 -11.45811 -11.24763 -11.22156 -10.67493 -10.54003 -9.62290 -8.41874 -8.22733 -6.34251 -0.59767 -0.27453 0.16467 0.53825 1.43641 1.43969 1.54133 1.58069 2.26977 2.37544 2.57029 2.97495 3.11056 3.41594 3.67030 3.82050 4.22621 4.36112 4.38614 4.39622 4.60827 4.71193 4.90201 4.95145 4.96015 5.04860 5.15468 5.33587 5.55384 5.61308 5.91990 5.95423 6.40726 6.61317 6.79110 7.35091 8.89055 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.006165 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.105967 B = 4540.676276 C = 5550.304438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.055 3.945 3 N -0.475 5.475 4 C 0.228 3.772 5 C -0.520 4.520 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.974 3.026 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.368 3.632 14 N -0.544 5.544 15 C 0.343 3.657 16 Cl 0.025 6.975 17 N -0.500 5.500 18 C 0.153 3.847 19 C -0.179 4.179 20 S -0.045 6.045 21 C -0.166 4.166 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.029 0.971 27 H -0.006 1.006 28 H -0.028 1.028 29 H 0.265 0.735 30 H 0.222 0.778 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 5.703 7.843 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 N -0.199 5.199 4 C 0.103 3.897 5 C -0.558 4.558 6 H 0.092 0.908 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.798 3.202 10 H -0.181 1.181 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.125 3.875 14 N -0.265 5.265 15 C 0.045 3.955 16 Cl 0.052 6.948 17 N -0.217 5.217 18 C -0.019 4.019 19 C -0.299 4.299 20 S 0.198 5.802 21 C -0.335 4.335 22 H 0.097 0.903 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.012 0.988 28 H -0.010 1.010 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.987 5.251 7.142 16.560 hybrid contribution 1.176 -0.203 0.718 1.393 sum -12.811 5.049 7.860 15.855 Atomic orbital electron populations 1.21654 0.92743 1.02108 1.01963 1.22165 0.97023 0.86526 1.01398 1.60481 1.23866 1.20456 1.15095 1.19290 0.80699 0.94256 0.95431 1.21357 0.93995 1.45212 0.95208 0.90777 1.25944 0.94956 0.95091 1.03459 1.70123 0.99231 1.49284 1.38809 0.85255 0.78759 0.77721 0.78426 1.18050 1.20468 1.20620 1.20249 0.88349 0.90458 0.88489 1.68045 1.22947 1.35711 0.99809 1.22898 0.94375 0.90369 0.87900 1.98399 1.76822 1.80378 1.39163 1.67852 1.09379 1.08548 1.35914 1.23805 0.94584 0.98718 0.84814 1.23777 1.04306 1.00186 1.01602 1.86438 1.56285 1.28966 1.08483 1.24077 1.04110 0.98215 1.07053 0.90325 0.94228 0.91346 0.89904 0.95230 0.98784 1.01007 0.92625 0.76196 0.88424 0.87677 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 10.07 71.98 0.72 -3.19 16 2 C 0.06 2.21 5.49 86.30 0.47 2.69 16 3 N -0.48 -21.04 3.83 -704.89 -2.70 -23.74 16 4 C 0.23 12.45 4.55 85.55 0.39 12.84 16 5 C -0.52 -28.98 8.23 25.60 0.21 -28.77 16 6 H 0.07 3.97 7.31 -2.91 -0.02 3.95 16 7 C 0.00 0.22 5.46 84.66 0.46 0.68 16 8 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 9 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.37 14.93 4.59 133.27 0.61 15.54 16 14 N -0.54 -22.68 9.57 -187.73 -1.80 -24.48 16 15 C 0.34 12.39 8.17 180.82 1.48 13.87 16 16 Cl 0.02 0.77 29.26 -2.72 -0.08 0.69 16 17 N -0.50 -15.74 10.39 -190.49 -1.98 -17.72 16 18 C 0.15 4.06 10.62 84.70 0.90 4.96 16 19 C -0.18 -5.78 6.16 22.87 0.14 -5.64 16 20 S -0.04 -1.21 22.10 -56.49 -1.25 -2.46 16 21 C -0.17 -2.17 9.19 113.37 1.04 -1.13 16 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.21 7.60 -2.38 -0.02 1.19 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 3.53 6.58 -2.39 -0.02 3.51 16 26 H 0.03 1.23 7.44 -2.38 -0.02 1.21 16 27 H -0.01 -0.36 8.06 -2.39 -0.02 -0.38 16 28 H -0.03 -1.71 8.12 -2.38 -0.02 -1.73 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.22 3.53 6.05 -2.91 -0.02 3.51 16 31 H 0.10 1.07 7.78 -2.38 -0.02 1.05 16 32 H 0.10 0.96 7.81 -2.39 -0.02 0.94 16 33 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.03 311.31 2.07 -66.96 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: 1.13 Total: -0.48 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.43 Total: 11.86 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -6.19 Total: -122.26 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -1.25 Total: -2.46 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.69 kcal Total: -69.03 2.07 -66.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.521 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds