Wall clock time and date at job start Fri Apr 10 2020 15:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 S 1.81407 * 109.47202 * 240.00570 * 2 1 3 5 5 C 1.52996 * 109.47238 * 120.00562 * 2 1 3 6 6 N 1.46498 * 109.47059 * 64.99625 * 5 2 1 7 7 C 1.38539 * 119.99613 * 179.72369 * 6 5 2 8 8 C 1.40044 * 120.45189 * 0.27986 * 7 6 5 9 9 C 1.38800 * 118.58912 * 180.02562 * 8 7 6 10 10 Cl 1.73605 * 120.33266 * 179.97438 * 9 8 7 11 11 N 1.32205 * 119.32907 * 359.97438 * 9 8 7 12 12 C 1.33418 * 120.86114 * 0.02562 * 11 9 8 13 13 C 1.41575 * 119.23749 * 179.97438 * 12 11 9 14 14 H 1.07992 * 119.99821 * 180.02562 * 13 12 11 15 15 C 1.40053 * 119.99737 * 0.02562 * 13 12 11 16 16 N 1.30692 * 120.00331 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99841 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46781 * 89.99991 * 17 15 13 19 19 H 1.48497 * 109.47140 * 209.99844 * 17 15 13 20 20 H 1.48504 * 109.46711 * 330.00059 * 17 15 13 21 21 N 1.32571 * 120.44609 * 180.02562 * 7 6 5 22 22 H 1.08995 * 109.46988 * 299.99895 * 1 2 3 23 23 H 1.09001 * 109.46786 * 59.99727 * 1 2 3 24 24 H 1.09001 * 109.47309 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47478 * 300.00379 * 3 2 1 27 27 H 1.09000 * 109.46800 * 60.00835 * 3 2 1 28 28 H 1.34496 * 103.00305 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.47066 * 304.99893 * 5 2 1 30 30 H 1.08994 * 109.46974 * 185.00040 * 5 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 6 5 2 32 32 H 1.07996 * 120.70012 * 359.97438 * 8 7 6 33 33 H 0.96998 * 120.00014 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8550 -1.4813 5 6 2.0400 -0.7213 1.2491 6 7 1.6524 -2.1329 1.1904 7 6 2.0105 -2.9928 2.2159 8 6 2.7380 -2.5215 3.3158 9 6 3.0767 -3.4167 4.3210 10 17 3.9784 -2.8814 5.7046 11 7 2.7058 -4.6812 4.2140 12 6 2.0131 -5.1040 3.1551 13 6 1.6340 -6.4657 3.0755 14 1 1.0735 -6.8212 2.2237 15 6 1.9861 -7.3516 4.1015 16 7 2.6649 -6.9214 5.1322 17 14 1.4853 -9.1483 3.9969 18 1 2.5490 -9.9190 3.3042 19 1 1.2940 -9.6894 5.3665 20 1 0.2149 -9.2645 3.2367 21 7 1.6649 -4.2719 2.1716 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9563 0.8901 28 1 3.4711 -0.7787 -1.3503 29 1 1.6054 -0.2619 2.1369 30 1 3.1263 -0.6444 1.2950 31 1 1.1488 -2.4664 0.4314 32 1 3.0299 -1.4837 3.3801 33 1 2.9090 -7.5351 5.8425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170302546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:31 Heat of formation + Delta-G solvation = 18.661066 kcal Electronic energy + Delta-G solvation = -18074.232628 eV Core-core repulsion = 15093.288507 eV Total energy + Delta-G solvation = -2980.944121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.055 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92839 -38.55474 -37.38610 -35.93293 -34.81164 -32.96395 -31.13536 -28.47857 -28.22088 -26.96121 -24.01342 -23.25089 -21.76497 -19.78166 -18.57530 -18.11199 -17.79872 -16.66077 -16.33031 -15.95894 -15.77367 -15.42521 -15.26018 -14.68342 -14.57530 -14.27462 -13.86276 -13.21052 -13.11354 -13.04351 -12.79622 -12.74672 -12.69359 -12.26405 -12.21412 -12.02756 -11.92972 -11.63945 -11.08919 -10.92416 -10.87016 -10.11781 -9.41478 -9.10431 -8.76308 -8.42870 -6.78722 0.59532 0.64499 1.13268 1.15195 1.43288 1.54495 1.59724 1.69319 2.21131 2.40672 2.75923 3.44420 3.73408 3.88277 3.97636 4.25048 4.41953 4.49829 4.61384 4.64903 4.76137 4.77661 4.85236 4.91642 4.97177 5.11711 5.19498 5.29167 5.34256 6.01797 6.17841 6.50693 6.69293 6.76688 7.24041 8.21230 8.37700 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.004678 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.977214 B = 5984.624093 C = 7174.568668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.011 4.011 3 C -0.138 4.138 4 S -0.254 6.254 5 C 0.137 3.863 6 N -0.708 5.708 7 C 0.450 3.550 8 C -0.402 4.402 9 C 0.246 3.754 10 Cl -0.059 7.059 11 N -0.563 5.563 12 C 0.409 3.591 13 C -0.427 4.427 14 H 0.095 0.905 15 C 0.025 3.975 16 N -0.740 5.740 17 Si 1.000 3.000 18 H -0.261 1.261 19 H -0.264 1.264 20 H -0.254 1.254 21 N -0.664 5.664 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.406 0.594 32 H 0.137 0.863 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 12.950 -6.522 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 C -0.197 4.197 4 S -0.101 6.101 5 C 0.010 3.990 6 N -0.346 5.346 7 C 0.202 3.798 8 C -0.435 4.435 9 C 0.067 3.933 10 Cl -0.031 7.031 11 N -0.286 5.286 12 C 0.172 3.828 13 C -0.463 4.463 14 H 0.113 0.887 15 C -0.199 4.199 16 N -0.361 5.361 17 Si 0.819 3.181 18 H -0.186 1.186 19 H -0.188 1.188 20 H -0.178 1.178 21 N -0.396 5.396 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.244 0.756 32 H 0.155 0.845 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.032 11.687 -6.967 13.757 hybrid contribution 1.158 0.535 1.011 1.628 sum -0.874 12.222 -5.956 13.624 Atomic orbital electron populations 1.21716 0.89247 1.03155 1.04540 1.22891 1.00808 0.97976 0.90467 1.22147 1.01058 0.91342 1.05129 1.87507 1.08994 1.78971 1.34641 1.21652 0.99040 0.80205 0.98087 1.44293 1.61465 1.07087 1.21729 1.18466 0.86838 0.87906 0.86614 1.21168 1.21257 1.01273 0.99771 1.21894 0.91728 0.91819 0.87819 1.98282 1.73014 1.88376 1.43414 1.68579 1.20018 1.13315 1.26687 1.19878 0.86818 0.93942 0.82206 1.19701 1.30176 0.90304 1.06080 0.88712 1.27076 0.93366 1.06054 0.93425 1.70228 1.22405 1.37939 1.05532 0.84946 0.79849 0.74285 0.79025 1.18555 1.18804 1.17770 1.68270 1.35047 1.03201 1.33033 0.89017 0.89701 0.92785 0.92662 0.89367 0.89170 0.95126 0.89714 0.92930 0.75551 0.84503 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.35 71.98 0.60 -1.50 16 2 C -0.01 -0.20 0.88 -10.79 -0.01 -0.21 16 3 C -0.14 -1.77 8.48 71.98 0.61 -1.16 16 4 S -0.25 -5.83 23.48 -56.49 -1.33 -7.15 16 5 C 0.14 3.37 3.82 86.38 0.33 3.70 16 6 N -0.71 -24.15 5.10 -344.56 -1.76 -25.91 16 7 C 0.45 20.43 7.71 133.39 1.03 21.46 16 8 C -0.40 -17.93 9.23 22.84 0.21 -17.72 16 9 C 0.25 12.35 7.33 84.77 0.62 12.97 16 10 Cl -0.06 -2.48 29.15 -2.72 -0.08 -2.56 16 11 N -0.56 -32.27 7.86 -185.03 -1.45 -33.73 16 12 C 0.41 23.69 7.37 135.16 1.00 24.69 16 13 C -0.43 -23.82 9.37 23.53 0.22 -23.60 16 14 H 0.09 5.07 7.85 -2.91 -0.02 5.05 16 15 C 0.03 1.28 5.50 85.30 0.47 1.75 16 16 N -0.74 -39.73 11.42 21.84 0.25 -39.48 16 17 Si 1.00 37.83 29.56 68.60 2.03 39.86 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 20 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 21 N -0.66 -35.47 10.39 -191.53 -1.99 -37.46 16 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 1.10 7.18 -2.39 -0.02 1.08 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.09 2.03 9.07 73.35 0.67 2.70 16 29 H 0.08 1.93 7.97 -2.38 -0.02 1.92 16 30 H 0.05 1.35 7.97 -2.39 -0.02 1.33 16 31 H 0.41 13.73 7.01 -92.71 -0.65 13.08 16 32 H 0.14 5.14 6.85 -2.91 -0.02 5.12 16 33 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 Total: -1.00 -65.99 309.22 1.92 -64.07 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.17 Total: 21.98 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 5.08 Total: 20.37 kcal Atomic # 7 Polarization: -131.62 SS G_CDS: -4.95 Total: -136.57 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.33 Total: -7.15 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.08 Total: -2.56 kcal Total: -65.99 1.92 -64.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170302546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.736 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds