Wall clock time and date at job start Fri Apr 10 2020 15:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46839 * 111.00092 * 45.78796 * 13 12 11 15 15 C 1.53039 * 109.52305 * 185.83868 * 14 13 12 16 16 C 1.53125 * 109.27890 * 300.81995 * 15 14 13 17 17 N 1.46503 * 109.57343 * 177.58914 * 16 15 14 18 18 C 1.34768 * 119.99979 * 85.28716 * 17 16 15 19 19 N 1.34779 * 120.00231 * 179.97438 * 18 17 16 20 20 O 1.21587 * 120.00453 * 359.97438 * 18 17 16 21 21 C 1.53118 * 109.15877 * 57.65365 * 16 15 14 22 22 C 1.46852 * 110.99971 * 169.99744 * 13 12 11 23 23 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 25 25 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 28 28 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 29 29 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 30 30 H 1.09001 * 109.46400 * 305.85111 * 14 13 12 31 31 H 1.08995 * 109.46502 * 65.82322 * 14 13 12 32 32 H 1.08994 * 109.50793 * 180.87369 * 15 14 13 33 33 H 1.09003 * 109.50071 * 60.75960 * 15 14 13 34 34 H 1.08991 * 109.52310 * 297.74805 * 16 15 14 35 35 H 0.97001 * 119.99996 * 265.28350 * 17 16 15 36 36 H 0.97001 * 119.99744 * 359.97438 * 19 18 17 37 37 H 0.96994 * 120.00461 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.49987 * 182.40758 * 21 16 15 39 39 H 1.09000 * 109.54004 * 62.30692 * 21 16 15 40 40 H 1.09005 * 109.46090 * 294.18098 * 22 13 12 41 41 H 1.09009 * 109.46391 * 54.14781 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5958 -3.2363 -0.0026 12 6 5.8615 -4.7430 -0.0044 13 7 7.3105 -4.9847 -0.0039 14 6 7.9863 -4.1296 0.9802 15 6 9.5016 -4.3016 0.8521 16 6 9.8655 -5.7700 1.0887 17 7 11.3082 -5.9529 0.9110 18 6 12.1486 -5.7202 1.9386 19 7 13.4757 -5.8889 1.7753 20 8 11.7095 -5.3580 3.0130 21 6 9.1112 -6.6432 0.0822 22 6 7.6073 -6.4033 0.2326 23 1 -0.4850 0.8400 0.0004 24 1 3.6434 -3.4310 -0.8927 25 1 3.6440 -3.4322 0.8873 26 1 6.0388 -2.7886 -0.8923 27 1 6.0387 -2.7899 0.8876 28 1 5.4185 -5.1911 0.8851 29 1 5.4186 -5.1891 -0.8949 30 1 7.7224 -3.0878 0.7981 31 1 7.6722 -4.4135 1.9845 32 1 10.0025 -3.6785 1.5930 33 1 9.8183 -4.0047 -0.1478 34 1 9.5842 -6.0563 2.1020 35 1 11.6585 -6.2415 0.0538 36 1 13.8260 -6.1781 0.9183 37 1 14.0806 -5.7217 2.5149 38 1 9.3332 -7.6931 0.2732 39 1 9.4216 -6.3839 -0.9300 40 1 7.2949 -6.6766 1.2405 41 1 7.0681 -7.0131 -0.4925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079465872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:57 Heat of formation + Delta-G solvation = -47.074181 kcal Electronic energy + Delta-G solvation = -20237.318440 eV Core-core repulsion = 17084.480849 eV Total energy + Delta-G solvation = -3152.837591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42265 -38.98607 -35.81001 -34.12147 -33.15444 -32.42060 -31.07866 -30.50650 -26.06538 -25.51924 -23.76827 -23.22786 -21.28386 -20.83354 -20.05340 -18.48757 -17.71378 -17.43260 -16.18553 -15.61615 -15.27437 -15.16223 -14.97929 -14.95488 -14.57378 -14.09878 -13.92766 -13.74585 -13.33273 -12.81909 -12.57738 -12.30955 -11.97039 -11.56605 -11.46477 -11.37142 -11.20977 -11.04725 -10.97685 -10.68988 -10.52387 -10.36235 -10.10819 -10.04149 -9.75111 -9.26664 -8.98930 -8.54397 -8.36743 -6.92472 -6.26843 -3.98907 2.56799 2.91888 3.02130 3.31625 3.47150 3.56420 3.85476 4.11432 4.33280 4.44645 4.64240 4.80052 4.83453 5.01914 5.11777 5.12531 5.22375 5.29185 5.35504 5.40474 5.49636 5.57907 5.66992 5.74267 5.78288 5.83474 5.90222 6.03596 6.10027 6.22107 6.23938 6.40243 6.48630 6.56539 6.63687 7.01510 7.03702 7.62563 7.96960 8.31592 8.45850 9.19115 10.82637 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.033787 B = 0.002631 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.528190 B =10640.640043 C =11233.944608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.501 4.501 8 H 0.088 0.912 9 S -0.216 6.216 10 C -0.082 4.082 11 C -0.105 4.105 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.049 3.951 15 C -0.125 4.125 16 C 0.161 3.839 17 N -0.740 5.740 18 C 0.704 3.296 19 N -0.870 5.870 20 O -0.593 6.593 21 C -0.121 4.121 22 C 0.059 3.941 23 H 0.270 0.730 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.396 0.604 37 H 0.414 0.586 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.465 -15.239 -0.938 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.649 4.649 8 H 0.106 0.894 9 S 0.012 5.988 10 C -0.231 4.231 11 C -0.144 4.144 12 C -0.069 4.069 13 N -0.263 5.263 14 C -0.080 4.080 15 C -0.165 4.165 16 C 0.056 3.944 17 N -0.395 5.395 18 C 0.402 3.598 19 N -0.438 5.438 20 O -0.471 6.471 21 C -0.160 4.160 22 C -0.070 4.070 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.229 0.771 36 H 0.223 0.777 37 H 0.246 0.754 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 25.639 -13.835 -0.533 29.139 hybrid contribution -0.483 -0.651 0.210 0.837 sum 25.156 -14.485 -0.323 29.031 Atomic orbital electron populations 1.69939 1.05920 1.27687 1.48370 1.24808 0.94524 0.99035 0.93379 0.86659 0.81746 0.83184 0.79690 1.19377 1.20149 1.16165 1.22125 0.87100 0.97388 1.58277 0.89430 1.84151 1.11673 1.05482 1.97527 1.23012 0.97275 0.99128 1.03655 1.21507 0.95180 0.94419 1.03250 1.22165 0.86579 0.97124 1.00994 1.62034 1.09775 1.04742 1.49749 1.22210 0.93140 0.99119 0.93484 1.21999 0.95666 0.96072 1.02723 1.20939 0.77629 0.95562 1.00296 1.45204 1.07057 1.73651 1.13565 1.16018 0.81444 0.78122 0.84250 1.43015 1.06305 1.76419 1.18070 1.90990 1.76489 1.53703 1.25885 1.21850 0.95043 0.99217 0.99849 1.22002 0.95100 0.89747 1.00169 0.91999 0.91351 0.91565 0.90611 0.91217 0.94707 0.90443 0.89088 0.94593 0.90995 0.90943 0.89643 0.77106 0.77678 0.75442 0.91048 0.90434 0.94601 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.97 13.97 55.49 0.78 -26.20 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.77 27.74 -169.99 -4.71 17.05 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 7 C -0.50 -14.67 10.04 30.94 0.31 -14.36 16 8 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 9 S -0.22 -5.31 19.41 -107.50 -2.09 -7.40 16 10 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 11 C -0.10 -1.61 4.47 -26.73 -0.12 -1.73 16 12 C 0.06 0.76 5.27 -3.82 -0.02 0.74 16 13 N -0.54 -6.05 4.81 -234.67 -1.13 -7.18 16 14 C 0.05 0.56 4.85 -3.84 -0.02 0.54 16 15 C -0.13 -1.29 5.68 -26.65 -0.15 -1.44 16 16 C 0.16 1.44 2.52 -67.80 -0.17 1.27 16 17 N -0.74 -5.36 5.09 -58.56 -0.30 -5.66 16 18 C 0.70 6.68 8.81 -86.92 -0.77 5.91 16 19 N -0.87 -4.34 8.88 27.63 0.25 -4.09 16 20 O -0.59 -8.66 16.84 5.29 0.09 -8.57 16 21 C -0.12 -0.88 5.57 -26.65 -0.15 -1.03 16 22 C 0.06 0.53 5.42 -3.83 -0.02 0.51 16 23 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 25 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.07 6.21 -51.93 -0.32 0.75 16 28 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.13 5.81 -51.93 -0.30 0.82 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 35 H 0.40 1.65 8.62 -40.82 -0.35 1.30 16 36 H 0.40 0.67 8.84 -40.82 -0.36 0.31 16 37 H 0.41 1.80 8.93 -40.82 -0.36 1.43 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.66 8.12 -51.92 -0.42 0.24 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -34.81 341.43 -9.70 -44.52 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.74 Total: 0.75 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -0.99 Total: -8.37 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.41 Total: -43.13 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -2.09 Total: -7.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.81 -9.70 -44.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079465872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.558 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds