Wall clock time and date at job start Fri Apr 10 2020 15:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46839 * 111.00092 * 45.78796 * 13 12 11 15 15 C 1.53039 * 109.52305 * 185.83868 * 14 13 12 16 16 C 1.53125 * 109.27890 * 300.81995 * 15 14 13 17 17 N 1.46503 * 109.57343 * 177.58914 * 16 15 14 18 18 C 1.34768 * 119.99979 * 85.28716 * 17 16 15 19 19 N 1.34779 * 120.00231 * 179.97438 * 18 17 16 20 20 O 1.21587 * 120.00453 * 359.97438 * 18 17 16 21 21 C 1.53118 * 109.15877 * 57.65365 * 16 15 14 22 22 C 1.46852 * 110.99971 * 169.99744 * 13 12 11 23 23 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 25 25 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 28 28 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 29 29 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 30 30 H 1.09001 * 109.46400 * 305.85111 * 14 13 12 31 31 H 1.08995 * 109.46502 * 65.82322 * 14 13 12 32 32 H 1.08994 * 109.50793 * 180.87369 * 15 14 13 33 33 H 1.09003 * 109.50071 * 60.75960 * 15 14 13 34 34 H 1.08991 * 109.52310 * 297.74805 * 16 15 14 35 35 H 0.97001 * 119.99996 * 265.28350 * 17 16 15 36 36 H 0.97001 * 119.99744 * 359.97438 * 19 18 17 37 37 H 0.96994 * 120.00461 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.49987 * 182.40758 * 21 16 15 39 39 H 1.09000 * 109.54004 * 62.30692 * 21 16 15 40 40 H 1.09005 * 109.46090 * 294.18098 * 22 13 12 41 41 H 1.09009 * 109.46391 * 54.14781 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5958 -3.2363 -0.0026 12 6 5.8615 -4.7430 -0.0044 13 7 7.3105 -4.9847 -0.0039 14 6 7.9863 -4.1296 0.9802 15 6 9.5016 -4.3016 0.8521 16 6 9.8655 -5.7700 1.0887 17 7 11.3082 -5.9529 0.9110 18 6 12.1486 -5.7202 1.9386 19 7 13.4757 -5.8889 1.7753 20 8 11.7095 -5.3580 3.0130 21 6 9.1112 -6.6432 0.0822 22 6 7.6073 -6.4033 0.2326 23 1 -0.4850 0.8400 0.0004 24 1 3.6434 -3.4310 -0.8927 25 1 3.6440 -3.4322 0.8873 26 1 6.0388 -2.7886 -0.8923 27 1 6.0387 -2.7899 0.8876 28 1 5.4185 -5.1911 0.8851 29 1 5.4186 -5.1891 -0.8949 30 1 7.7224 -3.0878 0.7981 31 1 7.6722 -4.4135 1.9845 32 1 10.0025 -3.6785 1.5930 33 1 9.8183 -4.0047 -0.1478 34 1 9.5842 -6.0563 2.1020 35 1 11.6585 -6.2415 0.0538 36 1 13.8260 -6.1781 0.9183 37 1 14.0806 -5.7217 2.5149 38 1 9.3332 -7.6931 0.2732 39 1 9.4216 -6.3839 -0.9300 40 1 7.2949 -6.6766 1.2405 41 1 7.0681 -7.0131 -0.4925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079465872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:56 Heat of formation + Delta-G solvation = -75.168870 kcal Electronic energy + Delta-G solvation = -20238.536717 eV Core-core repulsion = 17084.480849 eV Total energy + Delta-G solvation = -3154.055868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16421 -39.83125 -36.71705 -34.90261 -34.68706 -34.09194 -31.87738 -31.40846 -28.01073 -26.92939 -24.72813 -24.09495 -22.06601 -21.82191 -20.93503 -19.61495 -19.11390 -18.31211 -17.19020 -17.03978 -16.58614 -16.13798 -16.07850 -15.93290 -15.66241 -15.27050 -14.97044 -14.89113 -14.58801 -14.28763 -13.74850 -13.50687 -13.38567 -13.07758 -13.01264 -12.53676 -12.33958 -12.22620 -12.10235 -11.95360 -11.65724 -11.55497 -11.39300 -11.34935 -11.16287 -10.69201 -10.55590 -9.93020 -9.28388 -8.99162 -8.52219 -6.23316 1.12498 1.31767 1.47722 1.74504 1.96397 2.19359 2.24641 2.68410 2.85696 2.91643 3.62596 3.77171 3.84445 3.99095 4.07272 4.13294 4.23766 4.32080 4.43166 4.47838 4.55830 4.62699 4.69190 4.75786 4.82012 4.95425 4.96724 5.09385 5.15061 5.17619 5.25593 5.32228 5.56784 5.69541 5.93458 6.04773 6.08131 6.09828 6.16386 6.91898 7.14749 7.69061 8.60833 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.033787 B = 0.002631 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.528190 B =10640.640043 C =11233.944608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.230 1.230 7 C -0.521 4.521 8 H 0.051 0.949 9 S -0.223 6.223 10 C -0.069 4.069 11 C -0.092 4.092 12 C 0.068 3.932 13 N -0.537 5.537 14 C 0.050 3.950 15 C -0.117 4.117 16 C 0.164 3.836 17 N -0.725 5.725 18 C 0.696 3.304 19 N -0.849 5.849 20 O -0.650 6.650 21 C -0.109 4.109 22 C 0.054 3.946 23 H 0.277 0.723 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.415 0.585 37 H 0.419 0.581 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.961 -15.937 -2.102 32.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.153 1.153 7 C -0.669 4.669 8 H 0.069 0.931 9 S 0.005 5.995 10 C -0.218 4.218 11 C -0.131 4.131 12 C -0.061 4.061 13 N -0.262 5.262 14 C -0.079 4.079 15 C -0.156 4.156 16 C 0.058 3.942 17 N -0.381 5.381 18 C 0.394 3.606 19 N -0.418 5.418 20 O -0.532 6.532 21 C -0.147 4.147 22 C -0.074 4.074 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.251 0.749 36 H 0.246 0.754 37 H 0.251 0.749 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 28.183 -14.571 -1.753 31.775 hybrid contribution -1.238 -0.570 0.566 1.476 sum 26.945 -15.141 -1.187 30.931 Atomic orbital electron populations 1.70038 1.07623 1.29096 1.49276 1.25798 0.95449 1.02801 0.92795 0.85699 0.80702 0.78601 0.80253 1.18493 1.18798 1.15348 1.22340 0.90073 0.96236 1.58235 0.93112 1.83859 1.07555 1.10475 1.97565 1.23076 1.00239 0.94919 1.03533 1.21396 0.91797 0.96672 1.03240 1.22030 0.87830 0.94785 1.01496 1.62065 1.08533 1.06117 1.49478 1.22157 0.94080 0.98604 0.93037 1.21892 0.94509 0.96832 1.02411 1.20781 0.78791 0.94970 0.99609 1.44966 1.06205 1.72981 1.13981 1.16293 0.82663 0.77879 0.83769 1.42802 1.04724 1.74985 1.19253 1.90956 1.77716 1.56303 1.28222 1.21779 0.93273 0.99885 0.99769 1.22144 0.96626 0.88305 1.00361 0.91409 0.91265 0.91899 0.90547 0.91315 0.94739 0.89473 0.90192 0.95714 0.92931 0.90162 0.92233 0.74905 0.75435 0.74867 0.89055 0.89085 0.95144 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.38 13.97 21.65 0.30 -57.08 16 2 C 0.04 2.15 5.50 84.86 0.47 2.62 16 3 Si 0.93 44.76 27.74 68.60 1.90 46.66 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.23 -10.75 6.74 99.48 0.67 -10.08 16 7 C -0.52 -31.14 10.04 67.96 0.68 -30.46 16 8 H 0.05 3.29 8.03 -2.91 -0.02 3.27 16 9 S -0.22 -10.85 19.41 -56.49 -1.10 -11.95 16 10 C -0.07 -2.63 5.67 71.98 0.41 -2.22 16 11 C -0.09 -2.71 4.47 30.59 0.14 -2.58 16 12 C 0.07 1.60 5.27 86.30 0.46 2.06 16 13 N -0.54 -11.06 4.81 -896.35 -4.31 -15.37 16 14 C 0.05 1.11 4.85 86.33 0.42 1.53 16 15 C -0.12 -2.30 5.68 30.65 0.17 -2.13 16 16 C 0.16 2.72 2.52 45.07 0.11 2.84 16 17 N -0.73 -9.08 5.09 -457.44 -2.33 -11.40 16 18 C 0.70 12.42 8.81 179.06 1.58 14.00 16 19 N -0.85 -6.80 8.88 -184.75 -1.64 -8.44 16 20 O -0.65 -19.17 16.84 -3.99 -0.07 -19.24 16 21 C -0.11 -1.26 5.57 30.64 0.17 -1.09 16 22 C 0.05 0.85 5.42 86.32 0.47 1.32 16 23 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 2.05 6.21 -2.39 -0.01 2.04 16 28 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.93 5.81 -2.39 -0.01 1.92 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.34 7.57 -2.39 -0.02 1.32 16 35 H 0.41 2.13 8.62 -92.71 -0.80 1.33 16 36 H 0.41 0.22 8.84 -92.71 -0.82 -0.60 16 37 H 0.42 2.96 8.93 -92.71 -0.83 2.14 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.09 1.26 8.12 -2.38 -0.02 1.24 16 Total: -1.00 -77.15 341.43 -3.60 -80.75 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -1.44 Total: 10.19 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 5.07 Total: -14.12 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -7.97 Total: -92.29 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.07 Total: -19.24 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.90 Total: 46.66 kcal Atomic # 16 Polarization: -10.85 SS G_CDS: -1.10 Total: -11.95 kcal Total: -77.15 -3.60 -80.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079465872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.583 kcal (2) G-P(sol) polarization free energy of solvation -77.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds