Wall clock time and date at job start Fri Apr 10 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47103 * 300.00540 * 3 2 1 6 6 H 1.48502 * 109.46704 * 60.00692 * 3 2 1 7 7 C 1.37878 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00396 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47475 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00022 * 179.97438 * 10 9 7 12 12 S 1.71194 * 120.00171 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99801 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00168 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47277 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47044 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.46953 * 180.02562 * 16 15 14 18 18 C 1.47015 * 110.99642 * 293.62955 * 17 16 15 19 19 C 1.53098 * 109.25723 * 177.60943 * 18 17 16 20 20 O 1.43023 * 109.25952 * 56.85124 * 19 18 17 21 21 C 1.43014 * 113.73189 * 301.32868 * 20 19 18 22 22 C 1.47016 * 110.99994 * 169.99953 * 17 16 15 23 23 H 0.96993 * 120.00173 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47391 * 59.99763 * 9 7 2 25 25 H 1.09000 * 109.46941 * 300.00226 * 9 7 2 26 26 H 0.96999 * 119.99846 * 0.02562 * 10 9 7 27 27 H 0.97003 * 120.00288 * 0.02562 * 13 11 10 28 28 H 1.08994 * 109.46874 * 59.99714 * 14 13 11 29 29 H 1.09000 * 109.47084 * 300.00188 * 14 13 11 30 30 H 1.08994 * 109.47742 * 59.99830 * 15 14 13 31 31 H 1.09009 * 109.47009 * 299.99684 * 15 14 13 32 32 H 1.08994 * 109.47199 * 59.99242 * 16 15 14 33 33 H 1.08996 * 109.46529 * 299.99637 * 16 15 14 34 34 H 1.08999 * 109.50673 * 297.54208 * 18 17 16 35 35 H 1.09004 * 109.50788 * 57.67624 * 18 17 16 36 36 H 1.08997 * 109.51060 * 296.91507 * 19 18 17 37 37 H 1.08998 * 109.54334 * 176.80599 * 19 18 17 38 38 H 1.08999 * 109.51224 * 298.73604 * 21 20 19 39 39 H 1.09005 * 109.53853 * 178.62625 * 21 20 19 40 40 H 1.09000 * 109.50136 * 302.32362 * 22 17 16 41 41 H 1.08996 * 109.50988 * 62.41201 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 16 0.0707 -5.1963 0.0000 13 7 2.6296 -5.9078 -0.0005 14 6 2.1413 -7.2890 -0.0005 15 6 3.3313 -8.2507 -0.0005 16 6 2.8213 -9.6932 -0.0012 17 7 3.9638 -10.6165 -0.0006 18 6 4.7202 -10.5194 -1.2575 19 6 5.9326 -11.4519 -1.1905 20 8 5.4880 -12.7857 -0.9278 21 6 4.7483 -12.9166 0.2892 22 6 3.5239 -11.9990 0.2372 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0002 27 1 3.5833 -5.7306 -0.0009 28 1 1.5354 -7.4601 -0.8902 29 1 1.5361 -7.4604 0.8897 30 1 3.9369 -8.0795 0.8894 31 1 3.9369 -8.0794 -0.8906 32 1 2.2159 -9.8641 -0.8913 33 1 2.2156 -9.8647 0.8886 34 1 4.0812 -10.8126 -2.0904 35 1 5.0580 -9.4930 -1.4007 36 1 6.5986 -11.1263 -0.3914 37 1 6.4652 -11.4264 -2.1412 38 1 5.3798 -12.6334 1.1313 39 1 4.4237 -13.9502 0.4091 40 1 2.9884 -12.0525 1.1851 41 1 2.8652 -12.3155 -0.5714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243807985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:48 Heat of formation + Delta-G solvation = -34.126304 kcal Electronic energy + Delta-G solvation = -19913.196993 eV Core-core repulsion = 16760.920864 eV Total energy + Delta-G solvation = -3152.276129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99474 -38.46408 -36.74412 -35.19362 -32.92373 -31.82895 -31.45210 -28.24599 -27.04088 -24.57938 -24.37257 -23.02760 -22.59584 -21.52133 -20.75081 -18.15578 -17.22269 -16.58922 -16.35821 -16.08370 -16.02015 -15.48001 -15.24009 -14.91806 -14.78214 -14.66347 -14.03072 -13.88078 -13.46795 -12.98337 -12.64185 -12.37238 -12.18984 -11.93393 -11.76320 -11.75289 -11.31416 -11.08988 -11.00122 -10.91134 -10.58376 -10.45551 -10.35597 -10.09238 -9.53439 -8.86901 -8.82893 -8.24049 -7.17820 -6.71242 -6.23464 -4.33759 2.12614 2.62323 3.10505 3.18511 3.25531 3.27980 3.39574 3.51161 4.17059 4.36639 4.42361 4.50350 4.54483 4.72031 4.73409 4.81852 4.88513 4.98467 5.09251 5.11731 5.19705 5.27129 5.35649 5.37511 5.44993 5.53298 5.60254 5.89889 5.93993 6.45246 6.50432 6.54811 6.70310 6.71715 7.34833 7.41347 7.43238 7.65669 7.85116 8.22847 8.71270 9.31799 10.85184 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.036973 B = 0.002366 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.136108 B =11832.916995 C =12425.768386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.556 4.556 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.653 5.653 11 C 0.556 3.444 12 S -0.675 6.675 13 N -0.704 5.704 14 C 0.133 3.867 15 C -0.129 4.129 16 C 0.060 3.940 17 N -0.537 5.537 18 C 0.013 3.987 19 C 0.063 3.937 20 O -0.387 6.387 21 C 0.063 3.937 22 C 0.017 3.983 23 H 0.268 0.732 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.389 0.611 27 H 0.391 0.609 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.028 -22.849 -0.340 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.594 4.594 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.276 5.276 11 C 0.193 3.807 12 S -0.551 6.551 13 N -0.338 5.338 14 C 0.008 3.992 15 C -0.167 4.167 16 C -0.068 4.068 17 N -0.263 5.263 18 C -0.115 4.115 19 C -0.014 4.014 20 O -0.306 6.306 21 C -0.014 4.014 22 C -0.112 4.112 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.224 0.776 27 H 0.226 0.774 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.947 -22.890 -0.080 25.820 hybrid contribution 1.507 1.348 -0.483 2.079 sum 13.454 -21.541 -0.563 25.404 Atomic orbital electron populations 1.69995 1.05985 1.27437 1.47700 1.24911 0.94939 0.99365 0.94457 0.86342 0.79660 0.82867 0.77916 1.19758 1.20647 1.20635 1.21182 0.93166 0.90314 1.54771 0.92019 1.19638 0.87481 0.79587 1.00183 1.45983 1.11655 1.04226 1.65711 1.22147 0.94868 0.82358 0.81370 1.93216 0.94609 1.91410 1.75885 1.44796 1.07778 1.05601 1.75626 1.21415 0.95780 0.77525 1.04461 1.21806 0.98054 0.93652 1.03238 1.21986 0.91584 0.91252 1.01993 1.62200 1.24143 1.05784 1.34127 1.22869 0.96426 1.01348 0.90901 1.22676 0.94997 0.81854 1.01845 1.87991 1.72846 1.28192 1.41546 1.22670 0.91926 0.99535 0.87226 1.22795 0.97644 0.88524 1.02187 0.92246 0.93235 0.93231 0.77641 0.77363 0.90178 0.89958 0.90413 0.91434 0.93917 0.89831 0.93741 0.89247 0.92216 0.88435 0.92202 0.88412 0.89357 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.56 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.25 6.39 4.88 -5.20 -0.03 6.36 16 10 N -0.65 -12.95 5.55 -63.22 -0.35 -13.30 16 11 C 0.56 10.50 7.98 -86.92 -0.69 9.80 16 12 S -0.67 -15.88 27.77 -107.50 -2.99 -18.87 16 13 N -0.70 -9.36 5.56 -62.04 -0.34 -9.71 16 14 C 0.13 1.53 5.13 -4.04 -0.02 1.51 16 15 C -0.13 -1.04 5.26 -26.73 -0.14 -1.18 16 16 C 0.06 0.47 4.96 -3.82 -0.02 0.45 16 17 N -0.54 -4.20 4.73 -234.31 -1.11 -5.30 16 18 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 19 C 0.06 0.45 7.01 37.21 0.26 0.71 16 20 O -0.39 -3.44 10.83 -35.23 -0.38 -3.82 16 21 C 0.06 0.43 7.01 37.21 0.26 0.69 16 22 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 23 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.05 1.41 7.99 -51.93 -0.42 1.00 16 25 H 0.05 1.42 7.99 -51.93 -0.41 1.00 16 26 H 0.39 6.46 8.34 -40.82 -0.34 6.12 16 27 H 0.39 3.98 8.49 -40.82 -0.35 3.63 16 28 H 0.08 1.04 7.99 -51.93 -0.41 0.62 16 29 H 0.08 1.06 7.99 -51.93 -0.42 0.65 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.51 6.52 -51.92 -0.34 0.17 16 32 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.58 6.38 -51.93 -0.33 0.25 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 41 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -33.22 345.46 -11.85 -45.07 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.77 Total: 4.55 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.84 Total: 5.37 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -1.07 Total: -52.89 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.38 Total: -3.82 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -15.88 SS G_CDS: -2.99 Total: -18.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.22 -11.85 -45.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243807985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.943 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds