Wall clock time and date at job start Fri Apr 10 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47103 * 300.00540 * 3 2 1 6 6 H 1.48502 * 109.46704 * 60.00692 * 3 2 1 7 7 C 1.37878 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00396 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47475 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00022 * 179.97438 * 10 9 7 12 12 S 1.71194 * 120.00171 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99801 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00168 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47277 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47044 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.46953 * 180.02562 * 16 15 14 18 18 C 1.47015 * 110.99642 * 293.62955 * 17 16 15 19 19 C 1.53098 * 109.25723 * 177.60943 * 18 17 16 20 20 O 1.43023 * 109.25952 * 56.85124 * 19 18 17 21 21 C 1.43014 * 113.73189 * 301.32868 * 20 19 18 22 22 C 1.47016 * 110.99994 * 169.99953 * 17 16 15 23 23 H 0.96993 * 120.00173 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47391 * 59.99763 * 9 7 2 25 25 H 1.09000 * 109.46941 * 300.00226 * 9 7 2 26 26 H 0.96999 * 119.99846 * 0.02562 * 10 9 7 27 27 H 0.97003 * 120.00288 * 0.02562 * 13 11 10 28 28 H 1.08994 * 109.46874 * 59.99714 * 14 13 11 29 29 H 1.09000 * 109.47084 * 300.00188 * 14 13 11 30 30 H 1.08994 * 109.47742 * 59.99830 * 15 14 13 31 31 H 1.09009 * 109.47009 * 299.99684 * 15 14 13 32 32 H 1.08994 * 109.47199 * 59.99242 * 16 15 14 33 33 H 1.08996 * 109.46529 * 299.99637 * 16 15 14 34 34 H 1.08999 * 109.50673 * 297.54208 * 18 17 16 35 35 H 1.09004 * 109.50788 * 57.67624 * 18 17 16 36 36 H 1.08997 * 109.51060 * 296.91507 * 19 18 17 37 37 H 1.08998 * 109.54334 * 176.80599 * 19 18 17 38 38 H 1.08999 * 109.51224 * 298.73604 * 21 20 19 39 39 H 1.09005 * 109.53853 * 178.62625 * 21 20 19 40 40 H 1.09000 * 109.50136 * 302.32362 * 22 17 16 41 41 H 1.08996 * 109.50988 * 62.41201 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 16 0.0707 -5.1963 0.0000 13 7 2.6296 -5.9078 -0.0005 14 6 2.1413 -7.2890 -0.0005 15 6 3.3313 -8.2507 -0.0005 16 6 2.8213 -9.6932 -0.0012 17 7 3.9638 -10.6165 -0.0006 18 6 4.7202 -10.5194 -1.2575 19 6 5.9326 -11.4519 -1.1905 20 8 5.4880 -12.7857 -0.9278 21 6 4.7483 -12.9166 0.2892 22 6 3.5239 -11.9990 0.2372 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0002 27 1 3.5833 -5.7306 -0.0009 28 1 1.5354 -7.4601 -0.8902 29 1 1.5361 -7.4604 0.8897 30 1 3.9369 -8.0795 0.8894 31 1 3.9369 -8.0794 -0.8906 32 1 2.2159 -9.8641 -0.8913 33 1 2.2156 -9.8647 0.8886 34 1 4.0812 -10.8126 -2.0904 35 1 5.0580 -9.4930 -1.4007 36 1 6.5986 -11.1263 -0.3914 37 1 6.4652 -11.4264 -2.1412 38 1 5.3798 -12.6334 1.1313 39 1 4.4237 -13.9502 0.4091 40 1 2.9884 -12.0525 1.1851 41 1 2.8652 -12.3155 -0.5714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243807985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:48 Heat of formation + Delta-G solvation = -59.099298 kcal Electronic energy + Delta-G solvation = -19914.279903 eV Core-core repulsion = 16760.920864 eV Total energy + Delta-G solvation = -3153.359039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59247 -39.90226 -37.64338 -36.48854 -34.74308 -32.83884 -32.08378 -29.67197 -28.26271 -25.63394 -25.03242 -24.51797 -24.35434 -22.37116 -21.33206 -19.78027 -18.30394 -17.99129 -17.41931 -17.19481 -16.81031 -16.62594 -16.09535 -16.01627 -15.95076 -15.69928 -15.26842 -15.15776 -14.70175 -14.18965 -14.02041 -13.40153 -13.04405 -12.92833 -12.86970 -12.69030 -12.59555 -12.33800 -12.23517 -12.20719 -12.15021 -11.70300 -11.51314 -11.42169 -10.77507 -10.66910 -9.88838 -9.43990 -9.04578 -8.61401 -8.28969 -6.48050 0.49978 0.99795 1.43178 1.44403 1.56549 1.70164 2.35882 2.67749 2.85692 2.98057 3.05440 3.82002 3.91732 3.92837 4.03114 4.08705 4.20951 4.29797 4.38507 4.50694 4.55842 4.65893 4.73217 4.75266 4.82997 4.88930 4.96336 4.97082 5.01068 5.11025 5.20982 5.23790 5.40249 5.75833 5.82856 5.92028 5.92831 6.07417 6.18483 6.54677 6.74216 7.23926 8.81613 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.036973 B = 0.002366 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.136108 B =11832.916995 C =12425.768386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.984 3.016 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.564 4.564 8 H 0.084 0.916 9 C 0.276 3.724 10 N -0.648 5.648 11 C 0.579 3.421 12 S -0.765 6.765 13 N -0.667 5.667 14 C 0.133 3.867 15 C -0.111 4.111 16 C 0.061 3.939 17 N -0.541 5.541 18 C 0.012 3.988 19 C 0.061 3.939 20 O -0.409 6.409 21 C 0.062 3.938 22 C 0.016 3.984 23 H 0.270 0.730 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.410 0.590 27 H 0.416 0.584 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.260 -23.013 -0.201 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.602 4.602 8 H 0.102 0.898 9 C 0.154 3.846 10 N -0.273 5.273 11 C 0.212 3.788 12 S -0.643 6.643 13 N -0.300 5.300 14 C 0.009 3.991 15 C -0.150 4.150 16 C -0.067 4.067 17 N -0.266 5.266 18 C -0.116 4.116 19 C -0.016 4.016 20 O -0.328 6.328 21 C -0.015 4.015 22 C -0.112 4.112 23 H 0.079 0.921 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.249 0.751 27 H 0.255 0.745 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.269 -23.126 0.060 27.712 hybrid contribution 0.560 1.252 -0.524 1.469 sum 15.829 -21.874 -0.464 27.005 Atomic orbital electron populations 1.70157 1.08147 1.28597 1.49091 1.25991 0.95725 1.03669 0.93795 0.85130 0.79025 0.77500 0.77662 1.17676 1.20548 1.20531 1.21589 0.94275 0.90395 1.53960 0.89777 1.18927 0.87626 0.81518 0.96558 1.45409 1.11917 1.03365 1.66611 1.21556 0.93566 0.83072 0.80567 1.93437 0.99580 1.91940 1.79358 1.44756 1.08330 1.05049 1.71845 1.21550 0.97366 0.76769 1.03417 1.21656 0.96343 0.92573 1.04379 1.21938 0.91715 0.91139 1.01891 1.62220 1.23931 1.06106 1.34371 1.22909 0.96316 1.02023 0.90324 1.22791 0.94942 0.81140 1.02685 1.87963 1.73179 1.29225 1.42424 1.22790 0.91650 1.00383 0.86667 1.22840 0.97779 0.88168 1.02429 0.92147 0.97208 0.97205 0.75117 0.74472 0.91343 0.91011 0.89395 0.90041 0.94491 0.89678 0.94694 0.88168 0.91878 0.87183 0.91918 0.86992 0.88310 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 13.29 21.45 0.28 -54.31 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.98 41.15 29.54 68.60 2.03 43.18 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.56 -29.27 9.28 25.60 0.24 -29.03 16 8 H 0.08 3.90 7.60 -2.91 -0.02 3.87 16 9 C 0.28 14.36 4.88 85.63 0.42 14.78 16 10 N -0.65 -25.11 5.55 -353.92 -1.97 -27.07 16 11 C 0.58 21.52 7.98 179.05 1.43 22.95 16 12 S -0.77 -37.32 27.77 -56.49 -1.57 -38.89 16 13 N -0.67 -16.18 5.56 -350.18 -1.95 -18.12 16 14 C 0.13 2.85 5.13 86.38 0.44 3.29 16 15 C -0.11 -1.48 5.26 30.60 0.16 -1.32 16 16 C 0.06 0.85 4.96 86.31 0.43 1.28 16 17 N -0.54 -7.36 4.73 -895.22 -4.23 -11.60 16 18 C 0.01 0.15 5.44 86.31 0.47 0.62 16 19 C 0.06 0.75 7.01 72.01 0.50 1.25 16 20 O -0.41 -6.69 10.83 -148.98 -1.61 -8.30 16 21 C 0.06 0.74 7.01 72.01 0.50 1.25 16 22 C 0.02 0.20 5.64 86.31 0.49 0.69 16 23 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.01 0.59 7.99 -2.39 -0.02 0.57 16 25 H 0.01 0.60 7.99 -2.39 -0.02 0.58 16 26 H 0.41 12.53 8.34 -92.71 -0.77 11.76 16 27 H 0.42 6.77 8.49 -92.71 -0.79 5.99 16 28 H 0.07 1.72 7.99 -2.39 -0.02 1.70 16 29 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 0.92 6.52 -2.38 -0.02 0.90 16 32 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 33 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 34 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 1.01 6.38 -2.38 -0.02 1.00 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.10 1.00 8.09 -2.39 -0.02 0.99 16 41 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -74.83 345.46 -4.00 -78.83 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.53 Total: 19.57 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.54 Total: 16.72 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -7.86 Total: -111.10 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -1.61 Total: -8.30 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: -37.32 SS G_CDS: -1.57 Total: -38.89 kcal Total: -74.83 -4.00 -78.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243807985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.730 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds