Wall clock time and date at job start Fri Apr 10 2020 15:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46960 * 299.99611 * 3 2 1 6 6 H 1.48501 * 109.47008 * 59.99714 * 3 2 1 7 7 C 1.37880 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.53046 * 109.46025 * 175.00183 * 10 9 7 12 12 C 1.53196 * 109.31366 * 181.38511 * 11 10 9 13 13 N 1.46925 * 108.77419 * 305.36458 * 12 11 10 14 14 C 1.34777 * 120.62933 * 233.58799 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27723 * 14 13 12 17 17 C 1.53782 * 113.61231 * 277.21964 * 16 14 13 18 18 C 1.53783 * 87.08057 * 220.02148 * 17 16 14 19 19 F 1.39900 * 113.61176 * 270.88334 * 18 17 16 20 20 F 1.39897 * 113.61424 * 139.98061 * 18 17 16 21 21 C 1.53780 * 87.08189 * 25.43154 * 18 17 16 22 22 C 1.46931 * 118.73924 * 53.85839 * 13 12 11 23 23 C 1.53036 * 109.46103 * 295.06931 * 10 9 7 24 24 H 0.97002 * 120.00268 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46798 * 60.00127 * 9 7 2 26 26 H 1.08999 * 109.47181 * 300.00473 * 9 7 2 27 27 H 1.08996 * 109.46427 * 55.02909 * 10 9 7 28 28 H 1.08997 * 109.49431 * 61.42971 * 11 10 9 29 29 H 1.08999 * 109.52034 * 301.35491 * 11 10 9 30 30 H 1.08994 * 109.58453 * 185.57881 * 12 11 10 31 31 H 1.09001 * 109.70084 * 65.22264 * 12 11 10 32 32 H 1.08997 * 112.84664 * 48.52304 * 16 14 13 33 33 H 1.09002 * 113.61515 * 334.56488 * 17 16 14 34 34 H 1.08999 * 113.61482 * 105.47097 * 17 16 14 35 35 H 1.08999 * 113.61557 * 220.02482 * 21 18 17 36 36 H 1.08997 * 113.68869 * 89.12802 * 21 18 17 37 37 H 1.09000 * 109.58052 * 65.92898 * 22 13 12 38 38 H 1.08995 * 109.58699 * 186.35097 * 22 13 12 39 39 H 1.09003 * 109.49561 * 298.56785 * 23 10 9 40 40 H 1.08996 * 109.50266 * 58.62832 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4840 -4.9836 0.1296 12 6 2.4844 -6.1433 0.1652 13 7 3.3505 -6.0570 -1.0186 14 6 3.4923 -7.1129 -1.8440 15 8 2.9024 -8.1471 -1.6126 16 6 4.3892 -7.0109 -3.0508 17 6 3.7156 -6.3497 -4.2648 18 6 4.4256 -7.4020 -5.1327 19 9 5.6973 -7.0082 -5.5628 20 9 3.6307 -7.9020 -6.1697 21 6 4.4482 -8.3012 -3.8854 22 6 4.0637 -4.7997 -1.2820 23 6 3.0413 -3.6534 -1.3043 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5563 0.8919 27 1 2.9290 -3.5545 0.8448 28 1 0.8183 -5.1034 -0.7250 29 1 0.8985 -4.9799 1.0491 30 1 1.9459 -7.0908 0.1556 31 1 3.0917 -6.0771 1.0679 32 1 5.3701 -6.5979 -2.8153 33 1 2.6296 -6.4432 -4.2662 34 1 4.0539 -5.3302 -4.4504 35 1 5.3779 -8.8571 -3.7646 36 1 3.5631 -8.9289 -3.7820 37 1 4.7970 -4.6239 -0.4949 38 1 4.5676 -4.8607 -2.2466 39 1 2.3609 -3.7858 -2.1455 40 1 3.5642 -2.7024 -1.4056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:42 Heat of formation + Delta-G solvation = -148.918168 kcal Electronic energy + Delta-G solvation = -23344.473096 eV Core-core repulsion = 19601.086080 eV Total energy + Delta-G solvation = -3743.387015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85834 -48.20189 -41.54104 -39.12596 -37.74783 -35.68983 -33.97995 -32.09698 -29.91154 -27.59819 -27.29324 -25.92278 -24.13682 -23.46609 -21.88637 -20.97700 -19.86577 -18.89428 -18.39468 -17.90997 -17.65412 -17.26595 -16.59309 -16.51198 -16.21835 -15.48809 -15.24655 -15.06511 -14.94101 -14.67058 -14.50022 -14.40442 -14.12081 -13.95754 -13.64653 -13.36073 -13.07023 -12.98731 -12.68699 -12.57018 -12.46079 -12.42641 -12.28713 -12.07533 -11.71704 -11.47204 -11.33808 -11.11174 -10.82252 -10.76703 -10.51095 -9.61517 -8.14827 -6.24167 1.42432 1.43934 1.48078 1.55521 1.94841 2.42150 2.44275 2.73783 3.16892 3.19581 3.25525 3.30144 3.72943 3.96860 4.06223 4.15341 4.22840 4.25214 4.36926 4.43555 4.45264 4.54767 4.64420 4.70619 4.71874 4.85347 4.91266 4.97404 5.07326 5.13486 5.33353 5.35452 5.43241 5.56480 5.61603 5.84406 5.91961 6.30520 6.41798 6.93542 7.09307 7.45049 8.97351 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.003818 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.539219 B = 7332.488032 C = 8103.938614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.003 4.003 3 Si 0.958 3.042 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.523 4.523 8 H 0.069 0.931 9 C 0.031 3.969 10 C -0.074 4.074 11 C -0.122 4.122 12 C 0.118 3.882 13 N -0.602 5.602 14 C 0.526 3.474 15 O -0.580 6.580 16 C -0.126 4.126 17 C -0.147 4.147 18 C 0.254 3.746 19 F -0.180 7.180 20 F -0.200 7.200 21 C -0.137 4.137 22 C 0.110 3.890 23 C -0.115 4.115 24 H 0.260 0.740 25 H -0.016 1.016 26 H -0.017 1.017 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.049 0.951 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.686 -13.924 -6.746 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.179 1.179 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.006 4.006 10 C -0.093 4.093 11 C -0.160 4.160 12 C -0.004 4.004 13 N -0.334 5.334 14 C 0.315 3.685 15 O -0.461 6.461 16 C -0.146 4.146 17 C -0.185 4.185 18 C 0.217 3.783 19 F -0.161 7.161 20 F -0.181 7.181 21 C -0.176 4.176 22 C -0.012 4.012 23 C -0.153 4.153 24 H 0.069 0.931 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.261 -14.348 -6.653 20.012 hybrid contribution -0.443 1.206 -0.051 1.286 sum 11.819 -13.142 -6.704 18.903 Atomic orbital electron populations 1.70116 1.07959 1.27380 1.52515 1.25953 0.95570 1.03259 0.95253 0.85493 0.79541 0.79278 0.77309 1.17878 1.20953 1.21124 1.21707 0.93688 0.91706 1.49035 0.91267 1.19033 0.94102 0.93299 0.94151 1.21045 0.97021 0.93271 0.97924 1.21905 0.97807 0.94664 1.01625 1.21568 0.92459 0.98759 0.87651 1.48234 1.46024 1.13435 1.25678 1.20523 0.81667 0.82542 0.83742 1.90669 1.49959 1.30633 1.74796 1.22610 1.01335 0.99200 0.91502 1.24070 1.02488 1.00796 0.91175 1.22080 0.76349 0.97138 0.82692 1.93023 1.40069 1.91555 1.91444 1.92999 1.73448 1.88544 1.63128 1.23962 1.07320 0.96990 0.89284 1.22116 0.94014 0.81296 1.03790 1.21870 0.97840 0.98567 0.96993 0.93136 0.99718 0.99822 0.91861 0.93554 0.91296 0.90118 0.89935 0.82685 0.87250 0.86003 0.86508 0.86885 0.89445 0.87152 0.93260 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.13 13.29 21.45 0.28 -55.84 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 3 Si 0.96 42.48 29.54 68.60 2.03 44.50 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.52 -27.58 8.39 25.60 0.21 -27.37 16 8 H 0.07 3.40 7.06 -2.91 -0.02 3.38 16 9 C 0.03 1.54 4.45 29.85 0.13 1.68 16 10 C -0.07 -2.67 2.10 -10.77 -0.02 -2.69 16 11 C -0.12 -3.86 5.36 30.68 0.16 -3.69 16 12 C 0.12 3.09 6.43 86.36 0.56 3.65 16 13 N -0.60 -14.33 2.97 -818.06 -2.43 -16.76 16 14 C 0.53 12.56 7.22 87.66 0.63 13.20 16 15 O -0.58 -17.99 15.31 -3.04 -0.05 -18.04 16 16 C -0.13 -2.03 2.70 -11.01 -0.03 -2.06 16 17 C -0.15 -2.39 7.02 31.12 0.22 -2.17 16 18 C 0.25 4.51 3.28 31.12 0.10 4.61 16 19 F -0.18 -3.34 17.38 44.97 0.78 -2.55 16 20 F -0.20 -4.43 17.41 44.97 0.78 -3.64 16 21 C -0.14 -2.23 7.19 31.12 0.22 -2.01 16 22 C 0.11 2.26 6.33 86.51 0.55 2.80 16 23 C -0.11 -3.43 5.21 30.82 0.16 -3.27 16 24 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 25 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.24 7.00 -2.39 -0.02 2.22 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.16 1.64 7.46 -2.39 -0.02 1.63 16 33 H 0.11 2.01 8.09 -2.39 -0.02 1.99 16 34 H 0.12 1.58 7.98 -2.39 -0.02 1.56 16 35 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 2.18 7.43 -2.39 -0.02 2.16 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.59 5.48 -2.39 -0.01 1.58 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 2.45 6.91 -2.39 -0.02 2.44 16 Total: -1.00 -67.10 327.34 5.80 -61.30 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.03 Total: 8.08 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 3.36 Total: -17.05 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.14 Total: -72.60 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.04 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.56 Total: -6.20 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -67.10 5.80 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.619 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds