Wall clock time and date at job start Fri Apr 10 2020 15:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41062 * 120.89949 * 2 1 4 4 C 1.40056 * 121.95104 * 359.97438 * 3 2 1 5 5 C 1.36326 * 119.51035 * 180.02562 * 4 3 2 6 6 C 1.39453 * 121.55157 * 359.95259 * 5 4 3 7 7 F 1.35103 * 119.17873 * 180.02562 * 6 5 4 8 8 C 1.36294 * 121.65092 * 0.02610 * 6 5 4 9 9 C 1.40796 * 119.46773 * 0.02562 * 8 6 5 10 10 N 1.33055 * 121.73745 * 180.25020 * 9 8 6 11 11 C 1.33031 * 120.94154 * 180.26018 * 10 9 8 12 12 C 1.41237 * 119.02188 * 179.72016 * 11 10 9 13 13 H 1.08004 * 119.99705 * 109.11514 * 12 11 10 14 14 C 1.40164 * 120.00324 * 289.11281 * 12 11 10 15 15 N 1.30661 * 119.99453 * 4.02947 * 14 12 11 16 16 Si 1.86793 * 120.00092 * 184.30322 * 14 12 11 17 17 H 1.48501 * 109.47007 * 179.72601 * 16 14 12 18 18 H 1.48500 * 109.47305 * 299.72309 * 16 14 12 19 19 H 1.48493 * 109.47175 * 59.72622 * 16 14 12 20 20 C 1.35998 * 120.89941 * 179.97438 * 2 1 3 21 21 C 1.50700 * 119.79528 * 0.02562 * 20 2 1 22 22 C 1.52997 * 109.47214 * 187.01152 * 21 20 2 23 23 C 1.53000 * 109.47340 * 307.01412 * 21 20 2 24 24 C 1.53003 * 109.46965 * 67.01381 * 21 20 2 25 25 H 1.09002 * 109.47098 * 271.99264 * 1 2 3 26 26 H 1.09002 * 109.47293 * 31.99035 * 1 2 3 27 27 H 1.09001 * 109.47441 * 151.99182 * 1 2 3 28 28 H 1.08009 * 120.24516 * 359.95656 * 4 3 2 29 29 H 1.07999 * 119.22349 * 179.97438 * 5 4 3 30 30 H 1.07993 * 120.26827 * 180.02562 * 8 6 5 31 31 H 0.97001 * 120.00531 * 354.95673 * 15 14 12 32 32 H 1.08999 * 109.47223 * 57.03896 * 22 21 20 33 33 H 1.08996 * 109.47232 * 177.03418 * 22 21 20 34 34 H 1.09002 * 109.47596 * 297.03633 * 22 21 20 35 35 H 1.09002 * 109.47061 * 59.99983 * 23 21 20 36 36 H 1.08999 * 109.47415 * 179.97438 * 23 21 20 37 37 H 1.08993 * 109.46867 * 300.00260 * 23 21 20 38 38 H 1.08997 * 109.47267 * 71.72845 * 24 21 20 39 39 H 1.08999 * 109.47052 * 191.72602 * 24 21 20 40 40 H 1.08997 * 109.47573 * 311.72517 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2313 1.2104 0.0000 4 6 1.5922 2.4567 -0.0005 5 6 2.3415 3.5956 -0.0010 6 6 3.7353 3.5520 -0.0001 7 9 4.4305 4.7105 -0.0001 8 6 4.4140 2.3701 0.0009 9 6 3.6958 1.1590 0.0004 10 7 4.3120 -0.0202 0.0063 11 6 3.6177 -1.1549 0.0005 12 6 4.3134 -2.3840 0.0010 13 1 4.3087 -3.0067 0.8834 14 6 5.0100 -2.7956 -1.1435 15 7 5.0816 -2.0075 -2.1833 16 14 5.8292 -4.4738 -1.1852 17 1 6.4895 -4.6696 -2.5008 18 1 6.8446 -4.5559 -0.1047 19 1 4.8050 -5.5298 -0.9834 20 6 2.2053 -1.1670 0.0005 21 6 1.4677 -2.4811 0.0005 22 6 2.4664 -3.6266 0.1772 23 6 0.4603 -2.5006 1.1519 24 6 0.7273 -2.6504 -1.3277 25 1 -0.3633 0.0357 1.0271 26 1 -0.3634 0.8716 -0.5444 27 1 -0.3634 -0.9073 -0.4826 28 1 0.5137 2.5150 -0.0017 29 1 1.8439 4.5541 -0.0019 30 1 5.4939 2.3624 0.0021 31 1 4.5926 -1.1698 -2.1916 32 1 3.0308 -3.4778 1.0978 33 1 1.9283 -4.5729 0.2301 34 1 3.1518 -3.6451 -0.6702 35 1 -0.2512 -1.6845 1.0260 36 1 -0.0735 -3.4509 1.1517 37 1 0.9877 -2.3799 2.0981 38 1 1.4472 -2.8450 -2.1227 39 1 0.0336 -3.4877 -1.2528 40 1 0.1738 -1.7391 -1.5539 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558123089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:04:04 Heat of formation + Delta-G solvation = 17.398861 kcal Electronic energy + Delta-G solvation = -23451.480836 eV Core-core repulsion = 20146.075093 eV Total energy + Delta-G solvation = -3305.405743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.98770 -41.77292 -39.14334 -37.02125 -35.56130 -34.19225 -31.71574 -30.23706 -29.47774 -28.39382 -27.95433 -26.05066 -24.26409 -23.97769 -21.96769 -20.69562 -19.59735 -19.00955 -18.07127 -17.21959 -16.69695 -16.51840 -16.14647 -15.79132 -15.59938 -15.29296 -15.10222 -14.94098 -14.63524 -14.21214 -13.98180 -13.80776 -13.60882 -13.16209 -13.07322 -12.73008 -12.67305 -12.52497 -12.32933 -12.12796 -12.05994 -11.97112 -11.71314 -11.58935 -11.05527 -10.88256 -10.70160 -10.39373 -9.87227 -9.19370 -8.98235 -8.73373 -6.24007 -0.46112 -0.04127 1.23521 1.52589 1.57780 1.77467 2.00656 2.45906 2.93541 3.18148 3.33210 3.54851 3.80553 3.93760 4.00187 4.08593 4.21596 4.26350 4.32829 4.36809 4.58210 4.60990 4.77878 4.86536 4.89826 4.93615 4.99125 5.03996 5.08254 5.13118 5.18699 5.24685 5.26615 5.28446 5.42828 5.52282 5.63415 5.68818 5.74815 5.92711 5.97271 6.13598 6.16009 6.62928 7.08616 7.64294 8.46981 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.007067 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.191089 B = 3961.297739 C = 5343.874461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.036 4.036 3 C -0.173 4.173 4 C -0.036 4.036 5 C -0.186 4.186 6 C 0.118 3.882 7 F -0.145 7.145 8 C -0.184 4.184 9 C 0.134 3.866 10 N -0.564 5.564 11 C 0.296 3.704 12 C -0.566 4.566 13 H 0.095 0.905 14 C 0.001 3.999 15 N -0.881 5.881 16 Si 1.105 2.895 17 H -0.285 1.285 18 H -0.271 1.271 19 H -0.243 1.243 20 C -0.148 4.148 21 C -0.011 4.011 22 C -0.134 4.134 23 C -0.151 4.151 24 C -0.140 4.140 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.175 0.825 29 H 0.167 0.833 30 H 0.118 0.882 31 H 0.261 0.739 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.080 0.920 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.476 2.296 3.849 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.042 4.042 3 C -0.176 4.176 4 C -0.054 4.054 5 C -0.205 4.205 6 C 0.097 3.903 7 F -0.124 7.124 8 C -0.204 4.204 9 C 0.008 3.992 10 N -0.277 5.277 11 C 0.155 3.845 12 C -0.603 4.603 13 H 0.113 0.887 14 C -0.206 4.206 15 N -0.511 5.511 16 Si 0.924 3.076 17 H -0.211 1.211 18 H -0.196 1.196 19 H -0.167 1.167 20 C -0.151 4.151 21 C -0.012 4.012 22 C -0.190 4.190 23 C -0.207 4.207 24 C -0.196 4.196 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.192 0.808 29 H 0.184 0.816 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.592 1.429 2.926 12.041 hybrid contribution -0.354 1.588 0.796 1.811 sum -11.946 3.017 3.721 12.871 Atomic orbital electron populations 1.21460 0.87706 1.05033 1.04095 1.20168 0.97916 0.90591 0.95569 1.19991 0.92863 0.95695 1.09036 1.21105 1.01265 0.89062 0.93959 1.20917 0.90372 1.01443 1.07722 1.17370 0.90873 0.80058 1.01950 1.91456 1.79842 1.47106 1.93987 1.20607 1.00092 0.90692 1.09026 1.20245 0.90776 0.92496 0.95666 1.69190 1.40369 0.97982 1.20200 1.19249 0.90034 0.91448 0.83781 1.20313 1.34549 1.02708 1.02710 0.88704 1.27779 0.94115 1.07064 0.91668 1.70465 1.36248 1.11466 1.32931 0.83202 0.76934 0.70747 0.76739 1.21080 1.19573 1.16655 1.21259 0.94593 0.96345 1.02932 1.19264 0.94632 0.90906 0.96359 1.22850 0.97856 0.94748 1.03529 1.22320 0.98527 1.03785 0.96105 1.22049 0.99498 1.02651 0.95445 0.88505 0.89540 0.88210 0.80764 0.81560 0.86351 0.92876 0.93362 0.95038 0.90707 0.89181 0.90971 0.94511 0.95579 0.90154 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 7.27 71.23 0.52 -2.45 16 2 C -0.04 -1.31 5.63 -19.70 -0.11 -1.42 16 3 C -0.17 -6.73 5.89 -19.98 -0.12 -6.85 16 4 C -0.04 -1.04 9.33 22.26 0.21 -0.83 16 5 C -0.19 -5.35 9.88 22.12 0.22 -5.13 16 6 C 0.12 4.24 7.21 22.11 0.16 4.40 16 7 F -0.15 -4.94 17.23 44.97 0.77 -4.16 16 8 C -0.18 -8.01 9.98 22.44 0.22 -7.79 16 9 C 0.13 6.45 6.75 41.75 0.28 6.73 16 10 N -0.56 -31.10 9.79 -178.60 -1.75 -32.85 16 11 C 0.30 15.45 5.04 40.44 0.20 15.65 16 12 C -0.57 -29.77 5.06 23.48 0.12 -29.65 16 13 H 0.10 4.82 5.37 -2.91 -0.02 4.80 16 14 C 0.00 0.07 4.54 85.33 0.39 0.46 16 15 N -0.88 -52.28 13.59 21.86 0.30 -51.98 16 16 Si 1.10 46.08 29.10 68.60 2.00 48.08 16 17 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.24 -8.81 7.11 99.48 0.71 -8.10 16 20 C -0.15 -6.30 4.79 -19.65 -0.09 -6.39 16 21 C -0.01 -0.38 0.75 -52.93 -0.04 -0.42 16 22 C -0.13 -5.23 6.54 71.98 0.47 -4.76 16 23 C -0.15 -4.07 8.02 71.98 0.58 -3.50 16 24 C -0.14 -4.35 8.15 71.98 0.59 -3.76 16 25 H 0.10 1.85 7.20 -2.39 -0.02 1.84 16 26 H 0.09 1.59 6.68 -2.39 -0.02 1.58 16 27 H 0.10 2.17 3.43 -2.39 -0.01 2.16 16 28 H 0.18 3.36 6.57 -2.91 -0.02 3.34 16 29 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 31 H 0.26 16.37 7.08 -92.71 -0.66 15.71 16 32 H 0.05 2.00 5.42 -2.39 -0.01 1.99 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 3.37 3.73 -2.39 -0.01 3.36 16 35 H 0.09 1.99 3.82 -2.39 -0.01 1.98 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.02 0.95 8.09 -2.39 -0.02 0.93 16 39 H 0.08 1.99 8.09 -2.39 -0.02 1.97 16 40 H 0.07 2.00 5.09 -2.39 -0.01 1.99 16 Total: -1.00 -68.34 306.96 6.11 -62.23 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.20 Total: 24.40 kcal Atomic # 6 Polarization: -49.30 SS G_CDS: 3.59 Total: -45.71 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -1.45 Total: -84.83 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.77 Total: -4.16 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.00 Total: 48.08 kcal Total: -68.34 6.11 -62.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558123089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.625 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds