Wall clock time and date at job start Fri Apr 10 2020 15:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36822 * 121.09290 * 23.34768 * 3 2 1 5 5 N 1.36000 * 119.01809 * 180.27698 * 4 3 2 6 6 H 0.97000 * 119.28690 * 179.68161 * 5 4 3 7 7 C 1.35441 * 121.43632 * 359.70015 * 5 4 3 8 8 N 1.30149 * 122.46782 * 0.02562 * 7 5 4 9 9 C 1.35354 * 120.73524 * 359.97438 * 8 7 5 10 10 N 1.31529 * 120.74214 * 180.02562 * 9 8 7 11 11 C 1.46502 * 119.99953 * 359.97438 * 10 9 8 12 12 C 1.52999 * 109.46567 * 120.00195 * 11 10 9 13 13 C 1.53049 * 109.45630 * 185.00496 * 12 11 10 14 14 C 1.53189 * 109.31006 * 178.61578 * 13 12 11 15 15 N 1.46926 * 108.89548 * 54.56312 * 14 13 12 16 16 C 1.36935 * 120.63241 * 126.46715 * 15 14 13 17 17 H 1.07998 * 119.99991 * 331.92340 * 16 15 14 18 18 C 1.38810 * 120.00391 * 151.92989 * 16 15 14 19 19 N 1.31626 * 119.99638 * 343.16653 * 18 16 15 20 20 Si 1.86793 * 120.00463 * 163.16473 * 18 16 15 21 21 H 1.48501 * 109.47077 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47046 * 119.99803 * 20 18 16 23 23 H 1.48496 * 109.47392 * 239.99957 * 20 18 16 24 24 C 1.46960 * 118.71455 * 306.63801 * 15 14 13 25 25 C 1.53038 * 109.46175 * 64.93670 * 12 11 10 26 26 H 1.07996 * 120.48635 * 359.97400 * 4 3 2 27 27 H 1.08005 * 118.76767 * 179.97438 * 7 5 4 28 28 H 1.09006 * 109.47171 * 0.02562 * 11 10 9 29 29 H 1.08994 * 109.47332 * 240.00702 * 11 10 9 30 30 H 1.08997 * 109.45226 * 304.96723 * 12 11 10 31 31 H 1.09001 * 109.50096 * 58.66374 * 13 12 11 32 32 H 1.08999 * 109.49513 * 298.56171 * 13 12 11 33 33 H 1.09003 * 109.58937 * 174.42194 * 14 13 12 34 34 H 1.08996 * 109.58909 * 294.70052 * 14 13 12 35 35 H 0.97000 * 119.99586 * 180.02562 * 19 18 16 36 36 H 1.08994 * 109.46893 * 293.57729 * 24 15 14 37 37 H 1.09005 * 109.71148 * 173.28388 * 24 15 14 38 38 H 1.08995 * 109.49486 * 301.33604 * 25 12 11 39 39 H 1.08997 * 109.49624 * 61.39809 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2750 -1.0748 -0.4643 5 7 4.6341 -1.0312 -0.4395 6 1 5.1392 -1.7933 -0.7635 7 6 5.2977 0.0530 0.0279 8 7 4.6828 1.1082 0.4778 9 6 3.3306 1.1656 0.4963 10 7 2.7091 2.2321 0.9504 11 6 3.4811 3.3751 1.4441 12 6 3.1424 4.6155 0.6150 13 6 4.0384 5.7783 1.0478 14 6 3.7205 7.0086 0.1922 15 7 2.2813 7.2906 0.2806 16 6 1.8348 8.5335 0.6427 17 1 2.4409 9.1605 1.2798 18 6 0.6033 8.9874 0.1911 19 7 0.0167 8.3950 -0.8275 20 14 -0.2217 10.4389 1.0288 21 1 0.6367 10.9227 2.1398 22 1 -0.4196 11.5322 0.0434 23 1 -1.5383 10.0156 1.5695 24 6 1.3305 6.2121 -0.0233 25 6 1.6751 4.9907 0.8348 26 1 2.7614 -1.9472 -0.8404 27 1 6.3777 0.0411 0.0282 28 1 4.5460 3.1595 1.3564 29 1 3.2320 3.5575 2.4894 30 1 3.3085 4.4027 -0.4410 31 1 5.0841 5.5017 0.9129 32 1 3.8548 6.0079 2.0974 33 1 4.2841 7.8657 0.5608 34 1 3.9913 6.8121 -0.8451 35 1 -0.8437 8.7125 -1.1433 36 1 1.4040 5.9497 -1.0786 37 1 0.3161 6.5421 0.2014 38 1 1.0387 4.1535 0.5482 39 1 1.5137 5.2271 1.8865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571996082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:58 Heat of formation + Delta-G solvation = 112.668661 kcal Electronic energy + Delta-G solvation = -21884.092077 eV Core-core repulsion = 18635.030256 eV Total energy + Delta-G solvation = -3249.061822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10029 -37.77559 -36.62730 -35.99021 -33.77787 -32.98867 -31.66673 -30.13569 -29.54965 -26.66186 -25.43035 -24.18429 -22.43264 -21.82351 -20.72227 -20.46958 -18.84363 -18.19741 -17.69629 -16.57559 -16.12201 -15.47815 -14.71158 -14.52523 -14.23489 -13.95015 -13.43250 -13.41446 -13.30483 -13.03184 -12.94867 -12.69750 -12.64055 -12.06836 -11.83991 -11.47685 -11.13731 -10.83269 -10.58867 -10.54752 -10.44605 -10.22222 -9.99192 -9.93059 -9.77599 -9.42777 -9.19399 -8.86684 -8.31044 -7.77341 -6.48669 -5.63172 -3.05421 0.53140 1.01184 2.20254 2.78689 3.02654 3.46738 3.53827 3.56519 3.71556 3.77488 3.86474 3.98520 4.44764 4.62451 4.90446 5.13603 5.44527 5.50252 5.60641 5.69701 5.74631 5.87438 6.00863 6.21092 6.22750 6.37419 6.48506 6.50343 6.59270 6.78107 6.89563 6.97007 7.12136 7.18054 7.20090 7.55789 7.62404 7.67790 7.87467 7.94930 8.09463 8.61441 9.37464 10.01935 10.59915 11.44983 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.026081 B = 0.003527 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.324189 B = 7936.040641 C = 8694.335459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.277 3.723 3 C -0.104 4.104 4 C 0.176 3.824 5 N -0.637 5.637 6 H 0.425 0.575 7 C 0.376 3.624 8 N -0.539 5.539 9 C 0.335 3.665 10 N -0.500 5.500 11 C 0.050 3.950 12 C -0.064 4.064 13 C -0.125 4.125 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.248 4.248 17 H 0.064 0.936 18 C 0.000 4.000 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.172 3.828 25 C -0.126 4.126 26 H 0.180 0.820 27 H 0.204 0.796 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.014 0.986 35 H 0.251 0.749 36 H 0.012 0.988 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.070 -25.187 -0.104 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.039 4.039 3 C -0.121 4.121 4 C 0.043 3.957 5 N -0.256 5.256 6 H 0.262 0.738 7 C 0.079 3.921 8 N -0.261 5.261 9 C 0.055 3.945 10 N -0.217 5.217 11 C -0.080 4.080 12 C -0.084 4.084 13 C -0.165 4.165 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.046 3.954 25 C -0.166 4.166 26 H 0.197 0.803 27 H 0.220 0.780 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.465 -23.665 0.445 26.751 hybrid contribution 0.581 -0.209 -0.068 0.621 sum 13.045 -23.874 0.377 27.209 Atomic orbital electron populations 1.81243 1.11695 1.07179 1.08720 1.24615 0.91501 0.93920 0.93843 1.16573 0.86110 0.96287 1.13106 1.21917 0.83207 0.97842 0.92719 1.42229 1.05725 1.19560 1.58075 0.73782 1.24776 0.99103 0.81455 0.86816 1.69365 1.10739 1.23281 1.22677 1.20642 0.84574 0.92812 0.96427 1.73201 1.35358 1.00176 1.12962 1.22190 0.96856 0.90137 0.98769 1.20968 0.97106 0.92087 0.98193 1.22030 0.97077 0.96629 1.00763 1.20854 0.87054 0.94389 0.95584 1.44080 0.99137 1.08310 1.80121 1.19231 1.02711 0.92879 1.23005 0.91812 1.25043 1.00066 0.98255 0.96496 1.70065 1.17283 1.42961 1.24443 0.86248 0.79491 0.82214 0.78995 1.20304 1.21837 1.21637 1.20768 0.95461 0.85051 0.94103 1.22108 0.94401 0.99294 1.00761 0.80344 0.77988 0.92257 0.90911 0.92610 0.93413 0.92461 0.93050 0.96859 0.93842 0.96941 0.89842 0.92711 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.67 18.54 41.83 0.78 -5.89 16 2 C 0.28 3.74 15.09 -22.48 -0.34 3.40 16 3 C -0.10 -1.06 5.91 -104.57 -0.62 -1.68 16 4 C 0.18 0.66 11.03 -16.22 -0.18 0.48 16 5 N -0.64 -0.66 5.26 -13.72 -0.07 -0.73 16 6 H 0.43 -1.55 8.90 -40.82 -0.36 -1.91 16 7 C 0.38 1.43 12.31 -90.30 -1.11 0.32 16 8 N -0.54 -5.58 8.84 -12.15 -0.11 -5.69 16 9 C 0.34 4.53 7.61 -155.62 -1.18 3.35 16 10 N -0.50 -8.79 9.60 -58.91 -0.57 -9.35 16 11 C 0.05 0.88 5.74 -4.04 -0.02 0.86 16 12 C -0.06 -1.29 2.36 -90.58 -0.21 -1.50 16 13 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 14 C 0.15 3.42 6.51 -3.71 -0.02 3.39 16 15 N -0.59 -16.34 3.00 -172.29 -0.52 -16.86 16 16 C -0.25 -7.33 9.58 -15.06 -0.14 -7.48 16 17 H 0.06 1.84 7.88 -52.49 -0.41 1.42 16 18 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 19 N -0.90 -28.10 11.20 55.49 0.62 -27.48 16 20 Si 0.90 23.01 29.59 -169.99 -5.03 17.98 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 C 0.17 4.64 5.30 -3.69 -0.02 4.62 16 25 C -0.13 -2.91 5.26 -26.61 -0.14 -3.05 16 26 H 0.18 -0.03 8.06 -52.49 -0.42 -0.46 16 27 H 0.20 -0.20 8.06 -52.48 -0.42 -0.62 16 28 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 2.50 6.07 -51.93 -0.32 2.18 16 38 H 0.05 1.27 7.71 -51.93 -0.40 0.87 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -40.93 330.95 -9.33 -50.26 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -5.19 Total: -7.24 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -4.23 Total: 0.02 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: 0.13 Total: -66.01 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.03 Total: 17.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -40.93 -9.33 -50.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571996082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.926 kcal (2) G-P(sol) polarization free energy of solvation -40.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds