Wall clock time and date at job start Fri Apr 10 2020 15:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00010 * 2 1 4 4 H 1.48494 * 109.47448 * 240.00184 * 3 2 1 5 5 H 1.48498 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46833 * 120.00309 * 3 2 1 7 7 C 1.37876 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.53115 * 109.52167 * 175.00389 * 10 9 7 12 12 C 1.53040 * 109.27506 * 177.56186 * 11 10 9 13 13 N 1.46840 * 109.52282 * 300.81663 * 12 11 10 14 14 C 1.38389 * 110.99884 * 185.83961 * 13 12 11 15 15 N 1.32909 * 120.77603 * 0.02562 * 14 13 12 16 16 C 1.32043 * 121.19657 * 179.97438 * 15 14 13 17 17 N 1.31641 * 122.46238 * 0.02562 * 16 15 14 18 18 C 1.32897 * 120.64229 * 359.97438 * 17 16 15 19 19 N 1.37202 * 134.92251 * 179.97438 * 18 17 16 20 20 H 0.97001 * 126.27527 * 0.02562 * 19 18 17 21 21 C 1.36314 * 107.44134 * 180.28464 * 19 18 17 22 22 N 1.30141 * 109.98000 * 359.54332 * 21 19 18 23 23 C 1.35473 * 109.44228 * 0.45915 * 22 21 19 24 24 C 1.46852 * 111.19892 * 61.74738 * 13 12 11 25 25 C 1.53035 * 109.52068 * 298.25448 * 24 13 12 26 26 H 0.96997 * 120.00466 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46630 * 60.00659 * 9 7 2 28 28 H 1.08992 * 109.47535 * 300.00436 * 9 7 2 29 29 H 1.09002 * 109.57263 * 54.84219 * 10 9 7 30 30 H 1.08998 * 109.50721 * 57.62217 * 11 10 9 31 31 H 1.09000 * 109.50296 * 297.49710 * 11 10 9 32 32 H 1.09010 * 109.45974 * 180.80479 * 12 11 10 33 33 H 1.09000 * 109.46262 * 60.83693 * 12 11 10 34 34 H 1.07994 * 118.77230 * 179.97438 * 16 15 14 35 35 H 1.08007 * 125.01107 * 179.71315 * 21 19 18 36 36 H 1.08997 * 109.45899 * 58.27051 * 24 13 12 37 37 H 1.09002 * 109.46342 * 178.23966 * 24 13 12 38 38 H 1.08999 * 109.50558 * 299.24043 * 25 24 13 39 39 H 1.08999 * 109.50242 * 179.11606 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4850 -4.9853 0.1251 12 6 2.4793 -6.1471 0.0634 13 7 3.2098 -6.1006 -1.2096 14 6 4.0238 -7.2103 -1.3550 15 7 4.0728 -8.1460 -0.4124 16 6 4.8460 -9.2084 -0.5427 17 7 5.6062 -9.4036 -1.5996 18 6 5.6234 -8.5218 -2.5938 19 7 6.2809 -8.4281 -3.7943 20 1 6.9151 -9.0685 -4.1529 21 6 5.8838 -7.2671 -4.3881 22 7 5.0207 -6.6534 -3.6317 23 6 4.8172 -7.3745 -2.5030 24 6 3.9852 -4.8596 -1.3319 25 6 3.0360 -3.6594 -1.3118 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6246 -2.5572 0.8895 29 1 2.9321 -3.5554 0.8391 30 1 0.7707 -5.0738 -0.6934 31 1 0.9541 -5.0109 1.0767 32 1 1.9397 -7.0912 0.1383 33 1 3.1849 -6.0656 0.8902 34 1 4.8559 -9.9443 0.2476 35 1 6.2319 -6.9105 -5.3463 36 1 4.6837 -4.7842 -0.4986 37 1 4.5395 -4.8686 -2.2705 38 1 2.3460 -3.7270 -2.1529 39 1 3.6130 -2.7377 -1.3869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578526936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:56 Heat of formation + Delta-G solvation = 77.315445 kcal Electronic energy + Delta-G solvation = -22404.996789 eV Core-core repulsion = 19154.401937 eV Total energy + Delta-G solvation = -3250.594852 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.61039 -40.98028 -39.59740 -36.67680 -34.78916 -33.74025 -33.14411 -31.83322 -30.99572 -29.34927 -26.33838 -25.34061 -24.60442 -23.70842 -22.70892 -22.35738 -20.60435 -20.05141 -19.02457 -18.35712 -18.07402 -17.04196 -16.58995 -16.42096 -15.97581 -15.68945 -15.42195 -15.13282 -14.93851 -14.62901 -14.38657 -14.12199 -13.76873 -13.29770 -13.03678 -12.84633 -12.73827 -12.62868 -12.38977 -12.25406 -12.10962 -11.71566 -11.48108 -11.33036 -10.94518 -10.77803 -10.69829 -10.49123 -10.39797 -10.18496 -9.12701 -8.14068 -6.23539 -0.37532 0.15020 1.42135 1.44824 1.52350 1.53434 1.76133 2.27084 2.44627 2.75505 3.05468 3.19119 3.22409 3.42545 3.72179 3.94137 3.98193 4.02036 4.14657 4.29737 4.37409 4.48149 4.60729 4.66644 4.78496 4.80833 4.91840 4.98771 5.09222 5.28775 5.34265 5.38364 5.41421 5.54458 5.59344 5.80931 5.87625 5.93647 5.97613 6.31814 6.34766 6.71613 6.92267 7.11804 7.44703 8.97744 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.003672 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.197410 B = 7622.519562 C = 8308.684122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.035 3.965 10 C -0.077 4.077 11 C -0.109 4.109 12 C 0.079 3.921 13 N -0.470 5.470 14 C 0.410 3.590 15 N -0.579 5.579 16 C 0.337 3.663 17 N -0.551 5.551 18 C 0.274 3.726 19 N -0.566 5.566 20 H 0.448 0.552 21 C 0.287 3.713 22 N -0.504 5.504 23 C -0.090 4.090 24 C 0.077 3.923 25 C -0.090 4.090 26 H 0.262 0.738 27 H -0.011 1.011 28 H -0.011 1.011 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.239 0.761 35 H 0.281 0.719 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.060 -19.505 -7.555 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.095 4.095 11 C -0.147 4.147 12 C -0.047 4.047 13 N -0.185 5.185 14 C 0.162 3.838 15 N -0.304 5.304 16 C 0.047 3.953 17 N -0.274 5.274 18 C 0.030 3.970 19 N -0.183 5.183 20 H 0.292 0.708 21 C 0.000 4.000 22 N -0.223 5.223 23 C -0.215 4.215 24 C -0.048 4.048 25 C -0.128 4.128 26 H 0.070 0.930 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.255 0.745 35 H 0.296 0.704 36 H 0.060 0.940 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.140 -19.204 -7.407 24.972 hybrid contribution 0.856 0.591 -0.048 1.042 sum 14.996 -18.613 -7.455 25.038 Atomic orbital electron populations 1.70096 1.07797 1.27589 1.52151 1.25933 0.95656 1.03148 0.95085 0.85587 0.78316 0.78535 0.79143 1.19118 1.21144 1.19315 1.21630 0.93446 0.92060 1.49689 0.92006 1.18978 0.93901 0.92728 0.94552 1.21145 0.97129 0.94353 0.96909 1.21686 0.97617 0.93286 1.02108 1.21997 0.95931 0.99566 0.87205 1.58502 1.23904 1.01362 1.34776 1.19699 0.85220 0.91701 0.87160 1.68507 1.26811 1.06269 1.28798 1.25312 0.84759 0.92245 0.93024 1.67397 1.27001 1.30980 1.02027 1.19177 0.94829 0.92867 0.90148 1.42881 1.38652 1.22974 1.13829 0.70802 1.26711 0.91729 0.81521 1.00075 1.70351 1.18219 1.30806 1.02961 1.19934 1.05626 0.98109 0.97827 1.22255 0.94311 0.85849 1.02395 1.21434 0.97683 0.96001 0.97707 0.92977 0.99222 0.99217 0.92740 0.92451 0.90634 0.89108 0.92898 0.74499 0.70407 0.94033 0.88288 0.92743 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -30.03 8.45 25.60 0.22 -29.82 16 8 H 0.06 3.34 7.08 -2.91 -0.02 3.32 16 9 C 0.04 1.89 4.45 29.85 0.13 2.02 16 10 C -0.08 -3.21 2.20 -10.71 -0.02 -3.23 16 11 C -0.11 -3.91 5.38 30.65 0.16 -3.75 16 12 C 0.08 2.49 4.67 86.33 0.40 2.89 16 13 N -0.47 -15.46 4.68 -700.72 -3.28 -18.74 16 14 C 0.41 12.60 6.43 133.46 0.86 13.46 16 15 N -0.58 -15.90 8.85 -196.98 -1.74 -17.65 16 16 C 0.34 7.41 12.25 180.86 2.22 9.63 16 17 N -0.55 -12.73 10.47 -197.89 -2.07 -14.80 16 18 C 0.27 6.34 8.51 133.86 1.14 7.48 16 19 N -0.57 -7.43 6.20 -195.83 -1.21 -8.65 16 20 H 0.45 2.31 8.96 -92.71 -0.83 1.48 16 21 C 0.29 3.73 12.98 179.96 2.34 6.07 16 22 N -0.50 -12.49 9.83 -191.39 -1.88 -14.37 16 23 C -0.09 -2.53 6.55 39.69 0.26 -2.27 16 24 C 0.08 2.56 5.26 86.32 0.45 3.01 16 25 C -0.09 -3.51 5.15 30.65 0.16 -3.35 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.09 2.70 7.73 -2.38 -0.02 2.68 16 33 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 34 H 0.24 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.28 0.14 8.06 -2.91 -0.02 0.11 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 3.23 6.14 -2.39 -0.01 3.22 16 38 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.85 7.05 -2.39 -0.02 2.84 16 Total: -1.00 -76.36 318.42 1.14 -75.22 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.25 Total: 7.25 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 8.78 Total: 2.55 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -9.90 Total: -131.62 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -76.36 1.14 -75.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578526936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.531 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds