Wall clock time and date at job start Fri Apr 10 2020 15:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99780 * 2 1 4 4 H 1.48500 * 109.46956 * 269.99261 * 3 2 1 5 5 H 1.48504 * 109.47174 * 29.99250 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99385 * 3 2 1 7 7 C 1.37879 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99995 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.52593 * 60.08081 * 9 7 2 11 11 C 1.53046 * 109.49417 * 299.99919 * 9 7 2 12 12 C 1.53046 * 109.53579 * 178.68258 * 11 9 7 13 13 C 1.53193 * 109.31028 * 61.36644 * 12 11 9 14 14 N 1.46927 * 108.77663 * 305.36644 * 13 12 11 15 15 C 1.34774 * 120.62692 * 233.59122 * 14 13 12 16 16 O 1.21281 * 120.00056 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00254 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.53780 * 113.61550 * 274.13728 * 18 17 15 20 20 C 1.53952 * 87.02327 * 220.04942 * 19 18 17 21 21 F 1.39901 * 113.53776 * 270.81519 * 20 19 18 22 22 F 1.39899 * 113.74605 * 139.94317 * 20 19 18 23 23 C 1.53780 * 113.61342 * 176.53306 * 18 17 15 24 24 C 1.46919 * 118.74179 * 53.60344 * 14 13 12 25 25 H 0.96994 * 120.00125 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.45866 * 298.70432 * 11 9 7 27 27 H 1.09000 * 109.45949 * 58.66768 * 11 9 7 28 28 H 1.09001 * 109.49347 * 181.31682 * 12 11 9 29 29 H 1.08998 * 109.49687 * 301.41384 * 12 11 9 30 30 H 1.09000 * 109.58615 * 185.57833 * 13 12 11 31 31 H 1.08997 * 109.70596 * 65.21979 * 13 12 11 32 32 H 1.08998 * 109.47497 * 300.00767 * 17 15 14 33 33 H 1.09000 * 109.46870 * 60.00930 * 17 15 14 34 34 H 1.08996 * 112.85289 * 45.33444 * 18 17 15 35 35 H 1.08997 * 113.61443 * 334.57137 * 19 18 17 36 36 H 1.08999 * 113.61610 * 105.46818 * 19 18 17 37 37 H 1.09003 * 113.61651 * 254.52864 * 23 18 17 38 38 H 1.09001 * 113.61882 * 25.34734 * 23 18 17 39 39 H 1.09002 * 109.59216 * 186.60571 * 24 14 13 40 40 H 1.09006 * 109.58250 * 66.18466 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8756 -0.6814 0.8916 11 6 4.0228 -0.4729 -1.2483 12 6 5.5529 -0.4435 -1.2322 13 6 6.0874 -1.8791 -1.2498 14 7 5.4863 -2.6212 -0.1332 15 6 6.2625 -3.2743 0.7541 16 8 5.7542 -3.8838 1.6712 17 6 7.7620 -3.2475 0.6066 18 6 8.4000 -4.0610 1.7345 19 6 8.6226 -3.2555 3.0253 20 6 9.9710 -3.9871 3.1542 21 9 9.8883 -5.1904 3.8631 22 9 11.0165 -3.1682 3.5941 23 6 9.9304 -4.1675 1.6275 24 6 4.0230 -2.6380 -0.0025 25 1 -0.4850 0.8400 -0.0004 26 1 3.6790 -1.0003 -2.1381 27 1 3.6402 0.5476 -1.2607 28 1 5.9157 0.0906 -2.1104 29 1 5.8976 0.0621 -0.3302 30 1 7.1716 -1.8667 -1.1386 31 1 5.8221 -2.3585 -2.1920 32 1 8.0404 -3.6791 -0.3547 33 1 8.1137 -2.2170 0.6577 34 1 7.9060 -5.0188 1.8973 35 1 8.7220 -2.1829 2.8590 36 1 7.9156 -3.4980 3.8187 37 1 10.2779 -5.1454 1.2941 38 1 10.3880 -3.3455 1.0770 39 1 3.7451 -3.1263 0.9316 40 1 3.5872 -3.1779 -0.8432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597896846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:07 Heat of formation + Delta-G solvation = -142.176503 kcal Electronic energy + Delta-G solvation = -23327.864528 eV Core-core repulsion = 19584.769854 eV Total energy + Delta-G solvation = -3743.094675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.79526 -48.14805 -41.24519 -39.21656 -38.10786 -35.34671 -33.55947 -32.35555 -30.93668 -27.18152 -27.07980 -26.36878 -24.13511 -23.15824 -21.66695 -20.80251 -19.86161 -18.84690 -18.37858 -18.09226 -17.50580 -17.20728 -16.90964 -16.60031 -16.27360 -15.50030 -15.37883 -15.02691 -14.90851 -14.88435 -14.46607 -14.35575 -14.16455 -13.92983 -13.85382 -13.46486 -13.23543 -12.99537 -12.86138 -12.53027 -12.19488 -12.10768 -12.02331 -11.83317 -11.80478 -11.48638 -11.34742 -11.24295 -11.06688 -10.68844 -10.60367 -9.49082 -8.32587 -6.37989 1.27462 1.35318 1.45578 1.73932 2.13117 2.30515 2.55637 2.87612 3.02586 3.27577 3.40595 3.41915 3.78412 4.02255 4.10477 4.20126 4.27059 4.35232 4.42843 4.52693 4.55965 4.59011 4.67749 4.71717 4.78298 4.81794 4.86698 4.91764 4.94854 5.00786 5.15086 5.17869 5.33908 5.41284 5.46643 5.66977 5.76786 6.25224 6.61364 6.69044 7.26805 7.30603 8.84354 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.003637 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.568719 B = 7697.510547 C = 7739.157929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.303 1.303 6 H -0.250 1.250 7 C -0.525 4.525 8 H 0.030 0.970 9 C 0.009 3.991 10 H 0.013 0.987 11 C -0.123 4.123 12 C -0.134 4.134 13 C 0.106 3.894 14 N -0.612 5.612 15 C 0.500 3.500 16 O -0.596 6.596 17 C -0.116 4.116 18 C -0.089 4.089 19 C -0.165 4.165 20 C 0.237 3.763 21 F -0.197 7.197 22 F -0.201 7.201 23 C -0.135 4.135 24 C 0.138 3.862 25 H 0.266 0.734 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.051 0.949 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.541 -3.325 -3.696 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.231 1.231 6 H -0.175 1.175 7 C -0.563 4.563 8 H 0.049 0.951 9 C -0.011 4.011 10 H 0.031 0.969 11 C -0.161 4.161 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.344 5.344 15 C 0.290 3.710 16 O -0.477 6.477 17 C -0.155 4.155 18 C -0.108 4.108 19 C -0.203 4.203 20 C 0.201 3.799 21 F -0.178 7.178 22 F -0.182 7.182 23 C -0.172 4.172 24 C 0.015 3.985 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.163 0.837 39 H 0.070 0.930 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.165 -3.568 -3.204 25.618 hybrid contribution -1.032 0.523 0.764 1.387 sum 24.133 -3.045 -2.440 24.446 Atomic orbital electron populations 1.70057 1.08359 1.28153 1.52462 1.25916 0.95449 1.03232 0.93964 0.85718 0.78783 0.78120 0.78980 1.18186 1.23126 1.17452 1.21274 0.91380 0.93081 1.50579 0.95142 1.19339 0.93473 0.93505 0.94780 0.96887 1.21870 0.96298 0.98964 0.98936 1.22004 0.94277 0.97566 1.03395 1.22068 0.99848 0.90681 0.88886 1.48421 1.06370 1.50903 1.28721 1.21580 0.91318 0.77589 0.80507 1.90677 1.76902 1.45635 1.34508 1.21725 0.87831 1.04193 1.01739 1.22065 0.95206 0.99612 0.93935 1.24302 0.93419 1.02496 1.00088 1.22572 0.86964 0.77604 0.92807 1.92982 1.96508 1.46956 1.81403 1.92983 1.61130 1.72225 1.91837 1.24140 0.95500 1.07612 0.89958 1.21242 0.79424 0.97293 1.00566 0.92484 0.91968 0.94699 0.87833 0.92197 0.85326 0.89842 0.84451 0.85359 0.89291 0.85466 0.91015 0.87359 0.83674 0.93022 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.01 0.66 5.45 84.65 0.46 1.13 16 3 Si 0.96 44.39 24.39 68.60 1.67 46.07 16 4 H -0.26 -10.90 6.86 99.48 0.68 -10.22 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.25 -10.83 6.53 99.48 0.65 -10.18 16 7 C -0.52 -30.05 9.15 25.60 0.23 -29.82 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C 0.01 0.39 1.84 -11.46 -0.02 0.37 16 10 H 0.01 0.63 7.21 -2.38 -0.02 0.61 16 11 C -0.12 -4.54 4.66 30.63 0.14 -4.40 16 12 C -0.13 -3.25 6.08 30.67 0.19 -3.06 16 13 C 0.11 2.05 6.34 86.36 0.55 2.60 16 14 N -0.61 -18.03 2.97 -818.93 -2.43 -20.47 16 15 C 0.50 14.10 7.70 87.66 0.67 14.77 16 16 O -0.60 -23.10 15.20 -3.03 -0.05 -23.15 16 17 C -0.12 -1.65 3.87 29.85 0.12 -1.53 16 18 C -0.09 -1.48 3.09 -10.27 -0.03 -1.51 16 19 C -0.17 -3.12 7.44 31.18 0.23 -2.88 16 20 C 0.24 4.37 3.28 31.18 0.10 4.47 16 21 F -0.20 -4.66 17.38 44.97 0.78 -3.88 16 22 F -0.20 -4.09 17.41 44.97 0.78 -3.30 16 23 C -0.13 -1.44 7.43 31.12 0.23 -1.21 16 24 C 0.14 5.60 5.65 86.36 0.49 6.09 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.03 1.39 3.25 -2.39 -0.01 1.38 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.13 1.20 5.93 -2.39 -0.01 1.18 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.14 0.99 7.94 -2.39 -0.02 0.98 16 33 H 0.13 1.11 7.43 -2.39 -0.02 1.10 16 34 H 0.09 1.95 7.73 -2.39 -0.02 1.93 16 35 H 0.13 1.91 7.92 -2.39 -0.02 1.89 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.15 0.67 8.10 -2.39 -0.02 0.65 16 39 H 0.05 2.41 7.01 -2.39 -0.02 2.39 16 40 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -77.73 319.58 5.38 -72.35 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.96 Total: 6.83 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.36 Total: -14.99 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.13 Total: -79.92 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 1.56 Total: -7.18 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.67 Total: 46.07 kcal Total: -77.73 5.38 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597896846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.827 kcal (2) G-P(sol) polarization free energy of solvation -77.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds