Wall clock time and date at job start Fri Apr 10 2020 15:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00269 * 2 1 4 4 H 1.48507 * 109.47183 * 270.00409 * 3 2 1 5 5 H 1.48505 * 109.47006 * 30.00224 * 3 2 1 6 6 H 1.48496 * 109.47488 * 150.00040 * 3 2 1 7 7 C 1.38814 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00344 * 197.34888 * 7 2 1 9 9 N 1.36946 * 119.99688 * 17.35270 * 7 2 1 10 10 C 1.46926 * 120.62764 * 207.67500 * 9 7 2 11 11 C 1.53186 * 108.77622 * 233.62774 * 10 9 7 12 12 C 1.53044 * 109.31484 * 305.36971 * 11 10 9 13 13 N 1.46494 * 109.46265 * 181.38389 * 12 11 10 14 14 C 1.38591 * 120.00067 * 154.99603 * 13 12 11 15 15 N 1.31766 * 120.22751 * 359.97438 * 14 13 12 16 16 C 1.33723 * 121.26391 * 180.02562 * 15 14 13 17 17 C 1.34743 * 121.34835 * 0.02562 * 16 15 14 18 18 N 1.37082 * 119.91728 * 359.96101 * 17 16 15 19 19 C 1.36048 * 133.66557 * 180.35305 * 18 17 16 20 20 C 1.35450 * 107.12602 * 180.09136 * 19 18 17 21 21 N 1.33351 * 108.55495 * 359.61596 * 20 19 18 22 22 C 1.32163 * 109.13251 * 0.24088 * 21 20 19 23 23 C 1.53037 * 109.53753 * 61.36183 * 12 11 10 24 24 C 1.46928 * 120.62915 * 27.69567 * 9 7 2 25 25 H 0.96998 * 120.00357 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.58473 * 113.84221 * 10 9 7 27 27 H 1.08997 * 109.70426 * 353.48980 * 10 9 7 28 28 H 1.09003 * 109.50135 * 185.41749 * 11 10 9 29 29 H 1.09005 * 109.52398 * 65.33364 * 11 10 9 30 30 H 1.09002 * 109.45361 * 301.35862 * 12 11 10 31 31 H 0.96999 * 120.00237 * 335.00006 * 13 12 11 32 32 H 1.07992 * 119.32537 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.04209 * 179.97438 * 17 16 15 34 34 H 1.07995 * 126.43389 * 359.97438 * 19 18 17 35 35 H 1.08007 * 125.71834 * 179.87644 * 20 19 18 36 36 H 1.08998 * 109.49842 * 58.58641 * 23 12 11 37 37 H 1.09003 * 109.49499 * 178.68886 * 23 12 11 38 38 H 1.09000 * 109.58389 * 246.15778 * 24 9 7 39 39 H 1.08992 * 109.58508 * 6.58696 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2783 9 7 1.3722 -2.3610 -0.3548 10 6 1.8194 -3.6548 0.1787 11 6 2.0750 -4.6091 -0.9920 12 6 0.8196 -4.6886 -1.8636 13 7 1.0491 -5.6259 -2.9659 14 6 -0.0239 -6.2634 -3.5683 15 7 -1.2524 -6.0302 -3.1529 16 6 -2.3028 -6.6341 -3.7188 17 6 -2.1469 -7.5049 -4.7352 18 7 -0.8914 -7.7855 -5.2086 19 6 -0.4189 -8.5912 -6.1979 20 6 0.9295 -8.4637 -6.2062 21 7 1.2797 -7.5973 -5.2548 22 6 0.1927 -7.1716 -4.6352 23 6 0.5014 -3.3031 -2.4304 24 6 0.2279 -2.3340 -1.2759 25 1 -0.4850 0.8400 0.0004 26 1 1.0470 -4.0697 0.8264 27 1 2.7393 -3.5197 0.7475 28 1 2.3144 -5.6007 -0.6076 29 1 2.9090 -4.2390 -1.5883 30 1 -0.0196 -5.0356 -1.2607 31 1 1.9522 -5.8004 -3.2740 32 1 -3.2962 -6.4195 -3.3538 33 1 -3.0101 -7.9810 -5.1764 34 1 -1.0082 -9.2164 -6.8522 35 1 1.6071 -8.9745 -6.8744 36 1 1.3501 -2.9447 -3.0129 37 1 -0.3793 -3.3651 -3.0697 38 1 -0.6743 -2.6411 -0.7469 39 1 0.0985 -1.3254 -1.6683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892403291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:24 Heat of formation + Delta-G solvation = 111.683318 kcal Electronic energy + Delta-G solvation = -22428.965405 eV Core-core repulsion = 19179.860856 eV Total energy + Delta-G solvation = -3249.104549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.90727 -40.13209 -38.97079 -36.93949 -34.87828 -33.62857 -31.96803 -31.52007 -30.48400 -29.82639 -26.90900 -24.85030 -24.42270 -23.80439 -23.21676 -22.34571 -21.05627 -19.69921 -18.73972 -18.55400 -17.21685 -17.14105 -16.83484 -16.38322 -15.99106 -15.54490 -15.33276 -15.14210 -14.84833 -14.72953 -14.63097 -14.17065 -13.87664 -13.84389 -13.16834 -13.00373 -12.87912 -12.60924 -12.53234 -12.09772 -12.01438 -11.84011 -11.54172 -11.32479 -11.28030 -10.70922 -10.64717 -10.48552 -9.62369 -8.70829 -8.46765 -7.86472 -5.31824 -0.08361 0.32023 1.47508 1.49345 1.50938 1.58108 1.94370 2.13319 2.52247 2.68321 3.02286 3.28942 3.45790 3.64684 3.72829 3.89116 4.02448 4.09978 4.35850 4.39459 4.47420 4.49378 4.55038 4.68031 4.78230 4.83569 4.96117 5.05962 5.08444 5.15469 5.31840 5.34861 5.48411 5.58810 5.65431 5.72370 5.91525 5.99278 6.28754 6.39923 6.78756 7.14788 7.15511 7.85875 8.37921 9.20285 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.031925 B = 0.003587 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.833350 B = 7803.197602 C = 8069.221411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.264 4.264 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.146 3.854 11 C -0.127 4.127 12 C 0.177 3.823 13 N -0.681 5.681 14 C 0.470 3.530 15 N -0.579 5.579 16 C 0.090 3.910 17 C -0.080 4.080 18 N -0.334 5.334 19 C -0.060 4.060 20 C 0.002 3.998 21 N -0.492 5.492 22 C 0.102 3.898 23 C -0.127 4.127 24 C 0.186 3.814 25 H 0.250 0.750 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.417 0.583 32 H 0.201 0.799 33 H 0.207 0.793 34 H 0.229 0.771 35 H 0.214 0.786 36 H 0.047 0.953 37 H 0.051 0.949 38 H -0.002 1.002 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 -19.345 -12.467 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.334 5.334 10 C 0.020 3.980 11 C -0.166 4.166 12 C 0.072 3.928 13 N -0.312 5.312 14 C 0.212 3.788 15 N -0.306 5.306 16 C -0.049 4.049 17 C -0.204 4.204 18 N -0.006 5.006 19 C -0.197 4.197 20 C -0.153 4.153 21 N -0.215 5.215 22 C -0.146 4.146 23 C -0.167 4.167 24 C 0.059 3.941 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.255 0.745 32 H 0.217 0.783 33 H 0.224 0.776 34 H 0.246 0.754 35 H 0.230 0.770 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.650 -18.307 -11.423 21.741 hybrid contribution -0.231 0.357 -0.842 0.944 sum -2.881 -17.950 -12.265 21.930 Atomic orbital electron populations 1.70188 1.06706 1.25827 1.55336 1.25801 0.96020 1.01542 1.01267 0.85275 0.78212 0.79573 0.77444 1.21447 1.22199 1.19097 1.19560 0.93117 0.86029 1.40669 0.91189 1.44358 1.35814 1.02404 1.50813 1.20982 0.97958 0.85436 0.93646 1.22185 0.96463 1.00383 0.97609 1.20727 0.98628 0.87184 0.86239 1.44771 1.06320 1.44232 1.35899 1.17909 0.88776 0.86450 0.85693 1.67985 0.97136 1.31609 1.33880 1.22376 0.98403 0.91889 0.92231 1.22679 0.86556 1.07661 1.03540 1.42757 1.07295 1.27746 1.22806 1.23502 0.96587 1.02691 0.96944 1.23267 0.94256 0.98935 0.98796 1.70353 1.26452 1.14522 1.10171 1.21177 0.84902 1.05432 1.03133 1.22297 1.00047 0.95778 0.98594 1.20466 0.87923 0.97186 0.88505 0.94137 0.96383 0.91661 0.89503 0.91501 0.90645 0.74487 0.78264 0.77612 0.75449 0.76964 0.93415 0.92981 0.98342 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 11.19 21.65 0.24 -55.94 16 2 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 3 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.26 -14.62 9.59 84.03 0.81 -13.81 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 9 N -0.61 -31.04 2.99 -699.10 -2.09 -33.13 16 10 C 0.15 5.97 6.51 86.36 0.56 6.54 16 11 C -0.13 -4.19 5.55 30.67 0.17 -4.02 16 12 C 0.18 6.16 2.44 45.02 0.11 6.27 16 13 N -0.68 -21.15 5.21 -322.90 -1.68 -22.84 16 14 C 0.47 14.73 7.54 134.05 1.01 15.74 16 15 N -0.58 -17.90 9.31 -193.13 -1.80 -19.70 16 16 C 0.09 2.01 11.06 83.60 0.92 2.94 16 17 C -0.08 -1.45 11.03 83.07 0.92 -0.54 16 18 N -0.33 -7.45 2.96 -351.66 -1.04 -8.49 16 19 C -0.06 -0.97 11.80 83.39 0.98 0.01 16 20 C 0.00 0.05 11.84 83.82 0.99 1.04 16 21 N -0.49 -13.66 11.30 -193.71 -2.19 -15.85 16 22 C 0.10 2.94 7.71 134.41 1.04 3.97 16 23 C -0.13 -5.18 5.66 30.67 0.17 -5.01 16 24 C 0.19 9.32 5.31 86.36 0.46 9.78 16 25 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 2.56 7.94 -2.39 -0.02 2.54 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.08 2.86 7.56 -2.39 -0.02 2.84 16 31 H 0.42 11.97 8.62 -92.71 -0.80 11.18 16 32 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.21 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.05 3.06 6.03 -2.39 -0.01 3.04 16 Total: -1.00 -72.57 322.24 2.30 -70.28 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.27 Total: 17.82 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 8.56 Total: 20.45 kcal Atomic # 7 Polarization: -147.39 SS G_CDS: -8.56 Total: -155.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.57 2.30 -70.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.960 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds