Wall clock time and date at job start Fri Apr 10 2020 15:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48500 * 109.46987 * 240.00126 * 3 2 1 5 5 H 1.48500 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47312 * 119.99985 * 3 2 1 7 7 C 1.38807 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00237 * 163.06713 * 7 2 1 9 9 N 1.36937 * 120.00000 * 343.07744 * 7 2 1 10 10 C 1.46929 * 120.62973 * 331.83359 * 9 7 2 11 11 C 1.53196 * 108.77571 * 233.63526 * 10 9 7 12 12 C 1.53047 * 109.30760 * 305.36033 * 11 10 9 13 13 N 1.46497 * 109.45645 * 181.38579 * 12 11 10 14 14 C 1.39048 * 119.99928 * 155.00239 * 13 12 11 15 15 N 1.32375 * 119.97345 * 0.02562 * 14 13 12 16 16 C 1.32387 * 122.20091 * 179.97438 * 15 14 13 17 17 C 1.36424 * 121.56280 * 359.97438 * 16 15 14 18 18 C 1.40249 * 118.99628 * 359.97438 * 17 16 15 19 19 N 1.35249 * 134.73946 * 180.02562 * 18 17 16 20 20 C 1.30319 * 109.63324 * 179.97438 * 19 18 17 21 21 N 1.35861 * 110.07245 * 0.24336 * 20 19 18 22 22 H 0.96993 * 126.35383 * 179.73043 * 21 20 19 23 23 C 1.37982 * 107.28094 * 359.61238 * 21 20 19 24 24 C 1.53043 * 109.53627 * 61.36864 * 12 11 10 25 25 C 1.46931 * 120.63164 * 151.85534 * 9 7 2 26 26 H 0.96997 * 119.99863 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.58700 * 113.84673 * 10 9 7 28 28 H 1.09003 * 109.70173 * 353.48687 * 10 9 7 29 29 H 1.08999 * 109.49628 * 185.41347 * 11 10 9 30 30 H 1.08993 * 109.50095 * 65.31177 * 11 10 9 31 31 H 1.08997 * 109.46318 * 301.36128 * 12 11 10 32 32 H 0.97000 * 120.00474 * 334.99999 * 13 12 11 33 33 H 1.07998 * 119.21531 * 180.02562 * 16 15 14 34 34 H 1.08000 * 120.49832 * 180.02562 * 17 16 15 35 35 H 1.07999 * 124.97005 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.49852 * 58.58626 * 24 12 11 37 37 H 1.09003 * 109.49191 * 178.67928 * 24 12 11 38 38 H 1.08998 * 109.58376 * 246.15145 * 25 9 7 39 39 H 1.08993 * 109.58421 * 6.44030 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2681 11 6 0.4982 -3.3182 2.4152 12 6 0.8132 -4.7001 1.8378 13 7 1.0414 -5.6461 2.9329 14 6 0.8321 -7.0059 2.7318 15 7 0.4272 -7.4452 1.5505 16 6 0.2149 -8.7297 1.3104 17 6 0.4036 -9.6770 2.2738 18 6 0.8334 -9.2755 3.5470 19 7 1.1144 -9.9182 4.7034 20 6 1.4827 -9.0538 5.6064 21 7 1.4565 -7.7982 5.0881 22 1 1.6825 -6.9786 5.5550 23 6 1.0514 -7.9058 3.7735 24 6 2.0685 -4.6166 0.9663 25 6 1.8143 -3.6530 -0.1972 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6768 -2.6411 0.7373 28 1 0.0965 -1.3344 1.6685 29 1 -0.3823 -3.3831 3.0545 30 1 1.3478 -2.9659 3.0000 31 1 -0.0268 -5.0409 1.2326 32 1 1.3385 -5.3239 3.7982 33 1 -0.1148 -9.0349 0.3283 34 1 0.2256 -10.7203 2.0589 35 1 1.7632 -9.2990 6.6201 36 1 2.9034 -4.2521 1.5648 37 1 2.3056 -5.6057 0.5743 38 1 1.0407 -4.0613 -0.8475 39 1 2.7335 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892403988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:40 Heat of formation + Delta-G solvation = 109.498351 kcal Electronic energy + Delta-G solvation = -22358.434986 eV Core-core repulsion = 19109.235690 eV Total energy + Delta-G solvation = -3249.199297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35723 -38.93272 -37.62015 -35.23761 -33.17602 -32.04698 -30.51338 -30.40045 -29.67048 -28.34354 -24.99606 -23.47660 -23.18442 -22.19308 -21.91791 -20.84610 -19.52422 -18.63536 -17.63138 -16.84364 -16.21242 -15.65352 -15.58671 -14.98811 -14.78368 -14.30802 -13.90915 -13.68129 -13.60516 -13.43845 -12.94467 -12.59754 -12.46083 -12.21293 -11.47096 -11.25771 -11.10389 -10.82812 -10.72900 -10.50302 -10.42964 -10.27677 -10.07747 -9.85310 -9.57499 -9.40528 -9.29578 -8.96567 -8.48687 -7.36007 -6.69161 -5.80862 -3.22948 1.00773 1.44841 2.66593 2.75346 3.26405 3.37141 3.42619 3.43627 4.02509 4.06805 4.48222 4.51249 4.69587 4.97969 5.13507 5.32967 5.38335 5.50870 5.55808 5.58901 5.63020 5.89520 6.00127 6.07518 6.24480 6.30216 6.44288 6.50582 6.56186 6.60031 6.74398 6.81357 7.00032 7.04441 7.25395 7.34755 7.41408 7.60825 7.66885 7.77893 8.36659 8.43554 9.19694 9.83038 10.40147 11.28050 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.003463 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.201749 B = 8083.683618 C = 8432.025119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.148 4.148 12 C 0.164 3.836 13 N -0.717 5.717 14 C 0.451 3.549 15 N -0.533 5.533 16 C 0.132 3.868 17 C -0.198 4.198 18 C 0.121 3.879 19 N -0.504 5.504 20 C 0.267 3.733 21 N -0.583 5.583 22 H 0.422 0.578 23 C -0.072 4.072 24 C -0.137 4.137 25 C 0.148 3.852 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.396 0.604 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.217 0.783 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -15.558 10.879 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.050 3.950 11 C -0.188 4.188 12 C 0.060 3.940 13 N -0.347 5.347 14 C 0.204 3.796 15 N -0.254 5.254 16 C -0.018 4.018 17 C -0.224 4.224 18 C -0.006 4.006 19 N -0.225 5.225 20 C -0.021 4.021 21 N -0.194 5.194 22 H 0.261 0.739 23 C -0.187 4.187 24 C -0.177 4.177 25 C 0.021 3.979 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.230 0.770 33 H 0.176 0.824 34 H 0.150 0.850 35 H 0.234 0.766 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.368 -15.629 10.027 18.620 hybrid contribution 0.918 1.587 1.334 2.267 sum 2.286 -14.042 11.361 18.206 Atomic orbital electron populations 1.70013 1.05235 1.25632 1.53873 1.25045 0.95284 0.98396 1.00875 0.86372 0.78913 0.83372 0.78121 1.20855 1.21623 1.21111 1.19152 0.92570 0.84836 1.41747 0.91735 1.44079 1.35799 1.01681 1.49984 1.20712 0.88946 0.97777 0.87610 1.22561 1.00238 0.95140 1.00890 1.21000 0.98455 0.87531 0.87000 1.45094 1.72278 1.02182 1.15163 1.17550 0.90586 0.84545 0.86891 1.67432 1.21600 1.17955 1.18423 1.21816 0.94665 0.86482 0.98797 1.20605 1.09638 1.01306 0.90823 1.19017 0.99490 0.88201 0.93896 1.70385 1.20589 1.31876 0.99650 1.25439 0.97817 0.78921 0.99969 1.43015 1.56328 1.10416 1.09668 0.73914 1.19464 1.14252 0.97956 0.86989 1.22370 0.97129 0.99463 0.98760 1.20873 0.97830 0.86467 0.92699 0.93554 0.96059 0.89167 0.92972 0.92528 0.89569 0.76977 0.82433 0.84977 0.76641 0.92907 0.92588 0.96056 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 8 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16 10 C 0.18 4.09 5.30 -3.71 -0.02 4.07 16 11 C -0.15 -2.68 5.55 -26.61 -0.15 -2.83 16 12 C 0.16 2.76 2.44 -67.89 -0.17 2.60 16 13 N -0.72 -9.97 5.22 -53.81 -0.28 -10.25 16 14 C 0.45 6.55 7.48 -154.90 -1.16 5.40 16 15 N -0.53 -8.24 9.21 -12.67 -0.12 -8.35 16 16 C 0.13 1.72 11.09 -17.97 -0.20 1.52 16 17 C -0.20 -2.54 10.11 -39.48 -0.40 -2.94 16 18 C 0.12 1.67 7.30 -84.74 -0.62 1.05 16 19 N -0.50 -6.37 11.26 -12.03 -0.14 -6.51 16 20 C 0.27 2.27 12.97 -89.77 -1.16 1.10 16 21 N -0.58 -5.14 6.22 -11.63 -0.07 -5.21 16 22 H 0.42 2.32 8.96 -40.82 -0.37 1.96 16 23 C -0.07 -0.93 7.20 -83.80 -0.60 -1.54 16 24 C -0.14 -2.46 5.67 -26.61 -0.15 -2.61 16 25 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.62 7.55 -51.93 -0.39 1.23 16 32 H 0.40 4.54 8.61 -40.82 -0.35 4.19 16 33 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.22 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -33.05 321.46 -10.76 -43.81 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.19 Total: 3.83 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -4.88 Total: 1.90 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.50 Total: -70.78 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.05 -10.76 -43.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.307 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds