Wall clock time and date at job start Fri Apr 10 2020 15:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48500 * 109.46987 * 240.00126 * 3 2 1 5 5 H 1.48500 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47312 * 119.99985 * 3 2 1 7 7 C 1.38807 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00237 * 163.06713 * 7 2 1 9 9 N 1.36937 * 120.00000 * 343.07744 * 7 2 1 10 10 C 1.46929 * 120.62973 * 331.83359 * 9 7 2 11 11 C 1.53196 * 108.77571 * 233.63526 * 10 9 7 12 12 C 1.53047 * 109.30760 * 305.36033 * 11 10 9 13 13 N 1.46497 * 109.45645 * 181.38579 * 12 11 10 14 14 C 1.39048 * 119.99928 * 155.00239 * 13 12 11 15 15 N 1.32375 * 119.97345 * 0.02562 * 14 13 12 16 16 C 1.32387 * 122.20091 * 179.97438 * 15 14 13 17 17 C 1.36424 * 121.56280 * 359.97438 * 16 15 14 18 18 C 1.40249 * 118.99628 * 359.97438 * 17 16 15 19 19 N 1.35249 * 134.73946 * 180.02562 * 18 17 16 20 20 C 1.30319 * 109.63324 * 179.97438 * 19 18 17 21 21 N 1.35861 * 110.07245 * 0.24336 * 20 19 18 22 22 H 0.96993 * 126.35383 * 179.73043 * 21 20 19 23 23 C 1.37982 * 107.28094 * 359.61238 * 21 20 19 24 24 C 1.53043 * 109.53627 * 61.36864 * 12 11 10 25 25 C 1.46931 * 120.63164 * 151.85534 * 9 7 2 26 26 H 0.96997 * 119.99863 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.58700 * 113.84673 * 10 9 7 28 28 H 1.09003 * 109.70173 * 353.48687 * 10 9 7 29 29 H 1.08999 * 109.49628 * 185.41347 * 11 10 9 30 30 H 1.08993 * 109.50095 * 65.31177 * 11 10 9 31 31 H 1.08997 * 109.46318 * 301.36128 * 12 11 10 32 32 H 0.97000 * 120.00474 * 334.99999 * 13 12 11 33 33 H 1.07998 * 119.21531 * 180.02562 * 16 15 14 34 34 H 1.08000 * 120.49832 * 180.02562 * 17 16 15 35 35 H 1.07999 * 124.97005 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.49852 * 58.58626 * 24 12 11 37 37 H 1.09003 * 109.49191 * 178.67928 * 24 12 11 38 38 H 1.08998 * 109.58376 * 246.15145 * 25 9 7 39 39 H 1.08993 * 109.58421 * 6.44030 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2681 11 6 0.4982 -3.3182 2.4152 12 6 0.8132 -4.7001 1.8378 13 7 1.0414 -5.6461 2.9329 14 6 0.8321 -7.0059 2.7318 15 7 0.4272 -7.4452 1.5505 16 6 0.2149 -8.7297 1.3104 17 6 0.4036 -9.6770 2.2738 18 6 0.8334 -9.2755 3.5470 19 7 1.1144 -9.9182 4.7034 20 6 1.4827 -9.0538 5.6064 21 7 1.4565 -7.7982 5.0881 22 1 1.6825 -6.9786 5.5550 23 6 1.0514 -7.9058 3.7735 24 6 2.0685 -4.6166 0.9663 25 6 1.8143 -3.6530 -0.1972 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6768 -2.6411 0.7373 28 1 0.0965 -1.3344 1.6685 29 1 -0.3823 -3.3831 3.0545 30 1 1.3478 -2.9659 3.0000 31 1 -0.0268 -5.0409 1.2326 32 1 1.3385 -5.3239 3.7982 33 1 -0.1148 -9.0349 0.3283 34 1 0.2256 -10.7203 2.0589 35 1 1.7632 -9.2990 6.6201 36 1 2.9034 -4.2521 1.5648 37 1 2.3056 -5.6057 0.5743 38 1 1.0407 -4.0613 -0.8475 39 1 2.7335 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892403988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:39 Heat of formation + Delta-G solvation = 88.328030 kcal Electronic energy + Delta-G solvation = -22359.353000 eV Core-core repulsion = 19109.235690 eV Total energy + Delta-G solvation = -3250.117311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.20997 -40.10127 -38.99423 -36.63510 -34.53354 -33.43065 -31.96405 -31.45807 -31.29024 -29.58359 -26.78646 -24.53604 -24.26909 -23.77114 -23.25954 -21.92477 -21.00978 -19.72144 -18.69534 -18.56953 -17.22419 -16.91864 -16.67407 -16.48958 -15.85213 -15.60692 -15.38935 -15.33141 -14.87457 -14.64614 -14.45762 -14.03213 -13.93825 -13.26690 -13.17106 -12.98283 -12.57356 -12.53051 -12.37361 -12.07192 -11.99484 -11.81345 -11.49837 -11.34496 -11.19551 -10.58532 -10.48188 -10.44222 -9.88237 -8.70015 -8.39825 -7.87880 -5.33341 0.11168 0.48322 1.48297 1.49588 1.57027 1.92710 1.94866 2.16293 2.51808 3.02945 3.27746 3.33869 3.63630 3.71114 3.79148 3.94862 4.07725 4.14219 4.39940 4.40665 4.47573 4.62780 4.67629 4.72197 4.84333 4.90294 5.05023 5.10874 5.16576 5.18204 5.31589 5.37533 5.47939 5.63959 5.67199 5.71881 6.14848 6.38784 6.40718 6.43971 6.84693 7.14734 7.36094 7.84842 8.37490 9.18928 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.003463 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.201749 B = 8083.683618 C = 8432.025119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.131 4.131 12 C 0.181 3.819 13 N -0.710 5.710 14 C 0.437 3.563 15 N -0.564 5.564 16 C 0.121 3.879 17 C -0.200 4.200 18 C 0.098 3.902 19 N -0.543 5.543 20 C 0.291 3.709 21 N -0.571 5.571 22 H 0.439 0.561 23 C -0.080 4.080 24 C -0.119 4.119 25 C 0.146 3.854 26 H 0.251 0.749 27 H -0.004 1.004 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.409 0.591 33 H 0.179 0.821 34 H 0.147 0.853 35 H 0.270 0.730 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.012 0.988 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -16.568 13.044 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.170 4.170 12 C 0.076 3.924 13 N -0.343 5.343 14 C 0.191 3.809 15 N -0.285 5.285 16 C -0.028 4.028 17 C -0.225 4.225 18 C -0.029 4.029 19 N -0.265 5.265 20 C 0.004 3.996 21 N -0.183 5.183 22 H 0.281 0.719 23 C -0.195 4.195 24 C -0.160 4.160 25 C 0.020 3.980 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.246 0.754 33 H 0.196 0.804 34 H 0.165 0.835 35 H 0.286 0.714 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.623 -16.666 12.228 20.837 hybrid contribution 0.531 1.768 0.691 1.971 sum 3.153 -14.899 12.919 19.970 Atomic orbital electron populations 1.70174 1.06650 1.26000 1.55195 1.25797 0.96031 1.01465 1.01060 0.85339 0.77564 0.79166 0.78343 1.20301 1.21994 1.20238 1.19484 0.92861 0.86005 1.41311 0.91655 1.44331 1.35932 1.02233 1.50781 1.20516 0.87789 0.97510 0.88675 1.22272 1.01397 0.94411 0.98947 1.20524 0.97078 0.87375 0.87461 1.44680 1.73062 1.01678 1.14871 1.17605 0.91276 0.84592 0.87404 1.67388 1.22447 1.19241 1.19461 1.22164 0.94844 0.85879 0.99929 1.20858 1.08840 1.02044 0.90782 1.19383 0.99874 0.88945 0.94716 1.70401 1.22784 1.33300 0.99997 1.26499 0.94291 0.77900 1.00958 1.43033 1.55511 1.11586 1.08217 0.71884 1.19355 1.14599 0.97255 0.88319 1.22144 0.97690 0.98555 0.97574 1.20962 0.97258 0.85837 0.93958 0.94016 0.98596 0.92151 0.90999 0.91800 0.91551 0.75385 0.80356 0.83523 0.71427 0.92715 0.91927 0.97029 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 11.19 21.65 0.24 -54.68 16 2 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 3 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.27 -14.65 9.58 84.03 0.81 -13.85 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 9 N -0.61 -30.68 2.99 -699.09 -2.09 -32.77 16 10 C 0.18 8.63 5.30 86.36 0.46 9.09 16 11 C -0.13 -4.63 5.55 30.68 0.17 -4.46 16 12 C 0.18 5.97 2.44 45.02 0.11 6.08 16 13 N -0.71 -18.60 5.22 -324.16 -1.69 -20.29 16 14 C 0.44 12.17 7.48 133.12 1.00 13.16 16 15 N -0.56 -17.16 9.21 -193.99 -1.79 -18.94 16 16 C 0.12 3.08 11.09 84.19 0.93 4.02 16 17 C -0.20 -4.95 10.11 22.34 0.23 -4.73 16 18 C 0.10 2.56 7.30 39.67 0.29 2.85 16 19 N -0.54 -12.43 11.26 -191.98 -2.16 -14.59 16 20 C 0.29 3.84 12.97 180.05 2.34 6.17 16 21 N -0.57 -8.20 6.22 -190.72 -1.19 -9.39 16 22 H 0.44 3.18 8.96 -92.71 -0.83 2.35 16 23 C -0.08 -1.92 7.20 39.01 0.28 -1.64 16 24 C -0.12 -4.20 5.67 30.67 0.17 -4.03 16 25 C 0.15 6.27 6.52 86.36 0.56 6.83 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.06 3.22 6.06 -2.39 -0.01 3.21 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.50 7.55 -2.39 -0.02 2.48 16 32 H 0.41 8.37 8.61 -92.71 -0.80 7.57 16 33 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.27 0.24 8.06 -2.91 -0.02 0.22 16 36 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 Total: -1.00 -73.32 321.46 0.57 -72.75 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.54 Total: 14.28 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.76 Total: 17.25 kcal Atomic # 7 Polarization: -141.99 SS G_CDS: -8.68 Total: -150.67 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.32 0.57 -72.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.076 kcal (2) G-P(sol) polarization free energy of solvation -73.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds