Wall clock time and date at job start Fri Apr 10 2020 15:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99750 * 2 1 4 4 H 1.48504 * 109.46902 * 270.00129 * 3 2 1 5 5 H 1.48495 * 109.47270 * 149.99828 * 3 2 1 6 6 H 1.48500 * 109.47240 * 29.99695 * 3 2 1 7 7 C 1.37871 * 120.00422 * 179.97438 * 2 1 3 8 8 C 1.51265 * 120.85368 * 174.56911 * 7 2 1 9 9 C 1.53659 * 108.31243 * 231.38391 * 8 7 2 10 10 C 1.52959 * 109.32409 * 305.13494 * 9 8 7 11 11 H 1.09000 * 109.41457 * 303.62256 * 10 9 8 12 12 N 1.46500 * 109.36069 * 183.80043 * 10 9 8 13 13 C 1.34779 * 120.00224 * 84.67865 * 12 10 9 14 14 O 1.21279 * 119.99744 * 0.02562 * 13 12 10 15 15 C 1.50698 * 119.99891 * 180.02562 * 13 12 10 16 16 H 1.08993 * 110.01732 * 58.61298 * 15 13 12 17 17 C 1.54260 * 110.03263 * 297.16931 * 15 13 12 18 18 C 1.54896 * 104.19628 * 217.10786 * 17 15 13 19 19 C 1.54894 * 102.74863 * 37.94179 * 18 17 15 20 20 F 1.39894 * 110.48728 * 203.38254 * 19 18 17 21 21 F 1.39901 * 110.59544 * 80.79018 * 19 18 17 22 22 C 1.53880 * 110.02808 * 180.02562 * 15 13 12 23 23 C 1.52955 * 109.81398 * 63.72784 * 10 9 8 24 24 C 1.51271 * 120.84793 * 354.28879 * 7 2 1 25 25 H 0.97002 * 120.00071 * 185.61176 * 1 2 3 26 26 H 1.09007 * 109.62679 * 351.04199 * 8 7 2 27 27 H 1.09003 * 109.62682 * 111.60889 * 8 7 2 28 28 H 1.09002 * 109.41498 * 185.24865 * 9 8 7 29 29 H 1.08996 * 109.64071 * 65.16125 * 9 8 7 30 30 H 0.97004 * 119.99738 * 264.68566 * 12 10 9 31 31 H 1.09008 * 110.48978 * 335.78199 * 17 15 13 32 32 H 1.08997 * 110.49038 * 98.43172 * 17 15 13 33 33 H 1.08999 * 110.75268 * 279.63108 * 18 17 15 34 34 H 1.08994 * 110.75790 * 156.25565 * 18 17 15 35 35 H 1.08995 * 110.03344 * 238.57076 * 22 15 13 36 36 H 1.09003 * 110.03165 * 359.95536 * 22 15 13 37 37 H 1.09008 * 109.48039 * 176.42213 * 23 10 9 38 38 H 1.08998 * 109.48721 * 56.38322 * 23 10 9 39 39 H 1.09003 * 109.62737 * 248.38831 * 24 7 2 40 40 H 1.08997 * 109.62522 * 8.76632 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 3.5466 1.4404 0.7000 6 1 1.4465 2.6527 0.7000 7 6 2.0046 -1.1939 0.0005 8 6 3.5120 -1.2193 -0.1224 9 6 3.8880 -2.1912 -1.2516 10 6 3.2557 -3.5564 -0.9760 11 1 3.5742 -3.9120 0.0038 12 7 3.6873 -4.5077 -2.0032 13 6 4.8594 -5.1593 -1.8685 14 8 5.5566 -4.9584 -0.8967 15 6 5.3035 -6.1374 -2.9253 16 1 5.3763 -5.6363 -3.8905 17 6 4.3059 -7.3109 -3.0119 18 6 5.1976 -8.5484 -3.2818 19 6 6.4466 -8.2663 -2.4102 20 9 7.5547 -8.9643 -2.9021 21 9 6.2042 -8.6118 -1.0764 22 6 6.6643 -6.7453 -2.5424 23 6 1.7311 -3.4365 -1.0025 24 6 1.2734 -2.5118 0.1304 25 1 -0.4850 -0.8360 0.0821 26 1 3.8768 -0.2202 -0.3609 27 1 3.9502 -1.5575 0.8167 28 1 4.9723 -2.2947 -1.2945 29 1 3.5216 -1.8063 -2.2033 30 1 3.1294 -4.6686 -2.7803 31 1 3.7691 -7.4256 -2.0702 32 1 3.6071 -7.1577 -3.8343 33 1 5.4676 -8.6073 -4.3362 34 1 4.6989 -9.4618 -2.9579 35 1 7.3977 -6.5398 -3.3221 36 1 7.0038 -6.3321 -1.5926 37 1 1.2865 -4.4228 -0.8688 38 1 1.4155 -3.0221 -1.9599 39 1 1.5081 -2.9675 1.0923 40 1 0.1990 -2.3431 0.0576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186889354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:19 Heat of formation + Delta-G solvation = -170.566766 kcal Electronic energy + Delta-G solvation = -23428.778965 eV Core-core repulsion = 19684.453196 eV Total energy + Delta-G solvation = -3744.325769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.02994 -47.15441 -40.07218 -37.45611 -36.32994 -33.94451 -31.65878 -29.82181 -29.61894 -28.55179 -26.63168 -23.04903 -21.91199 -21.52581 -21.16788 -19.83424 -19.43273 -18.00452 -17.39909 -16.81595 -16.38010 -16.07930 -15.79561 -14.90861 -14.51735 -14.29304 -14.05236 -13.82446 -13.57295 -13.47592 -13.42078 -12.95765 -12.54589 -12.35661 -12.13241 -12.02155 -11.94652 -11.69773 -11.56566 -11.19956 -11.10965 -10.84312 -10.70519 -10.42448 -10.37348 -10.08671 -9.77095 -9.57262 -9.20818 -8.76436 -8.45238 -8.25131 -6.46377 -4.05309 2.75784 3.27863 3.38217 3.43812 3.50355 3.58953 3.71946 3.82477 4.19657 4.44963 4.63334 4.78406 4.82177 4.88523 4.96976 5.17530 5.21618 5.32191 5.41940 5.59856 5.65503 5.71692 5.77321 5.85217 6.08188 6.36375 6.38996 6.59593 6.67838 6.73627 6.86194 7.03209 7.11734 7.21296 7.34141 7.53999 7.77844 8.03487 8.27971 8.43288 8.84132 9.56960 10.91260 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.003481 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.035665 B = 8042.242891 C = 8331.628397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.035 3.965 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.569 4.569 8 C -0.006 4.006 9 C -0.113 4.113 10 C 0.155 3.845 11 H 0.077 0.923 12 N -0.721 5.721 13 C 0.513 3.487 14 O -0.537 6.537 15 C -0.112 4.112 16 H 0.109 0.891 17 C -0.115 4.115 18 C -0.156 4.156 19 C 0.278 3.722 20 F -0.200 7.200 21 F -0.191 7.191 22 C -0.157 4.157 23 C -0.111 4.111 24 C 0.004 3.996 25 H 0.271 0.729 26 H 0.030 0.970 27 H 0.014 0.986 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.394 0.606 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.008 0.992 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -14.922 -10.008 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.170 4.170 3 Si 0.892 3.108 4 H -0.212 1.212 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.588 4.588 8 C -0.044 4.044 9 C -0.152 4.152 10 C 0.052 3.948 11 H 0.096 0.904 12 N -0.370 5.370 13 C 0.298 3.702 14 O -0.414 6.414 15 C -0.134 4.134 16 H 0.128 0.872 17 C -0.153 4.153 18 C -0.194 4.194 19 C 0.242 3.758 20 F -0.181 7.181 21 F -0.172 7.172 22 C -0.195 4.195 23 C -0.149 4.149 24 C -0.034 4.034 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.227 0.773 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.929 -13.151 -9.336 18.435 hybrid contribution 0.035 -1.897 -0.330 1.926 sum 8.964 -15.048 -9.667 20.006 Atomic orbital electron populations 1.70807 1.06870 1.31106 1.45685 1.25756 0.96201 1.01898 0.93116 0.83623 0.74870 0.75181 0.77108 1.21240 1.20899 1.21445 1.21029 0.91189 0.92450 1.54110 1.19670 0.96941 0.94374 0.93437 1.21982 0.97238 0.95209 1.00794 1.21025 0.95235 0.88123 0.90376 0.90448 1.46362 1.21097 1.43549 1.25951 1.20268 0.81657 0.81117 0.87173 1.90687 1.53757 1.65193 1.31802 1.21863 0.95328 0.96353 0.99856 0.87243 1.22355 0.97134 0.91796 1.03998 1.23453 0.94362 1.00559 1.01028 1.21906 0.84538 0.91716 0.77669 1.92992 1.56113 1.81501 1.87448 1.93038 1.94419 1.93506 1.36229 1.23119 0.98017 0.91148 1.07258 1.21856 0.92687 0.98398 1.02003 1.19392 0.97507 0.94091 0.92421 0.91589 0.95195 0.96777 0.94556 0.93051 0.77260 0.89859 0.89072 0.87965 0.88759 0.88218 0.86438 0.94672 0.92721 0.97367 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.30 13.66 55.43 0.76 -25.54 16 2 C 0.04 0.96 5.46 -17.82 -0.10 0.86 16 3 Si 1.06 24.69 27.48 -169.99 -4.67 20.02 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.27 6.71 56.52 0.38 -5.89 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.57 -14.76 5.50 -98.93 -0.54 -15.30 16 8 C -0.01 -0.14 5.58 -27.26 -0.15 -0.29 16 9 C -0.11 -2.35 5.51 -26.41 -0.15 -2.49 16 10 C 0.16 2.95 2.35 -67.97 -0.16 2.79 16 11 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 12 N -0.72 -10.56 5.02 -53.85 -0.27 -10.83 16 13 C 0.51 7.57 6.95 -10.99 -0.08 7.50 16 14 O -0.54 -10.32 14.87 5.56 0.08 -10.24 16 15 C -0.11 -1.11 3.30 -90.65 -0.30 -1.41 16 16 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.12 -0.91 6.31 -25.07 -0.16 -1.07 16 18 C -0.16 -1.17 6.49 -24.73 -0.16 -1.33 16 19 C 0.28 2.98 2.49 -25.09 -0.06 2.92 16 20 F -0.20 -2.27 17.16 2.25 0.04 -2.23 16 21 F -0.19 -2.59 17.17 2.25 0.04 -2.55 16 22 C -0.16 -1.68 6.01 -25.63 -0.15 -1.83 16 23 C -0.11 -2.18 5.40 -26.64 -0.14 -2.33 16 24 C 0.00 0.10 5.96 -27.48 -0.16 -0.07 16 25 H 0.27 7.74 6.36 -40.82 -0.26 7.48 16 26 H 0.03 0.69 5.01 -51.92 -0.26 0.43 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.39 4.53 8.60 -40.82 -0.35 4.17 16 31 H 0.08 0.79 7.85 -51.92 -0.41 0.39 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.12 1.59 6.37 -51.93 -0.33 1.26 16 37 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.04 1.01 5.79 -51.93 -0.30 0.71 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -31.08 320.68 -7.28 -38.36 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.77 Total: 0.23 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.32 Total: -12.04 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.49 Total: -36.38 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.08 Total: -4.78 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.67 Total: 20.02 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.08 -7.28 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186889354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.209 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds