Wall clock time and date at job start Fri Apr 10 2020 15:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99750 * 2 1 4 4 H 1.48504 * 109.46902 * 270.00129 * 3 2 1 5 5 H 1.48495 * 109.47270 * 149.99828 * 3 2 1 6 6 H 1.48500 * 109.47240 * 29.99695 * 3 2 1 7 7 C 1.37871 * 120.00422 * 179.97438 * 2 1 3 8 8 C 1.51265 * 120.85368 * 174.56911 * 7 2 1 9 9 C 1.53659 * 108.31243 * 231.38391 * 8 7 2 10 10 C 1.52959 * 109.32409 * 305.13494 * 9 8 7 11 11 H 1.09000 * 109.41457 * 303.62256 * 10 9 8 12 12 N 1.46500 * 109.36069 * 183.80043 * 10 9 8 13 13 C 1.34779 * 120.00224 * 84.67865 * 12 10 9 14 14 O 1.21279 * 119.99744 * 0.02562 * 13 12 10 15 15 C 1.50698 * 119.99891 * 180.02562 * 13 12 10 16 16 H 1.08993 * 110.01732 * 58.61298 * 15 13 12 17 17 C 1.54260 * 110.03263 * 297.16931 * 15 13 12 18 18 C 1.54896 * 104.19628 * 217.10786 * 17 15 13 19 19 C 1.54894 * 102.74863 * 37.94179 * 18 17 15 20 20 F 1.39894 * 110.48728 * 203.38254 * 19 18 17 21 21 F 1.39901 * 110.59544 * 80.79018 * 19 18 17 22 22 C 1.53880 * 110.02808 * 180.02562 * 15 13 12 23 23 C 1.52955 * 109.81398 * 63.72784 * 10 9 8 24 24 C 1.51271 * 120.84793 * 354.28879 * 7 2 1 25 25 H 0.97002 * 120.00071 * 185.61176 * 1 2 3 26 26 H 1.09007 * 109.62679 * 351.04199 * 8 7 2 27 27 H 1.09003 * 109.62682 * 111.60889 * 8 7 2 28 28 H 1.09002 * 109.41498 * 185.24865 * 9 8 7 29 29 H 1.08996 * 109.64071 * 65.16125 * 9 8 7 30 30 H 0.97004 * 119.99738 * 264.68566 * 12 10 9 31 31 H 1.09008 * 110.48978 * 335.78199 * 17 15 13 32 32 H 1.08997 * 110.49038 * 98.43172 * 17 15 13 33 33 H 1.08999 * 110.75268 * 279.63108 * 18 17 15 34 34 H 1.08994 * 110.75790 * 156.25565 * 18 17 15 35 35 H 1.08995 * 110.03344 * 238.57076 * 22 15 13 36 36 H 1.09003 * 110.03165 * 359.95536 * 22 15 13 37 37 H 1.09008 * 109.48039 * 176.42213 * 23 10 9 38 38 H 1.08998 * 109.48721 * 56.38322 * 23 10 9 39 39 H 1.09003 * 109.62737 * 248.38831 * 24 7 2 40 40 H 1.08997 * 109.62522 * 8.76632 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 3.5466 1.4404 0.7000 6 1 1.4465 2.6527 0.7000 7 6 2.0046 -1.1939 0.0005 8 6 3.5120 -1.2193 -0.1224 9 6 3.8880 -2.1912 -1.2516 10 6 3.2557 -3.5564 -0.9760 11 1 3.5742 -3.9120 0.0038 12 7 3.6873 -4.5077 -2.0032 13 6 4.8594 -5.1593 -1.8685 14 8 5.5566 -4.9584 -0.8967 15 6 5.3035 -6.1374 -2.9253 16 1 5.3763 -5.6363 -3.8905 17 6 4.3059 -7.3109 -3.0119 18 6 5.1976 -8.5484 -3.2818 19 6 6.4466 -8.2663 -2.4102 20 9 7.5547 -8.9643 -2.9021 21 9 6.2042 -8.6118 -1.0764 22 6 6.6643 -6.7453 -2.5424 23 6 1.7311 -3.4365 -1.0025 24 6 1.2734 -2.5118 0.1304 25 1 -0.4850 -0.8360 0.0821 26 1 3.8768 -0.2202 -0.3609 27 1 3.9502 -1.5575 0.8167 28 1 4.9723 -2.2947 -1.2945 29 1 3.5216 -1.8063 -2.2033 30 1 3.1294 -4.6686 -2.7803 31 1 3.7691 -7.4256 -2.0702 32 1 3.6071 -7.1577 -3.8343 33 1 5.4676 -8.6073 -4.3362 34 1 4.6989 -9.4618 -2.9579 35 1 7.3977 -6.5398 -3.3221 36 1 7.0038 -6.3321 -1.5926 37 1 1.2865 -4.4228 -0.8688 38 1 1.4155 -3.0221 -1.9599 39 1 1.5081 -2.9675 1.0923 40 1 0.1990 -2.3431 0.0576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186889354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:18 Heat of formation + Delta-G solvation = -189.910557 kcal Electronic energy + Delta-G solvation = -23429.617774 eV Core-core repulsion = 19684.453196 eV Total energy + Delta-G solvation = -3745.164579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.90202 -48.05002 -41.25958 -38.88070 -37.44197 -35.58629 -33.39981 -31.59087 -30.42580 -29.59456 -28.15586 -24.56610 -23.36433 -22.84690 -22.19074 -21.32457 -20.76855 -18.95305 -18.55925 -18.12267 -17.62057 -17.34037 -16.81342 -16.19830 -15.83821 -15.63068 -15.20895 -15.09153 -14.87208 -14.66713 -14.39436 -14.26120 -14.17939 -13.77072 -13.51392 -13.15983 -12.94987 -12.87388 -12.69349 -12.52550 -12.42537 -12.19322 -12.09293 -11.92145 -11.90693 -11.58660 -11.48131 -11.20875 -10.74557 -10.56490 -10.37564 -9.91691 -8.58736 -6.16838 1.51169 1.58365 1.62739 1.75950 2.15127 2.54069 2.76709 2.93291 3.07362 3.15520 3.44181 3.82649 3.92695 4.00509 4.10186 4.13474 4.19704 4.32560 4.40752 4.47637 4.61901 4.75279 4.80736 4.87670 4.88727 4.91269 4.93777 5.05499 5.10758 5.13216 5.14943 5.17857 5.25066 5.46905 5.60820 5.68390 6.03541 6.22854 6.62377 6.75889 7.30124 7.51969 8.79179 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.003481 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.035665 B = 8042.242891 C = 8331.628397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.013 4.013 3 Si 1.096 2.904 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.293 1.293 7 C -0.575 4.575 8 C -0.012 4.012 9 C -0.105 4.105 10 C 0.166 3.834 11 H 0.048 0.952 12 N -0.708 5.708 13 C 0.509 3.491 14 O -0.588 6.588 15 C -0.100 4.100 16 H 0.149 0.851 17 C -0.111 4.111 18 C -0.144 4.144 19 C 0.263 3.737 20 F -0.205 7.205 21 F -0.215 7.215 22 C -0.159 4.159 23 C -0.097 4.097 24 C -0.004 4.004 25 H 0.261 0.739 26 H 0.035 0.965 27 H 0.001 0.999 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.415 0.585 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.060 0.940 39 H -0.005 1.005 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 -15.966 -12.937 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.212 4.212 3 Si 0.920 3.080 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.219 1.219 7 C -0.594 4.594 8 C -0.050 4.050 9 C -0.144 4.144 10 C 0.062 3.938 11 H 0.066 0.934 12 N -0.359 5.359 13 C 0.296 3.704 14 O -0.468 6.468 15 C -0.121 4.121 16 H 0.167 0.833 17 C -0.149 4.149 18 C -0.181 4.181 19 C 0.227 3.773 20 F -0.186 7.186 21 F -0.196 7.196 22 C -0.198 4.198 23 C -0.135 4.135 24 C -0.043 4.043 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.252 0.748 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.014 0.986 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.562 -14.229 -12.304 21.102 hybrid contribution -0.111 -1.638 0.668 1.773 sum 9.451 -15.867 -11.636 21.829 Atomic orbital electron populations 1.70905 1.07882 1.30597 1.48639 1.26892 0.96266 1.05049 0.92993 0.83200 0.74418 0.72262 0.78147 1.19385 1.19458 1.21928 1.21539 0.92572 0.93067 1.52236 1.19709 0.95446 0.95652 0.94189 1.21844 0.97517 0.95353 0.99697 1.20558 0.94531 0.88255 0.90488 0.93396 1.46044 1.21626 1.42566 1.25615 1.21171 0.80691 0.81037 0.87476 1.90682 1.55171 1.66770 1.34213 1.21925 0.95071 0.95847 0.99305 0.83301 1.22424 0.97099 0.90802 1.04575 1.23502 0.92146 1.00614 1.01860 1.22404 0.85944 0.91736 0.77205 1.92977 1.56716 1.81593 1.87339 1.92990 1.94599 1.93689 1.38332 1.23133 0.99241 0.91122 1.06259 1.21626 0.93142 0.98588 1.00175 1.19423 0.96523 0.94640 0.93682 0.92678 0.94688 0.98043 0.94283 0.92225 0.74825 0.91861 0.85228 0.84925 0.87987 0.85832 0.90000 0.92172 0.92136 0.98619 0.95816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.53 13.66 21.44 0.29 -55.23 16 2 C -0.01 -0.73 5.46 84.65 0.46 -0.27 16 3 Si 1.10 49.40 27.48 68.60 1.88 51.29 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.41 6.71 99.48 0.67 -10.74 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.57 -30.00 5.50 -16.17 -0.09 -30.09 16 8 C -0.01 -0.55 5.58 30.25 0.17 -0.38 16 9 C -0.11 -4.22 5.51 30.80 0.17 -4.05 16 10 C 0.17 6.15 2.35 44.96 0.11 6.25 16 11 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 12 N -0.71 -18.95 5.02 -442.67 -2.22 -21.18 16 13 C 0.51 14.09 6.95 87.66 0.61 14.70 16 14 O -0.59 -22.68 14.87 -3.02 -0.04 -22.73 16 15 C -0.10 -1.64 3.30 -10.82 -0.04 -1.67 16 16 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 17 C -0.11 -1.30 6.31 31.67 0.20 -1.10 16 18 C -0.14 -1.59 6.49 31.89 0.21 -1.38 16 19 C 0.26 5.17 2.49 31.65 0.08 5.25 16 20 F -0.21 -4.31 17.16 44.97 0.77 -3.54 16 21 F -0.21 -5.82 17.17 44.97 0.77 -5.05 16 22 C -0.16 -3.10 6.01 31.30 0.19 -2.91 16 23 C -0.10 -3.68 5.40 30.66 0.17 -3.52 16 24 C 0.00 -0.22 5.96 30.11 0.18 -0.04 16 25 H 0.26 15.38 6.36 -92.71 -0.59 14.79 16 26 H 0.03 1.58 5.01 -2.38 -0.01 1.57 16 27 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.41 7.82 8.60 -92.71 -0.80 7.03 16 31 H 0.06 1.03 7.85 -2.38 -0.02 1.01 16 32 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.12 1.75 8.11 -2.39 -0.02 1.73 16 36 H 0.08 2.25 6.37 -2.39 -0.02 2.23 16 37 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.02 1.21 5.79 -2.39 -0.01 1.19 16 Total: -1.00 -70.87 320.68 4.27 -66.60 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.40 Total: 9.04 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 2.41 Total: -19.20 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -1.93 Total: -76.41 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.04 Total: -22.73 kcal Atomic # 9 Polarization: -10.13 SS G_CDS: 1.54 Total: -8.59 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.88 Total: 51.29 kcal Total: -70.87 4.27 -66.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186889354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.312 kcal (2) G-P(sol) polarization free energy of solvation -70.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds