Wall clock time and date at job start Fri Apr 10 2020 15:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47072 * 274.98907 * 3 2 1 5 5 H 1.48497 * 109.47344 * 34.99160 * 3 2 1 6 6 H 1.48496 * 109.47441 * 154.99436 * 3 2 1 7 7 C 1.37881 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00107 * 189.57846 * 7 2 1 9 9 C 1.50698 * 119.99650 * 9.57746 * 7 2 1 10 10 C 1.53042 * 109.45957 * 185.44885 * 9 7 2 11 11 C 1.53197 * 109.30963 * 178.62867 * 10 9 7 12 12 N 1.46919 * 108.77723 * 54.63573 * 11 10 9 13 13 C 1.34780 * 120.62943 * 126.36268 * 12 11 10 14 14 O 1.21283 * 119.99984 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99913 * 179.97438 * 13 12 11 16 16 C 1.53006 * 109.47305 * 180.02562 * 15 13 12 17 17 C 1.53776 * 113.61573 * 175.00409 * 16 15 13 18 18 C 1.53781 * 87.08194 * 139.98316 * 17 16 15 19 19 F 1.39897 * 113.61875 * 89.11477 * 18 17 16 20 20 F 1.39901 * 113.60953 * 220.02053 * 18 17 16 21 21 C 1.53782 * 113.61438 * 272.50347 * 16 15 13 22 22 C 1.46920 * 118.74006 * 306.64003 * 12 11 10 23 23 C 1.52762 * 109.00632 * 53.31037 * 22 12 11 24 24 H 0.96997 * 120.00180 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46294 * 305.42230 * 9 7 2 26 26 H 1.09001 * 109.49649 * 58.67790 * 10 9 7 27 27 H 1.09001 * 109.52264 * 298.59542 * 10 9 7 28 28 H 1.09002 * 109.58842 * 294.84186 * 11 10 9 29 29 H 1.08998 * 109.69890 * 174.49391 * 11 10 9 30 30 H 1.08998 * 109.47033 * 60.00819 * 15 13 12 31 31 H 1.08997 * 109.47553 * 300.00400 * 15 13 12 32 32 H 1.09005 * 112.90608 * 43.74717 * 16 15 13 33 33 H 1.09006 * 113.61346 * 254.52945 * 17 16 15 34 34 H 1.09000 * 113.61694 * 25.42768 * 17 16 15 35 35 H 1.09000 * 113.61131 * 334.56431 * 21 16 15 36 36 H 1.08993 * 113.61510 * 105.38300 * 21 16 15 37 37 H 1.08999 * 109.58751 * 173.14489 * 22 12 11 38 38 H 1.08995 * 109.58864 * 293.56834 * 22 12 11 39 39 H 1.09004 * 109.56116 * 185.55253 * 23 22 12 40 40 H 1.09002 * 109.36350 * 65.50129 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4122 0.5918 7 6 2.0047 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1562 9 6 1.2670 -2.4901 -0.2160 10 6 2.2330 -3.6631 -0.0344 11 6 1.4722 -4.9796 -0.2215 12 7 0.7939 -4.9528 -1.5244 13 6 0.9781 -5.9474 -2.4151 14 8 1.7091 -6.8764 -2.1441 15 6 0.2748 -5.9058 -3.7472 16 6 0.6525 -7.1443 -4.5624 17 6 -0.1078 -7.2608 -5.8940 18 6 1.2140 -7.7407 -6.5163 19 9 1.3974 -9.1257 -6.4440 20 9 1.4504 -7.2261 -7.7956 21 6 1.9308 -6.9652 -5.3984 22 6 -0.0842 -3.8180 -1.8405 23 6 0.6897 -2.5173 -1.6331 24 1 -0.4850 0.8400 -0.0004 25 1 0.4562 -2.5719 0.5079 26 1 2.6615 -3.6297 0.9673 27 1 3.0309 -3.5958 -0.7739 28 1 0.7339 -5.0911 0.5727 29 1 2.1711 -5.8154 -0.1905 30 1 0.5749 -5.0087 -4.2887 31 1 -0.8035 -5.8907 -3.5886 32 1 0.6419 -8.0604 -3.9718 33 1 -0.8882 -8.0218 -5.8860 34 1 -0.4526 -6.3036 -6.2851 35 1 2.1434 -5.9271 -5.6540 36 1 2.7964 -7.4862 -4.9895 37 1 -0.4101 -3.8862 -2.8784 38 1 -0.9520 -3.8327 -1.1812 39 1 0.0197 -1.6684 -1.7694 40 1 1.5018 -2.4604 -2.3579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567482922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:48 Heat of formation + Delta-G solvation = -131.918675 kcal Electronic energy + Delta-G solvation = -23158.895287 eV Core-core repulsion = 19416.245425 eV Total energy + Delta-G solvation = -3742.649862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.94595 -47.28516 -40.00749 -38.14806 -36.69487 -33.55287 -31.67736 -30.49693 -29.58545 -26.45457 -26.21810 -23.84278 -22.75118 -22.21610 -20.31736 -19.76146 -18.41031 -17.49614 -17.03305 -16.69715 -16.41348 -16.13793 -15.70547 -15.17035 -14.57398 -14.49015 -14.15661 -13.61556 -13.54797 -13.43603 -13.16328 -13.04731 -12.79297 -12.64843 -12.59196 -12.12176 -11.79762 -11.46407 -11.36372 -11.23942 -11.01147 -10.96412 -10.69473 -10.58409 -10.45099 -10.25116 -9.74554 -9.48337 -9.14680 -9.03974 -8.40788 -8.09545 -6.11154 -4.12663 2.89633 3.24755 3.29061 3.32954 3.35943 3.36963 3.62853 4.08517 4.17456 4.21746 4.37650 4.81101 5.02183 5.17585 5.20654 5.21559 5.28096 5.32173 5.48885 5.58939 5.62346 5.65087 5.75601 5.87519 5.99284 6.10014 6.10564 6.17275 6.38538 6.55968 6.81748 6.95842 7.02720 7.11754 7.58183 7.82528 7.84695 7.90129 8.34279 8.47450 8.91052 9.51529 10.97515 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.003422 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.714922 B = 8181.539512 C = 8638.490717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.600 5.600 13 C 0.510 3.490 14 O -0.557 6.557 15 C -0.129 4.129 16 C -0.086 4.086 17 C -0.162 4.162 18 C 0.251 3.749 19 F -0.181 7.181 20 F -0.194 7.194 21 C -0.158 4.158 22 C 0.103 3.897 23 C -0.119 4.119 24 H 0.260 0.740 25 H 0.035 0.965 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 -11.730 -10.144 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.332 5.332 13 C 0.298 3.702 14 O -0.437 6.437 15 C -0.169 4.169 16 C -0.105 4.105 17 C -0.200 4.200 18 C 0.215 3.785 19 F -0.162 7.162 20 F -0.175 7.175 21 C -0.196 4.196 22 C -0.019 4.019 23 C -0.158 4.158 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.362 -12.104 -10.014 15.886 hybrid contribution 0.443 1.043 -0.206 1.152 sum -1.919 -11.062 -10.220 15.182 Atomic orbital electron populations 1.69945 1.05890 1.26597 1.50301 1.24947 0.94776 0.99036 0.94948 0.86668 0.80129 0.83762 0.78005 1.20719 1.21299 1.19903 1.21171 0.94150 0.90920 1.49141 0.92688 1.18644 0.94183 0.91830 0.92502 1.22003 0.98998 0.94259 1.00836 1.21710 0.96367 0.99758 0.83304 1.48235 1.46440 1.21814 1.16736 1.20465 0.81916 0.81998 0.85774 1.90646 1.39422 1.34807 1.78803 1.21626 1.02051 0.98933 0.94248 1.22162 0.94371 1.00095 0.93848 1.24194 0.95914 1.04105 0.95786 1.22145 1.00241 0.76374 0.79777 1.93010 1.96220 1.30718 1.96247 1.93003 1.95570 1.85957 1.42942 1.24172 0.99955 1.02174 0.93309 1.21934 0.93096 0.87125 0.99786 1.21877 0.99178 0.94320 1.00391 0.92987 0.94719 0.92030 0.93064 0.92186 0.90326 0.88352 0.88287 0.86883 0.88781 0.86822 0.87076 0.88532 0.91363 0.91723 0.89584 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 12.16 55.43 0.67 -23.30 16 2 C 0.06 1.70 5.19 -17.82 -0.09 1.60 16 3 Si 0.89 20.43 29.55 -169.99 -5.02 15.41 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.40 8.48 -34.44 -0.29 -13.69 16 8 H 0.05 1.44 7.77 -52.49 -0.41 1.03 16 9 C 0.05 1.07 1.93 -91.73 -0.18 0.89 16 10 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 11 C 0.11 1.93 6.43 -3.71 -0.02 1.91 16 12 N -0.60 -9.85 2.98 -173.04 -0.52 -10.37 16 13 C 0.51 7.85 7.70 -10.99 -0.08 7.77 16 14 O -0.56 -10.15 15.17 5.56 0.08 -10.07 16 15 C -0.13 -1.39 3.88 -27.88 -0.11 -1.50 16 16 C -0.09 -0.88 3.13 -89.81 -0.28 -1.16 16 17 C -0.16 -1.34 7.43 -25.92 -0.19 -1.53 16 18 C 0.25 2.65 3.28 -25.92 -0.08 2.57 16 19 F -0.18 -2.20 17.38 2.25 0.04 -2.16 16 20 F -0.19 -2.27 17.41 2.25 0.04 -2.23 16 21 C -0.16 -1.65 7.42 -25.92 -0.19 -1.84 16 22 C 0.10 1.64 6.31 -3.94 -0.02 1.62 16 23 C -0.12 -2.42 5.19 -26.83 -0.14 -2.56 16 24 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 30 H 0.10 0.96 7.38 -51.93 -0.38 0.57 16 31 H 0.10 0.88 7.95 -51.93 -0.41 0.47 16 32 H 0.11 1.31 7.68 -51.93 -0.40 0.91 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.11 1.05 7.90 -51.93 -0.41 0.64 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.95 6.87 -51.93 -0.36 1.60 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -28.92 327.62 -7.57 -36.49 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.98 Total: -0.22 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.83 Total: -8.49 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.16 Total: -33.67 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.08 Total: -4.39 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.92 -7.57 -36.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567482922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.428 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds