Wall clock time and date at job start Fri Apr 10 2020 15:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47072 * 274.98907 * 3 2 1 5 5 H 1.48497 * 109.47344 * 34.99160 * 3 2 1 6 6 H 1.48496 * 109.47441 * 154.99436 * 3 2 1 7 7 C 1.37881 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00107 * 189.57846 * 7 2 1 9 9 C 1.50698 * 119.99650 * 9.57746 * 7 2 1 10 10 C 1.53042 * 109.45957 * 185.44885 * 9 7 2 11 11 C 1.53197 * 109.30963 * 178.62867 * 10 9 7 12 12 N 1.46919 * 108.77723 * 54.63573 * 11 10 9 13 13 C 1.34780 * 120.62943 * 126.36268 * 12 11 10 14 14 O 1.21283 * 119.99984 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99913 * 179.97438 * 13 12 11 16 16 C 1.53006 * 109.47305 * 180.02562 * 15 13 12 17 17 C 1.53776 * 113.61573 * 175.00409 * 16 15 13 18 18 C 1.53781 * 87.08194 * 139.98316 * 17 16 15 19 19 F 1.39897 * 113.61875 * 89.11477 * 18 17 16 20 20 F 1.39901 * 113.60953 * 220.02053 * 18 17 16 21 21 C 1.53782 * 113.61438 * 272.50347 * 16 15 13 22 22 C 1.46920 * 118.74006 * 306.64003 * 12 11 10 23 23 C 1.52762 * 109.00632 * 53.31037 * 22 12 11 24 24 H 0.96997 * 120.00180 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46294 * 305.42230 * 9 7 2 26 26 H 1.09001 * 109.49649 * 58.67790 * 10 9 7 27 27 H 1.09001 * 109.52264 * 298.59542 * 10 9 7 28 28 H 1.09002 * 109.58842 * 294.84186 * 11 10 9 29 29 H 1.08998 * 109.69890 * 174.49391 * 11 10 9 30 30 H 1.08998 * 109.47033 * 60.00819 * 15 13 12 31 31 H 1.08997 * 109.47553 * 300.00400 * 15 13 12 32 32 H 1.09005 * 112.90608 * 43.74717 * 16 15 13 33 33 H 1.09006 * 113.61346 * 254.52945 * 17 16 15 34 34 H 1.09000 * 113.61694 * 25.42768 * 17 16 15 35 35 H 1.09000 * 113.61131 * 334.56431 * 21 16 15 36 36 H 1.08993 * 113.61510 * 105.38300 * 21 16 15 37 37 H 1.08999 * 109.58751 * 173.14489 * 22 12 11 38 38 H 1.08995 * 109.58864 * 293.56834 * 22 12 11 39 39 H 1.09004 * 109.56116 * 185.55253 * 23 22 12 40 40 H 1.09002 * 109.36350 * 65.50129 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4122 0.5918 7 6 2.0047 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1562 9 6 1.2670 -2.4901 -0.2160 10 6 2.2330 -3.6631 -0.0344 11 6 1.4722 -4.9796 -0.2215 12 7 0.7939 -4.9528 -1.5244 13 6 0.9781 -5.9474 -2.4151 14 8 1.7091 -6.8764 -2.1441 15 6 0.2748 -5.9058 -3.7472 16 6 0.6525 -7.1443 -4.5624 17 6 -0.1078 -7.2608 -5.8940 18 6 1.2140 -7.7407 -6.5163 19 9 1.3974 -9.1257 -6.4440 20 9 1.4504 -7.2261 -7.7956 21 6 1.9308 -6.9652 -5.3984 22 6 -0.0842 -3.8180 -1.8405 23 6 0.6897 -2.5173 -1.6331 24 1 -0.4850 0.8400 -0.0004 25 1 0.4562 -2.5719 0.5079 26 1 2.6615 -3.6297 0.9673 27 1 3.0309 -3.5958 -0.7739 28 1 0.7339 -5.0911 0.5727 29 1 2.1711 -5.8154 -0.1905 30 1 0.5749 -5.0087 -4.2887 31 1 -0.8035 -5.8907 -3.5886 32 1 0.6419 -8.0604 -3.9718 33 1 -0.8882 -8.0218 -5.8860 34 1 -0.4526 -6.3036 -6.2851 35 1 2.1434 -5.9271 -5.6540 36 1 2.7964 -7.4862 -4.9895 37 1 -0.4101 -3.8862 -2.8784 38 1 -0.9520 -3.8327 -1.1812 39 1 0.0197 -1.6684 -1.7694 40 1 1.5018 -2.4604 -2.3579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567482922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:47 Heat of formation + Delta-G solvation = -146.812195 kcal Electronic energy + Delta-G solvation = -23159.541118 eV Core-core repulsion = 19416.245425 eV Total energy + Delta-G solvation = -3743.295693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.79750 -48.15041 -41.21706 -39.15150 -38.05347 -35.27876 -33.25818 -31.98769 -30.71171 -27.93164 -27.16236 -25.13524 -24.17542 -23.56804 -21.56216 -20.78961 -19.76050 -18.56889 -18.36779 -17.88303 -17.49802 -17.20582 -16.85904 -16.50078 -16.28217 -15.57317 -15.02370 -14.87365 -14.80440 -14.62153 -14.46765 -14.32841 -14.16921 -13.88744 -13.46628 -13.31274 -13.19696 -13.17818 -12.77347 -12.48629 -12.26057 -12.17113 -12.06650 -11.89800 -11.81804 -11.46328 -11.34369 -10.98926 -10.88424 -10.61396 -10.38575 -9.50180 -8.11487 -6.18872 1.40941 1.44350 1.52528 1.71503 2.13284 2.45011 2.55211 2.87014 3.18487 3.27254 3.40058 3.41446 3.78203 4.09269 4.23258 4.30138 4.38334 4.44700 4.50177 4.52750 4.57003 4.60970 4.70245 4.73579 4.80612 4.86119 4.89946 4.90920 5.00351 5.20240 5.28067 5.33488 5.40291 5.56229 5.68556 5.99183 6.07096 6.39807 6.58942 6.91050 7.25355 7.47666 8.95876 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.003422 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.714922 B = 8181.539512 C = 8638.490717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.044 0.956 9 C 0.044 3.956 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.606 5.606 13 C 0.507 3.493 14 O -0.589 6.589 15 C -0.122 4.122 16 C -0.086 4.086 17 C -0.141 4.141 18 C 0.239 3.761 19 F -0.195 7.195 20 F -0.202 7.202 21 C -0.163 4.163 22 C 0.114 3.886 23 C -0.111 4.111 24 H 0.262 0.738 25 H 0.006 0.994 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -11.701 -11.575 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.338 5.338 13 C 0.297 3.703 14 O -0.471 6.471 15 C -0.161 4.161 16 C -0.104 4.104 17 C -0.178 4.178 18 C 0.203 3.797 19 F -0.176 7.176 20 F -0.182 7.182 21 C -0.201 4.201 22 C -0.008 4.008 23 C -0.150 4.150 24 H 0.071 0.929 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.401 -12.081 -11.455 16.992 hybrid contribution 0.836 1.015 0.284 1.345 sum -2.565 -11.066 -11.171 15.932 Atomic orbital electron populations 1.70031 1.06834 1.27235 1.50894 1.25565 0.95523 1.01735 0.94804 0.85794 0.78874 0.80355 0.78126 1.20070 1.21059 1.19943 1.21518 0.93955 0.92752 1.49290 0.93745 1.18614 0.93678 0.91733 0.93464 1.21843 0.98305 0.94599 1.00391 1.21524 0.96443 0.98004 0.84666 1.48296 1.46572 1.22390 1.16514 1.21302 0.81322 0.80847 0.86801 1.90639 1.40856 1.35953 1.79604 1.21711 1.03232 0.99881 0.91301 1.22062 0.94738 0.99230 0.94417 1.24163 0.94731 1.05623 0.93296 1.22466 1.02122 0.75705 0.79411 1.92982 1.96436 1.31875 1.96275 1.92986 1.95775 1.85977 1.43507 1.24254 0.99690 1.02679 0.93466 1.21842 0.92001 0.84505 1.02485 1.21652 0.98860 0.96120 0.98326 0.92919 0.97543 0.92388 0.93920 0.91577 0.90383 0.86347 0.85262 0.88584 0.87302 0.84363 0.85841 0.90239 0.87022 0.91593 0.92021 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.42 12.16 21.45 0.26 -49.16 16 2 C 0.02 1.23 5.19 84.66 0.44 1.67 16 3 Si 0.94 41.93 29.55 68.60 2.03 43.96 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -28.31 8.48 25.60 0.22 -28.10 16 8 H 0.04 2.37 7.77 -2.91 -0.02 2.35 16 9 C 0.04 2.02 1.93 -11.51 -0.02 1.99 16 10 C -0.11 -4.50 5.30 30.67 0.16 -4.34 16 11 C 0.12 3.99 6.43 86.37 0.56 4.55 16 12 N -0.61 -18.71 2.98 -819.76 -2.44 -21.16 16 13 C 0.51 14.42 7.70 87.66 0.67 15.09 16 14 O -0.59 -20.83 15.17 -3.04 -0.05 -20.87 16 15 C -0.12 -2.15 3.88 29.85 0.12 -2.03 16 16 C -0.09 -1.51 3.13 -10.27 -0.03 -1.55 16 17 C -0.14 -1.80 7.43 31.12 0.23 -1.57 16 18 C 0.24 4.60 3.28 31.12 0.10 4.70 16 19 F -0.19 -4.55 17.38 44.97 0.78 -3.77 16 20 F -0.20 -4.35 17.41 44.97 0.78 -3.57 16 21 C -0.16 -3.13 7.42 31.12 0.23 -2.90 16 22 C 0.11 3.35 6.31 86.22 0.54 3.89 16 23 C -0.11 -4.44 5.19 30.53 0.16 -4.28 16 24 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 25 H 0.01 0.33 8.09 -2.39 -0.02 0.31 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 2.70 7.00 -2.39 -0.02 2.68 16 30 H 0.12 1.71 7.38 -2.39 -0.02 1.69 16 31 H 0.13 1.58 7.95 -2.39 -0.02 1.56 16 32 H 0.10 2.07 7.68 -2.38 -0.02 2.05 16 33 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.14 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.12 2.03 7.90 -2.39 -0.02 2.01 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 2.34 5.93 -2.39 -0.01 2.33 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.78 6.87 -2.39 -0.02 2.76 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -63.53 327.62 5.77 -57.76 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.03 Total: 9.68 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 3.38 Total: -12.86 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -2.18 Total: -70.32 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 1.56 Total: -7.34 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -63.53 5.77 -57.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567482922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.054 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds