Wall clock time and date at job start Fri Apr 10 2020 15:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48499 * 109.47446 * 269.99835 * 3 2 1 5 5 H 1.48508 * 109.47035 * 30.00032 * 3 2 1 6 6 H 1.48498 * 109.47234 * 149.99628 * 3 2 1 7 7 C 1.37875 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99407 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00189 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00449 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47654 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46855 * 65.00192 * 12 11 10 14 14 C 1.46901 * 110.99670 * 182.71833 * 13 12 11 15 15 C 1.53001 * 109.54228 * 59.75985 * 14 13 12 16 16 C 1.50698 * 109.47302 * 54.66219 * 15 14 13 17 17 O 1.20829 * 120.00118 * 354.16336 * 16 15 14 18 18 O 1.34231 * 119.99924 * 174.16282 * 16 15 14 19 19 C 1.53176 * 109.54548 * 299.57996 * 14 13 12 20 20 C 1.53273 * 109.06364 * 297.03184 * 19 14 13 21 21 O 1.42901 * 109.46087 * 302.44364 * 20 19 14 22 22 C 1.42909 * 114.09664 * 61.16132 * 21 20 19 23 23 C 1.53095 * 109.41004 * 298.83972 * 22 21 20 24 24 H 0.96999 * 119.99921 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47125 * 59.99988 * 9 7 2 26 26 H 1.09001 * 109.47213 * 299.99643 * 9 7 2 27 27 H 1.08999 * 109.47077 * 59.99405 * 11 10 9 28 28 H 1.08999 * 109.46839 * 300.00500 * 11 10 9 29 29 H 1.08993 * 109.47047 * 304.99939 * 12 11 10 30 30 H 1.09007 * 109.47270 * 184.99662 * 12 11 10 31 31 H 1.00890 * 111.00068 * 58.76480 * 13 12 11 32 32 H 1.09005 * 109.47196 * 174.66277 * 15 14 13 33 33 H 1.09003 * 109.47440 * 294.66156 * 15 14 13 34 34 H 0.96698 * 116.99939 * 180.02562 * 18 16 15 35 35 H 1.08996 * 109.52124 * 57.02049 * 19 14 13 36 36 H 1.08994 * 109.52408 * 177.20710 * 19 14 13 37 37 H 1.09001 * 109.46138 * 182.44949 * 20 19 14 38 38 H 1.08999 * 109.47013 * 62.44903 * 20 19 14 39 39 H 1.09000 * 109.47832 * 178.86285 * 22 21 20 40 40 H 1.08999 * 109.49141 * 58.82688 * 22 21 20 41 41 H 1.08993 * 109.52151 * 297.69845 * 23 22 21 42 42 H 1.09005 * 109.56784 * 177.54548 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4124 -2.6542 0.0009 12 6 5.8069 -4.1324 0.0015 13 7 5.3675 -4.7569 -1.2536 14 6 5.6727 -6.1938 -1.2616 15 6 4.9576 -6.8754 -0.0932 16 6 3.4837 -6.5681 -0.1582 17 8 3.0643 -5.7914 -0.9833 18 8 2.6368 -7.1572 0.7006 19 6 7.1848 -6.3974 -1.1259 20 6 7.8842 -5.7790 -2.3415 21 8 7.3767 -6.3751 -3.5370 22 6 5.9760 -6.1763 -3.7389 23 6 5.2001 -6.8107 -2.5816 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 5.8152 -2.1707 0.8909 28 1 5.8151 -2.1705 -0.8890 29 1 5.3312 -4.6351 0.8435 30 1 6.8898 -4.2195 0.0909 31 1 5.7794 -4.2954 -2.0506 32 1 5.1070 -7.9534 -0.1548 33 1 5.3647 -6.5053 0.8478 34 1 1.7006 -6.9290 0.6200 35 1 7.5371 -5.9135 -0.2150 36 1 7.4063 -7.4637 -1.0820 37 1 8.9572 -5.9583 -2.2731 38 1 7.6957 -4.7057 -2.3620 39 1 5.6744 -6.6419 -4.6771 40 1 5.7621 -5.1082 -3.7777 41 1 5.3816 -7.8853 -2.5672 42 1 4.1341 -6.6229 -2.7104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:33 Heat of formation + Delta-G solvation = -171.241952 kcal Electronic energy + Delta-G solvation = -24450.761984 eV Core-core repulsion = 20817.494453 eV Total energy + Delta-G solvation = -3633.267532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80989 -39.27004 -37.18334 -36.23833 -35.38904 -32.84138 -32.13113 -31.23655 -29.61025 -28.47211 -26.86251 -24.14245 -23.86823 -21.83251 -21.66110 -21.13109 -18.96542 -17.64740 -16.98519 -16.59663 -16.35292 -16.19026 -15.92899 -15.69305 -15.16040 -15.06655 -14.73794 -14.39276 -14.07467 -13.95994 -12.90802 -12.85466 -12.76409 -12.53276 -12.39867 -12.29888 -12.17049 -11.83146 -11.55181 -11.46233 -11.09556 -10.90419 -10.76374 -10.63796 -10.55368 -10.35745 -9.96891 -9.80930 -9.64835 -9.09463 -8.76349 -8.38044 -8.11761 -6.04999 -4.02626 2.69677 3.26799 3.27798 3.34253 3.35758 3.68626 4.10169 4.39599 4.40416 4.49725 4.62464 4.67396 4.77269 4.98017 5.12891 5.24397 5.26157 5.26539 5.35498 5.38710 5.43249 5.50846 5.55160 5.65374 5.73680 5.83213 5.87647 5.90015 5.97593 6.11490 6.19027 6.66039 6.94372 7.00704 7.06448 7.14104 7.45717 7.67546 8.13217 8.35797 8.76589 9.09812 9.55102 11.08388 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.004570 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.873076 B = 6125.529575 C = 6849.198179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.358 6.358 11 C 0.062 3.938 12 C 0.058 3.942 13 N -0.646 5.646 14 C 0.127 3.873 15 C -0.098 4.098 16 C 0.461 3.539 17 O -0.449 6.449 18 O -0.535 6.535 19 C -0.188 4.188 20 C 0.062 3.938 21 O -0.384 6.384 22 C 0.058 3.942 23 C -0.148 4.148 24 H 0.265 0.735 25 H -0.002 1.002 26 H -0.005 1.005 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.338 0.662 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.409 0.591 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.153 -15.589 -1.975 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.277 6.277 11 C -0.016 4.016 12 C -0.071 4.071 13 N -0.278 5.278 14 C 0.035 3.965 15 C -0.137 4.137 16 C 0.299 3.701 17 O -0.331 6.331 18 O -0.349 6.349 19 C -0.227 4.227 20 C -0.015 4.015 21 O -0.303 6.303 22 C -0.018 4.018 23 C -0.185 4.185 24 H 0.075 0.925 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.159 0.841 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.268 0.732 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.609 -15.654 -2.115 22.208 hybrid contribution 0.759 1.578 0.182 1.761 sum 16.369 -14.076 -1.933 21.675 Atomic orbital electron populations 1.69880 1.06025 1.26888 1.50862 1.24764 0.94775 0.98618 0.94875 0.86866 0.80293 0.83950 0.78680 1.20015 1.20869 1.19262 1.20894 0.88321 0.95248 1.50413 0.89932 1.20570 0.96248 0.80072 0.93878 1.88076 1.16376 1.28409 1.94793 1.22266 0.86130 0.94489 0.98712 1.22080 0.96351 0.95055 0.93596 1.60537 1.63358 0.99998 1.03919 1.20724 0.91326 0.89994 0.94437 1.21387 0.89050 1.02511 1.00712 1.22967 0.89378 0.78591 0.79126 1.90870 1.77851 1.29665 1.34734 1.84446 1.23699 1.67983 1.58733 1.22967 0.97126 1.03065 0.99583 1.22541 0.98454 0.96316 0.84223 1.87924 1.23713 1.77244 1.41424 1.22637 0.80306 1.00492 0.98406 1.22341 1.02982 0.99665 0.93546 0.92502 0.98440 0.98721 0.94270 0.94786 0.90558 0.94524 0.84106 0.88186 0.88073 0.73198 0.90282 0.90296 0.88812 0.93328 0.88658 0.92357 0.91090 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.40 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.51 -15.75 9.99 -34.44 -0.34 -16.09 16 8 H 0.08 2.82 8.06 -52.49 -0.42 2.39 16 9 C 0.17 4.43 4.76 36.00 0.17 4.60 16 10 O -0.36 -8.64 10.27 -35.23 -0.36 -9.00 16 11 C 0.06 1.10 6.24 37.16 0.23 1.33 16 12 C 0.06 0.80 5.28 -3.82 -0.02 0.78 16 13 N -0.65 -9.01 4.23 -99.78 -0.42 -9.43 16 14 C 0.13 1.39 0.28 -131.42 -0.04 1.35 16 15 C -0.10 -1.05 4.33 -27.88 -0.12 -1.17 16 16 C 0.46 6.63 7.79 36.00 0.28 6.91 16 17 O -0.45 -8.38 13.94 -18.75 -0.26 -8.64 16 18 O -0.53 -6.79 13.42 -39.26 -0.53 -7.32 16 19 C -0.19 -1.61 4.67 -26.50 -0.12 -1.73 16 20 C 0.06 0.56 6.58 37.30 0.25 0.81 16 21 O -0.38 -4.25 10.77 -35.23 -0.38 -4.63 16 22 C 0.06 0.62 6.58 37.21 0.24 0.86 16 23 C -0.15 -1.62 4.83 -26.59 -0.13 -1.75 16 24 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 25 H 0.00 -0.05 7.20 -51.93 -0.37 -0.43 16 26 H 0.00 -0.13 7.57 -51.93 -0.39 -0.52 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.10 6.25 -51.93 -0.32 0.78 16 30 H 0.04 0.39 6.40 -51.93 -0.33 0.06 16 31 H 0.34 4.59 5.47 -39.30 -0.21 4.38 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.00 6.65 -51.93 -0.35 0.65 16 34 H 0.41 4.15 9.10 45.56 0.41 4.56 16 35 H 0.08 0.62 6.33 -51.93 -0.33 0.29 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.45 6.91 -51.93 -0.36 0.09 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.67 6.73 -51.93 -0.35 0.32 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.32 6.30 -51.93 -0.33 0.99 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -36.36 329.87 -6.05 -42.42 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.48 Total: 4.00 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.30 Total: -2.05 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.35 Total: -37.05 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.53 Total: -29.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.36 -6.05 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.823 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds