Wall clock time and date at job start Fri Apr 10 2020 15:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99917 * 2 1 4 4 H 1.48504 * 109.46708 * 240.00085 * 3 2 1 5 5 H 1.48492 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47278 * 120.00407 * 3 2 1 7 7 C 1.37877 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99524 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00339 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47325 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00087 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47293 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47245 * 62.29139 * 12 11 10 14 14 C 1.46857 * 110.99641 * 52.14540 * 13 12 11 15 15 C 1.53033 * 109.52154 * 185.84142 * 14 13 12 16 16 C 1.53119 * 109.27821 * 300.81910 * 15 14 13 17 17 C 1.53004 * 109.57379 * 177.59386 * 16 15 14 18 18 H 1.08997 * 109.47221 * 300.28358 * 17 16 15 19 19 O 1.42910 * 109.46964 * 180.28476 * 17 16 15 20 20 C 1.50698 * 109.47306 * 60.28890 * 17 16 15 21 21 O 1.20825 * 120.00569 * 114.99880 * 20 17 16 22 22 O 1.34238 * 119.99432 * 294.99537 * 20 17 16 23 23 C 1.53116 * 109.16370 * 57.65697 * 16 15 14 24 24 C 1.46849 * 111.00347 * 176.35102 * 13 12 11 25 25 H 0.97004 * 120.00062 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46900 * 60.00333 * 9 7 2 27 27 H 1.08999 * 109.47003 * 300.00413 * 9 7 2 28 28 H 1.09002 * 109.46966 * 60.00057 * 11 10 9 29 29 H 1.09003 * 109.47349 * 300.00252 * 11 10 9 30 30 H 1.09004 * 109.47348 * 302.29508 * 12 11 10 31 31 H 1.08997 * 109.47367 * 182.29428 * 12 11 10 32 32 H 1.08994 * 109.45904 * 305.85405 * 14 13 12 33 33 H 1.08995 * 109.45759 * 65.82224 * 14 13 12 34 34 H 1.09001 * 109.50420 * 180.88383 * 15 14 13 35 35 H 1.08997 * 109.54082 * 60.78231 * 15 14 13 36 36 H 1.08998 * 109.52538 * 297.75413 * 16 15 14 37 37 H 0.96694 * 113.99545 * 299.99829 * 19 17 16 38 38 H 0.96697 * 116.99402 * 180.02562 * 22 20 17 39 39 H 1.09000 * 109.51041 * 182.40433 * 23 16 15 40 40 H 1.09000 * 109.50344 * 62.28671 * 23 16 15 41 41 H 1.08997 * 109.46221 * 294.18172 * 24 13 12 42 42 H 1.09007 * 109.45716 * 54.16014 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4496 -5.8469 1.2245 14 6 2.5904 -5.8338 2.4154 15 6 3.4437 -5.5734 3.6588 16 6 4.5038 -6.6713 3.7833 17 6 5.3990 -6.3848 4.9906 18 1 5.8858 -5.4183 4.8608 19 8 6.3916 -7.4071 5.1008 20 6 4.5612 -6.3612 6.2429 21 8 4.7306 -7.1967 7.0991 22 8 3.6265 -5.4117 6.4072 23 6 5.3541 -6.6957 2.5101 24 6 4.4454 -6.9235 1.3000 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8896 28 1 0.9452 -4.9822 -0.8914 29 1 0.9446 -4.9827 0.8886 30 1 3.2930 -5.8238 -0.8704 31 1 2.1798 -6.9396 -0.0433 32 1 1.8438 -5.0460 2.3159 33 1 2.0906 -6.7974 2.5131 34 1 2.8081 -5.5794 4.5442 35 1 3.9330 -4.6037 3.5686 36 1 4.0149 -7.6367 3.9133 37 1 6.0293 -8.2958 5.2187 38 1 3.1144 -5.4372 7.2270 39 1 6.0832 -7.5033 2.5748 40 1 5.8735 -5.7436 2.4011 41 1 3.9368 -7.8820 1.4030 42 1 5.0461 -6.9270 0.3904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:53 Heat of formation + Delta-G solvation = -218.950676 kcal Electronic energy + Delta-G solvation = -23586.082701 eV Core-core repulsion = 19950.746364 eV Total energy + Delta-G solvation = -3635.336337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74397 -40.15647 -38.59346 -37.84118 -37.01384 -35.10330 -34.49046 -31.90367 -30.79308 -29.25596 -28.01196 -24.83879 -24.42508 -24.22140 -22.47432 -21.99068 -20.80682 -19.27504 -18.67716 -18.58106 -17.65112 -17.37343 -16.97323 -16.80425 -16.43032 -15.89007 -15.75300 -15.58907 -15.18914 -14.78989 -14.73351 -14.24707 -14.11933 -13.67487 -13.59836 -13.28204 -13.02047 -12.94265 -12.76070 -12.69611 -12.60660 -12.29483 -12.26959 -12.06639 -11.84344 -11.69362 -11.55103 -11.26828 -11.11244 -10.90102 -10.80371 -10.14329 -9.08136 -8.29213 -6.40888 1.03704 1.41661 1.46347 1.54648 1.98777 2.37212 2.97233 3.04673 3.13110 3.28214 3.51483 3.77082 3.94210 4.08746 4.19651 4.22923 4.29956 4.37013 4.40100 4.51977 4.54869 4.64749 4.67245 4.78694 4.85479 4.91030 4.99307 5.02505 5.07246 5.21505 5.24152 5.32480 5.47407 5.52884 5.58417 6.00388 6.20068 6.32830 6.47420 6.59836 6.88937 6.91323 7.31352 8.82916 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.003739 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.807733 B = 7486.480984 C = 8358.006550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.051 3.949 12 C 0.070 3.930 13 N -0.549 5.549 14 C 0.056 3.944 15 C -0.111 4.111 16 C -0.100 4.100 17 C 0.130 3.870 18 H 0.142 0.858 19 O -0.537 6.537 20 C 0.460 3.540 21 O -0.546 6.546 22 O -0.503 6.503 23 C -0.099 4.099 24 C 0.057 3.943 25 H 0.270 0.730 26 H -0.018 1.018 27 H -0.018 1.018 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.425 0.575 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.098 -17.015 9.009 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.135 3.865 10 O -0.312 6.312 11 C -0.026 4.026 12 C -0.057 4.057 13 N -0.275 5.275 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.119 4.119 17 C 0.069 3.931 18 H 0.160 0.840 19 O -0.345 6.345 20 C 0.303 3.697 21 O -0.437 6.437 22 O -0.317 6.317 23 C -0.136 4.136 24 C -0.071 4.071 25 H 0.079 0.921 26 H -0.001 1.001 27 H 0.000 1.000 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.245 0.755 38 H 0.287 0.713 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.056 -16.155 8.791 20.501 hybrid contribution -1.649 -0.284 0.602 1.778 sum 7.407 -16.439 9.393 20.331 Atomic orbital electron populations 1.70063 1.07742 1.28604 1.50712 1.25923 0.95906 1.03260 0.93970 0.85272 0.78128 0.76871 0.79382 1.19061 1.20022 1.19031 1.21349 0.94042 0.90879 1.51967 0.92149 1.19765 0.88639 0.85029 0.93048 1.87922 1.34501 1.13705 1.95027 1.22694 0.95715 0.84824 0.99400 1.22039 0.94619 0.95537 0.93533 1.61801 1.16808 1.47217 1.01660 1.22077 0.95212 0.99707 0.90181 1.21683 0.97410 0.98528 0.97265 1.21731 0.95944 1.00207 0.94018 1.21615 0.88724 0.95307 0.87502 0.84027 1.86650 1.33045 1.19886 1.94885 1.24783 0.78234 0.77537 0.89154 1.90717 1.67899 1.40009 1.45064 1.84651 1.47562 1.51848 1.47618 1.21513 0.97158 1.03371 0.91587 1.22138 0.93928 0.91485 0.99508 0.92121 1.00065 0.99991 0.93755 0.94022 0.90234 0.91504 0.92514 0.94183 0.89268 0.92061 0.89507 0.75454 0.71314 0.88930 0.91778 0.93911 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -32.84 9.43 25.60 0.24 -32.60 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.96 5.69 71.23 0.41 12.37 16 10 O -0.39 -19.33 10.23 -148.98 -1.52 -20.85 16 11 C 0.05 1.87 5.57 71.98 0.40 2.27 16 12 C 0.07 1.99 5.52 86.30 0.48 2.46 16 13 N -0.55 -15.25 4.67 -896.35 -4.18 -19.44 16 14 C 0.06 1.47 5.05 86.32 0.44 1.91 16 15 C -0.11 -2.48 4.77 30.65 0.15 -2.33 16 16 C -0.10 -1.67 2.01 -10.71 -0.02 -1.70 16 17 C 0.13 2.16 3.10 29.85 0.09 2.25 16 18 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 19 O -0.54 -8.90 12.37 -129.95 -1.61 -10.51 16 20 C 0.46 8.55 7.51 71.24 0.53 9.08 16 21 O -0.55 -13.18 17.08 28.39 0.48 -12.70 16 22 O -0.50 -7.71 10.71 -51.50 -0.55 -8.26 16 23 C -0.10 -1.74 5.20 30.65 0.16 -1.58 16 24 C 0.06 1.14 5.46 86.33 0.47 1.61 16 25 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 26 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 27 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.50 6.05 -2.39 -0.01 1.49 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.86 5.79 -2.39 -0.01 1.84 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.82 5.73 -2.39 -0.01 1.81 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.39 4.41 8.79 -74.06 -0.65 3.76 16 38 H 0.42 3.18 9.10 -74.06 -0.67 2.51 16 39 H 0.09 1.29 7.76 -2.39 -0.02 1.27 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 42 H 0.08 1.55 8.12 -2.38 -0.02 1.54 16 Total: -1.00 -74.66 341.00 -1.56 -76.22 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.29 Total: 10.24 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 3.80 Total: -5.34 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -3.90 Total: -75.48 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -3.20 Total: -52.33 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.66 -1.56 -76.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.733 kcal (2) G-P(sol) polarization free energy of solvation -74.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds