Wall clock time and date at job start Fri Apr 10 2020 15:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 120.00072 * 2 1 4 4 H 1.48488 * 109.47344 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46913 * 300.00058 * 3 2 1 6 6 H 1.48502 * 109.46892 * 59.99448 * 3 2 1 7 7 C 1.38808 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99980 * 157.61630 * 7 2 1 9 9 N 1.36941 * 120.00014 * 337.62502 * 7 2 1 10 10 C 1.46498 * 119.99773 * 326.16991 * 9 7 2 11 11 C 1.53001 * 109.47446 * 264.43373 * 10 9 7 12 12 O 1.42897 * 109.47167 * 64.99619 * 11 10 9 13 13 C 1.42900 * 114.00123 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.49014 * 54.97153 * 13 12 11 15 15 C 1.53093 * 109.48297 * 175.00515 * 13 12 11 16 16 C 1.53177 * 109.21504 * 177.62338 * 15 13 12 17 17 C 1.53183 * 109.03612 * 302.98329 * 16 15 13 18 18 C 1.53092 * 109.15945 * 56.98100 * 17 16 15 19 19 O 1.42900 * 109.41956 * 302.38942 * 18 17 16 20 20 C 1.46503 * 120.00271 * 146.17503 * 9 7 2 21 21 C 1.52999 * 109.46769 * 270.00040 * 20 9 7 22 22 C 1.50705 * 109.46955 * 179.97438 * 21 20 9 23 23 O 1.20829 * 119.99735 * 359.97438 * 22 21 20 24 24 O 1.34227 * 120.00043 * 179.97438 * 22 21 20 25 25 H 0.97000 * 119.99946 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46989 * 144.43014 * 10 9 7 27 27 H 1.09002 * 109.47133 * 24.43527 * 10 9 7 28 28 H 1.09006 * 109.46727 * 305.00342 * 11 10 9 29 29 H 1.08997 * 109.47475 * 185.00079 * 11 10 9 30 30 H 1.09001 * 109.52466 * 57.68241 * 15 13 12 31 31 H 1.09001 * 109.51871 * 297.56037 * 15 13 12 32 32 H 1.08996 * 109.54410 * 62.85216 * 16 15 13 33 33 H 1.08996 * 109.53958 * 183.12076 * 16 15 13 34 34 H 1.08997 * 109.52074 * 176.88652 * 17 16 15 35 35 H 1.08999 * 109.52138 * 297.01569 * 17 16 15 36 36 H 1.09005 * 109.47950 * 62.37172 * 18 17 16 37 37 H 1.09000 * 109.47809 * 182.39062 * 18 17 16 38 38 H 1.09000 * 109.47025 * 29.99453 * 20 9 7 39 39 H 1.08995 * 109.47359 * 149.99437 * 20 9 7 40 40 H 1.09000 * 109.46868 * 299.99510 * 21 20 9 41 41 H 1.08995 * 109.47672 * 59.99589 * 21 20 9 42 42 H 0.96697 * 117.00039 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0293 -1.2374 -0.3556 9 7 1.4030 -2.3432 0.4525 10 6 0.4326 -2.2719 1.5477 11 6 1.1359 -2.5729 2.8727 12 8 2.0925 -1.5477 3.1479 13 6 2.8095 -1.7345 4.3698 14 1 3.2798 -2.7177 4.3688 15 6 3.8860 -0.6538 4.5005 16 6 4.6110 -0.8237 5.8390 17 6 3.5848 -0.7605 6.9746 18 6 2.5198 -1.8370 6.7499 19 8 1.9060 -1.6393 5.4747 20 6 1.7237 -3.6353 -0.1591 21 6 0.7710 -3.8969 -1.3274 22 6 1.1013 -5.2257 -1.9569 23 8 2.0061 -5.8945 -1.5166 24 8 0.3903 -5.6662 -3.0067 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3576 -3.0041 1.3812 27 1 -0.0004 -1.2723 1.5850 28 1 1.6440 -3.5349 2.8040 29 1 0.3993 -2.6075 3.6754 30 1 3.4203 0.3310 4.4609 31 1 4.6012 -0.7515 3.6838 32 1 5.1182 -1.7882 5.8592 33 1 5.3410 -0.0237 5.9624 34 1 4.0846 -0.9357 7.9273 35 1 3.1138 0.2224 6.9856 36 1 2.9864 -2.8217 6.7800 37 1 1.7637 -1.7691 7.5320 38 1 2.7506 -3.6195 -0.5243 39 1 1.6142 -4.4258 0.5832 40 1 -0.2559 -3.9127 -0.9622 41 1 0.8805 -3.1064 -2.0697 42 1 0.6395 -6.5241 -3.3769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:16 Heat of formation + Delta-G solvation = -175.845929 kcal Electronic energy + Delta-G solvation = -23861.927379 eV Core-core repulsion = 20228.460204 eV Total energy + Delta-G solvation = -3633.467175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77391 -39.30143 -36.83227 -35.85504 -35.22557 -33.54602 -31.93150 -30.78632 -29.69074 -27.79992 -24.76834 -24.52544 -23.06329 -22.72021 -21.02230 -20.18253 -19.53681 -17.71535 -16.91237 -16.74478 -16.34920 -15.95326 -15.54459 -15.38007 -14.73061 -14.53687 -14.14931 -14.00673 -13.49888 -13.28971 -13.05389 -12.77552 -12.61424 -12.37920 -12.10405 -11.88674 -11.39173 -11.18514 -11.08889 -11.03539 -10.97552 -10.80280 -10.60200 -10.48702 -10.30205 -10.15045 -10.01540 -9.84705 -9.72354 -9.27824 -9.00690 -8.42140 -6.63442 -5.74842 -3.25921 2.66505 3.43407 3.51020 3.53403 3.57848 3.78649 4.39606 4.57383 4.80543 4.86845 4.99586 5.21320 5.25827 5.38866 5.44401 5.51120 5.61345 5.70515 5.72439 5.83637 5.86280 5.95269 5.99910 6.11920 6.15510 6.18001 6.38371 6.41611 6.42026 6.57436 6.72545 6.74085 6.81524 7.02121 7.41823 7.69320 7.87512 8.00516 8.30378 8.55652 9.21338 9.85768 10.38869 11.27981 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.005052 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.373510 B = 5541.012692 C = 6850.807992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.016 3.984 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.245 4.245 8 H 0.061 0.939 9 N -0.573 5.573 10 C 0.140 3.860 11 C 0.048 3.952 12 O -0.327 6.327 13 C 0.250 3.750 14 H 0.042 0.958 15 C -0.140 4.140 16 C -0.119 4.119 17 C -0.159 4.159 18 C 0.072 3.928 19 O -0.407 6.407 20 C 0.160 3.840 21 C -0.132 4.132 22 C 0.478 3.522 23 O -0.529 6.529 24 O -0.525 6.525 25 H 0.253 0.747 26 H 0.040 0.960 27 H 0.112 0.888 28 H 0.027 0.973 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -5.835 8.258 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.183 4.183 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.079 0.921 9 N -0.292 5.292 10 C 0.014 3.986 11 C -0.031 4.031 12 O -0.245 6.245 13 C 0.154 3.846 14 H 0.059 0.941 15 C -0.178 4.178 16 C -0.156 4.156 17 C -0.196 4.196 18 C -0.005 4.005 19 O -0.328 6.328 20 C 0.032 3.968 21 C -0.173 4.173 22 C 0.322 3.678 23 O -0.418 6.418 24 O -0.336 6.336 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.570 -5.279 8.382 10.530 hybrid contribution 0.737 -0.016 -0.038 0.738 sum 4.306 -5.295 8.344 10.780 Atomic orbital electron populations 1.69954 1.05537 1.25621 1.52328 1.24977 0.94925 0.98507 0.99895 0.86314 0.79814 0.84109 0.76986 1.20215 1.22132 1.21441 1.18999 0.94314 0.85523 1.38600 0.92112 1.43862 1.48873 1.02214 1.34277 1.21108 0.90023 1.04402 0.83078 1.23396 0.90797 0.89210 0.99673 1.88342 1.54389 1.49050 1.32728 1.22954 0.86641 0.96026 0.78955 0.94079 1.21969 0.97722 1.00494 0.97612 1.21582 0.97727 1.02199 0.94141 1.22237 0.97671 1.00928 0.98812 1.22402 0.95849 0.96850 0.85356 1.87877 1.37423 1.92803 1.14739 1.20785 0.95980 0.88787 0.91201 1.22472 1.04438 0.89258 1.01106 1.24468 0.78267 0.88743 0.76331 1.90650 1.30698 1.58335 1.62153 1.84668 1.60705 1.41372 1.46835 0.93657 0.94146 0.87090 0.95434 0.94318 0.90260 0.89982 0.91884 0.91128 0.91049 0.90871 0.93587 0.89123 0.92844 0.93958 0.88630 0.87437 0.74577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 11.34 55.49 0.63 -24.38 16 2 C 0.02 0.45 4.91 -17.43 -0.09 0.36 16 3 Si 0.90 21.98 29.61 -169.99 -5.03 16.94 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.53 9.28 -15.06 -0.14 -6.67 16 8 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 9 N -0.57 -13.77 2.41 -173.24 -0.42 -14.19 16 10 C 0.14 3.24 5.63 -4.04 -0.02 3.21 16 11 C 0.05 1.00 6.14 37.16 0.23 1.23 16 12 O -0.33 -7.27 10.01 -59.02 -0.59 -7.86 16 13 C 0.25 4.47 3.21 37.21 0.12 4.59 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.14 -2.19 5.78 -26.59 -0.15 -2.34 16 16 C -0.12 -1.39 6.03 -26.55 -0.16 -1.55 16 17 C -0.16 -1.72 6.14 -26.59 -0.16 -1.89 16 18 C 0.07 0.89 6.84 37.20 0.25 1.14 16 19 O -0.41 -7.00 10.05 -59.02 -0.59 -7.59 16 20 C 0.16 3.35 4.98 -4.04 -0.02 3.33 16 21 C -0.13 -2.47 6.14 -27.88 -0.17 -2.64 16 22 C 0.48 8.16 8.33 36.01 0.30 8.46 16 23 O -0.53 -10.20 16.74 -18.75 -0.31 -10.51 16 24 O -0.52 -7.29 13.42 -39.25 -0.53 -7.82 16 25 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 27 H 0.11 2.95 5.34 -51.93 -0.28 2.68 16 28 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 1.16 8.00 -51.93 -0.42 0.74 16 39 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 40 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 42 H 0.40 3.56 9.10 45.56 0.41 3.98 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -31.57 348.53 -7.75 -39.31 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.14 Total: 3.61 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.01 Total: 7.23 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.21 Total: -38.57 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -2.02 Total: -33.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.57 -7.75 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.531 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds