Wall clock time and date at job start Fri Apr 10 2020 15:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46510 * 2 1 4 4 C 1.50696 * 109.46923 * 240.00282 * 2 1 3 5 5 C 1.38247 * 119.98658 * 120.00126 * 4 2 1 6 6 C 1.38216 * 120.01497 * 179.97438 * 5 4 2 7 7 C 1.38357 * 119.98603 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.01134 * 180.02562 * 7 6 5 9 9 C 1.38347 * 119.97107 * 0.28224 * 7 6 5 10 10 C 1.38218 * 119.98923 * 359.44450 * 9 7 6 11 11 S 1.81394 * 109.47231 * 119.99950 * 2 1 3 12 12 O 1.42108 * 108.57597 * 59.49213 * 11 2 1 13 13 O 1.42105 * 108.57961 * 190.51220 * 11 2 1 14 14 C 1.81399 * 101.92411 * 305.00315 * 11 2 1 15 15 C 1.50698 * 109.47216 * 180.02562 * 14 11 2 16 16 H 1.08007 * 119.99785 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00294 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99513 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00344 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47236 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47214 * 119.99903 * 19 17 15 22 22 H 1.48494 * 109.47261 * 239.99825 * 19 17 15 23 23 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47212 * 299.99612 * 1 2 3 25 25 H 1.09001 * 109.47822 * 60.00195 * 1 2 3 26 26 H 1.08003 * 119.99321 * 359.97438 * 5 4 2 27 27 H 1.08003 * 120.00776 * 179.97438 * 6 5 4 28 28 H 1.08000 * 120.00661 * 179.71600 * 9 7 6 29 29 H 1.07997 * 119.99399 * 180.27944 * 10 9 7 30 30 H 1.09001 * 109.46944 * 300.00200 * 14 11 2 31 31 H 1.09003 * 109.46907 * 59.99677 * 14 11 2 32 32 H 0.97003 * 119.99693 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.8271 -0.0382 -2.1403 6 6 3.2885 -0.6893 -3.2688 7 6 2.9544 -2.0139 -3.4881 8 17 3.5341 -2.8325 -4.9049 9 6 2.1537 -2.6841 -2.5805 10 6 1.6975 -2.0336 -1.4495 11 16 2.1347 -0.8551 1.4811 12 8 1.6409 -2.1875 1.4679 13 8 3.5342 -0.6350 1.5913 14 6 1.2998 0.0576 2.8079 15 6 1.6912 -0.5247 4.1416 16 1 2.3743 -1.3601 4.1865 17 6 1.1773 0.0088 5.3044 18 7 0.3459 1.0264 5.2496 19 14 1.6619 -0.7134 6.9575 20 1 2.6022 -1.8435 6.7475 21 1 2.3203 0.3325 7.7808 22 1 0.4482 -1.2038 7.6584 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8900 26 1 3.0875 0.9959 -1.9692 27 1 3.9090 -0.1639 -3.9797 28 1 1.8888 -3.7167 -2.7534 29 1 1.0762 -2.5581 -0.7387 30 1 1.5948 1.1062 2.7690 31 1 0.2202 -0.0210 2.6794 32 1 -0.0154 1.4020 6.0678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905267288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:05:51 Heat of formation + Delta-G solvation = -66.834914 kcal Electronic energy + Delta-G solvation = -18350.030275 eV Core-core repulsion = 15235.367357 eV Total energy + Delta-G solvation = -3114.662918 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.037 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.59610 -36.73333 -36.12485 -35.14403 -34.19663 -33.39045 -31.18613 -29.74416 -28.68898 -24.31222 -23.59346 -22.93694 -21.33415 -18.08279 -17.35732 -16.98778 -16.21642 -15.75082 -15.48563 -14.99531 -14.77697 -14.27891 -14.03882 -13.65618 -13.53321 -12.91307 -12.68815 -12.51971 -12.11040 -12.04604 -11.81040 -11.45951 -11.40267 -11.23233 -11.18443 -11.13778 -10.94523 -10.86231 -10.63571 -10.10945 -9.80341 -9.19151 -9.14534 -8.74562 -8.57122 -6.36959 -4.46323 0.65810 1.16126 1.19045 1.98164 3.18735 3.26079 3.33633 3.49965 3.69710 4.14062 4.26728 4.50135 4.73984 4.76437 4.78175 4.99156 5.17308 5.23702 5.29369 5.35572 5.56712 5.71908 5.81978 5.88570 6.08288 6.11026 6.17112 6.39734 6.59913 6.64779 6.67318 7.44673 7.71001 8.55642 9.21056 10.74872 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.041610 B = 0.003876 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.755284 B = 7222.946035 C = 7422.453324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.554 4.554 3 H 0.139 0.861 4 C -0.063 4.063 5 C -0.093 4.093 6 C -0.112 4.112 7 C -0.036 4.036 8 Cl -0.076 7.076 9 C -0.105 4.105 10 C -0.106 4.106 11 S 2.391 3.609 12 O -0.949 6.949 13 O -0.953 6.953 14 C -0.401 4.401 15 C -0.529 4.529 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.277 1.277 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -1.378 -15.926 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.657 4.657 3 H 0.157 0.843 4 C -0.064 4.064 5 C -0.111 4.111 6 C -0.130 4.130 7 C -0.063 4.063 8 Cl -0.047 7.047 9 C -0.124 4.124 10 C -0.125 4.125 11 S 2.576 3.424 12 O -0.946 6.946 13 O -0.950 6.950 14 C -0.536 4.536 15 C -0.568 4.568 16 H 0.090 0.910 17 C -0.131 4.131 18 N -0.517 5.517 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.225 -2.043 -15.983 16.159 hybrid contribution -0.233 0.482 0.522 0.748 sum 0.992 -1.560 -15.460 15.570 Atomic orbital electron populations 1.21699 0.89170 1.04145 1.04428 1.29460 1.06985 1.13235 1.16069 0.84327 1.19246 0.97952 0.94029 0.95191 1.21077 0.96691 1.00363 0.93018 1.21015 1.00780 0.92827 0.98407 1.20979 1.00938 0.93748 0.90639 1.98359 1.87792 1.79151 1.39411 1.21050 0.97321 1.00591 0.93407 1.21497 0.99641 0.93959 0.97380 1.09250 0.77115 0.78094 0.77970 1.93444 1.82044 1.33454 1.85700 1.93478 1.29544 1.86823 1.85171 1.27538 1.08400 1.08459 1.09200 1.20400 1.30163 1.17944 0.88330 0.90973 1.24925 0.94033 0.94430 0.99679 1.69952 1.29832 1.22930 1.29016 0.86299 0.78867 0.79508 0.82205 1.18933 1.20321 1.20308 0.90706 0.89764 0.91063 0.84617 0.84696 0.84461 0.82826 0.89674 0.89254 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.71 37.16 0.32 -1.46 16 2 C -0.55 -8.22 2.99 -27.89 -0.08 -8.31 16 3 H 0.14 1.72 7.88 -51.92 -0.41 1.32 16 4 C -0.06 -0.92 4.78 -104.62 -0.50 -1.42 16 5 C -0.09 -1.18 9.67 -39.59 -0.38 -1.56 16 6 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 7 C -0.04 -0.45 6.32 -39.50 -0.25 -0.70 16 8 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 9 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 10 C -0.11 -1.54 8.46 -39.59 -0.34 -1.88 16 11 S 2.39 48.50 4.10 -107.50 -0.44 48.06 16 12 O -0.95 -20.84 16.09 -57.83 -0.93 -21.77 16 13 O -0.95 -22.34 18.10 -57.83 -1.05 -23.39 16 14 C -0.40 -9.19 4.95 36.00 0.18 -9.01 16 15 C -0.53 -14.36 9.13 -34.44 -0.31 -14.67 16 16 H 0.07 1.96 7.71 -52.48 -0.40 1.56 16 17 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 18 N -0.88 -24.18 13.29 55.43 0.74 -23.45 16 19 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.07 0.96 7.39 -51.93 -0.38 0.57 16 24 H 0.08 1.08 6.39 -51.93 -0.33 0.75 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.14 1.41 7.95 -52.48 -0.42 0.99 16 27 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.15 2.26 6.18 -52.49 -0.32 1.93 16 30 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 31 H 0.09 1.95 6.77 -51.92 -0.35 1.60 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -32.03 302.50 -9.33 -41.36 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.45 Total: 1.77 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: -2.24 Total: -40.51 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.74 Total: -23.45 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.98 Total: -45.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.44 Total: 48.06 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.03 -9.33 -41.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.474 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds