Wall clock time and date at job start Fri Apr 10 2020 15:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46510 * 2 1 4 4 C 1.50696 * 109.46923 * 240.00282 * 2 1 3 5 5 C 1.38247 * 119.98658 * 120.00126 * 4 2 1 6 6 C 1.38216 * 120.01497 * 179.97438 * 5 4 2 7 7 C 1.38357 * 119.98603 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.01134 * 180.02562 * 7 6 5 9 9 C 1.38347 * 119.97107 * 0.28224 * 7 6 5 10 10 C 1.38218 * 119.98923 * 359.44450 * 9 7 6 11 11 S 1.81394 * 109.47231 * 119.99950 * 2 1 3 12 12 O 1.42108 * 108.57597 * 59.49213 * 11 2 1 13 13 O 1.42105 * 108.57961 * 190.51220 * 11 2 1 14 14 C 1.81399 * 101.92411 * 305.00315 * 11 2 1 15 15 C 1.50698 * 109.47216 * 180.02562 * 14 11 2 16 16 H 1.08007 * 119.99785 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00294 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99513 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00344 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47236 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47214 * 119.99903 * 19 17 15 22 22 H 1.48494 * 109.47261 * 239.99825 * 19 17 15 23 23 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47212 * 299.99612 * 1 2 3 25 25 H 1.09001 * 109.47822 * 60.00195 * 1 2 3 26 26 H 1.08003 * 119.99321 * 359.97438 * 5 4 2 27 27 H 1.08003 * 120.00776 * 179.97438 * 6 5 4 28 28 H 1.08000 * 120.00661 * 179.71600 * 9 7 6 29 29 H 1.07997 * 119.99399 * 180.27944 * 10 9 7 30 30 H 1.09001 * 109.46944 * 300.00200 * 14 11 2 31 31 H 1.09003 * 109.46907 * 59.99677 * 14 11 2 32 32 H 0.97003 * 119.99693 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.8271 -0.0382 -2.1403 6 6 3.2885 -0.6893 -3.2688 7 6 2.9544 -2.0139 -3.4881 8 17 3.5341 -2.8325 -4.9049 9 6 2.1537 -2.6841 -2.5805 10 6 1.6975 -2.0336 -1.4495 11 16 2.1347 -0.8551 1.4811 12 8 1.6409 -2.1875 1.4679 13 8 3.5342 -0.6350 1.5913 14 6 1.2998 0.0576 2.8079 15 6 1.6912 -0.5247 4.1416 16 1 2.3743 -1.3601 4.1865 17 6 1.1773 0.0088 5.3044 18 7 0.3459 1.0264 5.2496 19 14 1.6619 -0.7134 6.9575 20 1 2.6022 -1.8435 6.7475 21 1 2.3203 0.3325 7.7808 22 1 0.4482 -1.2038 7.6584 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8900 26 1 3.0875 0.9959 -1.9692 27 1 3.9090 -0.1639 -3.9797 28 1 1.8888 -3.7167 -2.7534 29 1 1.0762 -2.5581 -0.7387 30 1 1.5948 1.1062 2.7690 31 1 0.2202 -0.0210 2.6794 32 1 -0.0154 1.4020 6.0678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905267288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:05:51 Heat of formation + Delta-G solvation = -87.335782 kcal Electronic energy + Delta-G solvation = -18350.919259 eV Core-core repulsion = 15235.367357 eV Total energy + Delta-G solvation = -3115.551902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.037 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59717 -37.85968 -37.62133 -36.84410 -35.46660 -35.22410 -32.15406 -31.28615 -30.09938 -25.53406 -25.41959 -23.92421 -22.46265 -19.64203 -19.03318 -18.21376 -17.68979 -17.21430 -16.97178 -16.45076 -16.17958 -15.79718 -15.13607 -14.65060 -14.50558 -14.44679 -14.12740 -13.99580 -13.57831 -13.38620 -13.14365 -12.95108 -12.89618 -12.73035 -12.71926 -12.52126 -12.36367 -12.24472 -11.83574 -11.74069 -11.49859 -10.84981 -10.75690 -10.11570 -9.64144 -8.40272 -6.55837 -0.84597 0.06491 0.21764 1.05427 1.37213 1.38476 1.52223 2.12176 2.31353 2.49558 2.83376 2.93214 3.21300 3.37912 3.65941 3.87249 3.94509 4.12605 4.29577 4.37144 4.60173 4.69649 4.74809 4.78178 4.82685 4.93636 5.09505 5.14501 5.18549 5.37049 5.38001 5.68872 5.76811 6.53319 7.14463 8.72139 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.041610 B = 0.003876 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.755284 B = 7222.946035 C = 7422.453324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.515 4.515 3 H 0.170 0.830 4 C -0.088 4.088 5 C -0.092 4.092 6 C -0.109 4.109 7 C -0.040 4.040 8 Cl -0.062 7.062 9 C -0.112 4.112 10 C -0.124 4.124 11 S 2.397 3.603 12 O -0.976 6.976 13 O -0.993 6.993 14 C -0.421 4.421 15 C -0.563 4.563 16 H 0.056 0.944 17 C 0.028 3.972 18 N -0.906 5.906 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.266 1.266 22 H -0.265 1.265 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.152 0.848 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -0.698 -17.708 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.625 4.625 3 H 0.188 0.812 4 C -0.090 4.090 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.066 4.066 8 Cl -0.033 7.033 9 C -0.130 4.130 10 C -0.143 4.143 11 S 2.588 3.412 12 O -0.973 6.973 13 O -0.990 6.990 14 C -0.553 4.553 15 C -0.601 4.601 16 H 0.074 0.926 17 C -0.175 4.175 18 N -0.542 5.542 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.191 1.191 22 H -0.190 1.190 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.180 0.820 27 H 0.181 0.819 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.365 -1.384 -17.678 17.785 hybrid contribution -0.274 0.254 0.857 0.935 sum 1.092 -1.130 -16.821 16.895 Atomic orbital electron populations 1.21841 0.87597 1.04672 1.05951 1.29022 1.08172 1.13598 1.11749 0.81188 1.19327 0.99701 0.94375 0.95558 1.21409 0.95445 1.01626 0.92618 1.21367 1.00312 0.92607 0.98486 1.21165 1.00394 0.94225 0.90864 1.98367 1.87522 1.78971 1.38475 1.21230 0.97341 1.01404 0.93058 1.21545 1.00311 0.94395 0.98012 1.08622 0.75958 0.77645 0.78980 1.93403 1.82051 1.35185 1.86700 1.93419 1.31732 1.87252 1.86584 1.27605 1.09172 1.08827 1.09732 1.20766 1.30330 1.18053 0.90979 0.92561 1.25731 0.94000 0.94819 1.02981 1.70001 1.30433 1.23675 1.30140 0.85494 0.78968 0.78969 0.78467 1.19276 1.19079 1.18988 0.90870 0.89811 0.87841 0.81975 0.81919 0.83024 0.83933 0.89648 0.88801 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.71 71.98 0.63 -2.82 16 2 C -0.52 -14.39 2.99 29.85 0.09 -14.30 16 3 H 0.17 3.70 7.88 -2.39 -0.02 3.69 16 4 C -0.09 -2.39 4.78 -19.86 -0.09 -2.49 16 5 C -0.09 -2.04 9.67 22.27 0.22 -1.82 16 6 C -0.11 -2.20 9.83 22.29 0.22 -1.98 16 7 C -0.04 -0.87 6.32 22.32 0.14 -0.73 16 8 Cl -0.06 -1.20 28.96 -2.72 -0.08 -1.28 16 9 C -0.11 -2.70 9.83 22.29 0.22 -2.48 16 10 C -0.12 -3.47 8.46 22.27 0.19 -3.28 16 11 S 2.40 98.74 4.10 -56.49 -0.23 98.51 16 12 O -0.98 -44.18 16.09 -127.37 -2.05 -46.23 16 13 O -0.99 -47.48 18.10 -127.37 -2.31 -49.78 16 14 C -0.42 -19.78 4.95 71.24 0.35 -19.43 16 15 C -0.56 -31.52 9.13 25.60 0.23 -31.29 16 16 H 0.06 3.21 7.71 -2.91 -0.02 3.19 16 17 C 0.03 1.52 5.46 84.65 0.46 1.99 16 18 N -0.91 -50.23 13.29 21.45 0.28 -49.94 16 19 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 H 0.07 1.80 7.39 -2.39 -0.02 1.79 16 24 H 0.08 2.05 6.39 -2.39 -0.02 2.03 16 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.16 2.65 7.95 -2.91 -0.02 2.63 16 27 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.14 4.23 6.18 -2.91 -0.02 4.21 16 30 H 0.09 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.09 4.22 6.77 -2.39 -0.02 4.20 16 32 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -70.21 302.50 1.43 -68.78 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.13 Total: 13.80 kcal Atomic # 6 Polarization: -81.30 SS G_CDS: 2.65 Total: -78.65 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.28 Total: -49.94 kcal Atomic # 8 Polarization: -91.65 SS G_CDS: -4.35 Total: -96.01 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 98.74 SS G_CDS: -0.23 Total: 98.51 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -70.21 1.43 -68.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.557 kcal (2) G-P(sol) polarization free energy of solvation -70.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds