Wall clock time and date at job start Fri Apr 10 2020 15:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.70932 * 125.56862 * 2 1 4 4 C 1.70765 * 91.14613 * 180.17421 * 3 2 1 5 5 Cl 1.73607 * 124.72670 * 179.83419 * 4 3 2 6 6 N 1.28766 * 110.55289 * 359.83328 * 4 3 2 7 7 C 1.33658 * 115.71269 * 0.02562 * 6 4 3 8 8 C 1.47244 * 123.13775 * 179.97438 * 7 6 4 9 9 O 1.21628 * 119.99895 * 185.99619 * 8 7 6 10 10 N 1.34782 * 120.00041 * 5.99854 * 8 7 6 11 11 C 1.46499 * 119.99869 * 5.57038 * 10 8 7 12 12 C 1.46499 * 119.99939 * 185.57776 * 10 8 7 13 13 H 1.09000 * 109.47021 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46942 * 239.99516 * 12 10 8 15 15 C 1.50701 * 109.47028 * 119.99794 * 12 10 8 16 16 H 1.08000 * 120.00156 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99974 * 179.97438 * 15 12 10 18 18 N 1.31510 * 119.99651 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00109 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47187 * 59.99751 * 19 17 15 21 21 H 1.48493 * 109.47095 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46885 * 300.00097 * 19 17 15 23 23 H 1.08996 * 109.47098 * 270.12859 * 1 2 3 24 24 H 1.08997 * 109.47350 * 30.12816 * 1 2 3 25 25 H 1.09006 * 109.47422 * 150.12690 * 1 2 3 26 26 H 1.09000 * 109.47843 * 275.46450 * 11 10 8 27 27 H 1.08998 * 109.46892 * 155.45793 * 11 10 8 28 28 H 1.09004 * 109.46835 * 35.46648 * 11 10 8 29 29 H 1.08998 * 109.47030 * 60.00054 * 14 12 10 30 30 H 1.08998 * 109.46996 * 180.02562 * 14 12 10 31 31 H 1.08994 * 109.47070 * 300.00220 * 14 12 10 32 32 H 0.97001 * 120.00051 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5012 1.3904 0.0000 4 6 3.9099 0.4251 -0.0052 5 17 5.5322 1.0430 -0.0122 6 7 3.6012 -0.8250 -0.0031 7 6 2.2931 -1.0994 0.0019 8 6 1.7584 -2.4713 0.0043 9 8 0.5611 -2.6575 -0.1011 10 7 2.5957 -3.5207 0.1235 11 6 4.0216 -3.2954 0.3728 12 6 2.0798 -4.8866 0.0035 13 1 1.0058 -4.8546 -0.1793 14 6 2.3535 -5.6508 1.3004 15 6 2.7646 -5.5832 -1.1441 16 1 3.5093 -5.0606 -1.7261 17 6 2.4405 -6.8877 -1.4510 18 7 1.5341 -7.5242 -0.7419 19 14 3.2888 -7.7510 -2.8739 20 1 4.7522 -7.7938 -2.6252 21 1 2.7669 -9.1359 -2.9946 22 1 3.0221 -7.0094 -4.1325 23 1 -0.3633 0.0023 1.0276 24 1 -0.3634 0.8888 -0.5158 25 1 -0.3634 -0.8912 -0.5119 26 1 4.5327 -3.1196 -0.5738 27 1 4.4485 -4.1727 0.8588 28 1 4.1446 -2.4263 1.0190 29 1 1.8583 -5.1470 2.1304 30 1 1.9702 -6.6672 1.2110 31 1 3.4275 -5.6828 1.4835 32 1 1.3063 -8.4421 -0.9575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762888507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:02 Heat of formation + Delta-G solvation = 15.366807 kcal Electronic energy + Delta-G solvation = -18690.496690 eV Core-core repulsion = 15611.691057 eV Total energy + Delta-G solvation = -3078.805633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.044 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47705 -38.22749 -37.02419 -35.49113 -32.86810 -32.40073 -29.66258 -27.42571 -25.97632 -25.18077 -24.55091 -22.68076 -20.26209 -18.83323 -18.04056 -16.45977 -16.23603 -15.60840 -15.55558 -15.20021 -14.30693 -14.01019 -13.54309 -13.26244 -13.15911 -12.67600 -12.54331 -12.22591 -11.79712 -11.72929 -11.61954 -11.49953 -11.34635 -11.03268 -10.79685 -10.67439 -10.23410 -10.14551 -9.75131 -9.55105 -9.17298 -9.01292 -8.83669 -8.41448 -7.55380 -6.05719 -4.13470 0.36308 0.57095 1.37533 1.72024 2.05380 3.30376 3.34628 3.37250 3.79689 3.94067 4.39658 4.48936 4.85178 5.02831 5.25312 5.56862 5.60897 5.75394 6.10220 6.31267 6.37387 6.61250 6.80452 6.86708 7.06201 7.18907 7.47031 7.52094 7.73116 8.02465 8.19244 8.51194 8.80134 8.99016 9.52696 10.99541 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.004915 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.745955 B = 5695.745865 C = 6378.645929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.182 4.182 3 S 0.242 5.758 4 C 0.036 3.964 5 Cl 0.023 6.977 6 N -0.412 5.412 7 C 0.022 3.978 8 C 0.578 3.422 9 O -0.543 6.543 10 N -0.569 5.569 11 C 0.097 3.903 12 C 0.258 3.742 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.012 0.988 30 H 0.095 0.905 31 H 0.031 0.969 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 18.504 3.221 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.306 4.306 3 S 0.494 5.506 4 C -0.268 4.268 5 Cl 0.050 6.950 6 N -0.130 5.130 7 C -0.112 4.112 8 C 0.361 3.639 9 O -0.423 6.423 10 N -0.298 5.298 11 C -0.047 4.047 12 C 0.158 3.842 13 H 0.082 0.918 14 C -0.205 4.205 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.203 1.203 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.134 0.866 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.297 18.853 3.184 19.402 hybrid contribution 0.770 -1.367 -0.802 1.762 sum 4.066 17.486 2.381 18.110 Atomic orbital electron populations 1.20622 0.85060 1.05130 1.03956 1.25721 1.03873 0.95463 1.05510 1.82720 0.93863 1.07987 1.66033 1.27055 0.94417 0.93719 1.11633 1.98420 1.15690 1.83999 1.96870 1.67184 1.17257 1.15839 1.12703 1.20569 0.85887 0.96927 1.07775 1.16964 0.86067 0.82162 0.78683 1.90691 1.14368 1.84376 1.52851 1.48153 1.08168 1.07585 1.65879 1.21755 0.81432 1.00667 1.00833 1.19039 0.96953 0.74314 0.93920 0.91761 1.22094 0.98939 1.03642 0.95845 1.21284 1.23248 0.97551 1.14300 0.92246 1.24878 0.95051 0.97106 0.96669 1.69867 1.31415 1.11956 1.39416 0.86535 0.79701 0.78472 0.82568 1.20202 1.21149 1.20265 0.89891 0.91304 0.86570 0.93182 0.91580 0.91390 0.96896 0.88671 0.94986 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.72 36.00 0.35 -0.77 16 2 C -0.18 -2.59 6.39 -35.41 -0.23 -2.82 16 3 S 0.24 2.58 22.93 -107.50 -2.47 0.11 16 4 C 0.04 0.47 7.98 51.48 0.41 0.88 16 5 Cl 0.02 0.25 29.33 -51.86 -1.52 -1.27 16 6 N -0.41 -6.80 6.97 -9.45 -0.07 -6.87 16 7 C 0.02 0.40 6.43 -84.51 -0.54 -0.15 16 8 C 0.58 12.67 7.63 -12.60 -0.10 12.57 16 9 O -0.54 -12.94 13.43 5.25 0.07 -12.87 16 10 N -0.57 -13.05 2.75 -176.60 -0.49 -13.53 16 11 C 0.10 1.91 8.40 59.85 0.50 2.41 16 12 C 0.26 6.74 2.62 -69.08 -0.18 6.56 16 13 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 14 C -0.15 -3.60 8.96 37.16 0.33 -3.26 16 15 C -0.53 -14.54 8.37 -34.44 -0.29 -14.83 16 16 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 18 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 19 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.12 1.82 5.87 -51.93 -0.30 1.51 16 26 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.07 1.29 6.44 -51.93 -0.33 0.96 16 28 H 0.07 1.23 5.86 -51.93 -0.30 0.92 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 31 H 0.03 0.73 6.67 -51.93 -0.35 0.38 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 295.65 15.07 4.46 4.46 Total: -1.00 -30.30 295.65 -7.43 -37.73 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.19 Total: -1.81 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 0.17 Total: 2.31 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.08 Total: -45.03 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.47 Total: 0.11 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.30 -7.43 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762888507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.096 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds