Wall clock time and date at job start Fri Apr 10 2020 15:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.70932 * 125.56862 * 2 1 4 4 C 1.70765 * 91.14613 * 180.17421 * 3 2 1 5 5 Cl 1.73607 * 124.72670 * 179.83419 * 4 3 2 6 6 N 1.28766 * 110.55289 * 359.83328 * 4 3 2 7 7 C 1.33658 * 115.71269 * 0.02562 * 6 4 3 8 8 C 1.47244 * 123.13775 * 179.97438 * 7 6 4 9 9 O 1.21628 * 119.99895 * 185.99619 * 8 7 6 10 10 N 1.34782 * 120.00041 * 5.99854 * 8 7 6 11 11 C 1.46499 * 119.99869 * 5.57038 * 10 8 7 12 12 C 1.46499 * 119.99939 * 185.57776 * 10 8 7 13 13 H 1.09000 * 109.47021 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46942 * 239.99516 * 12 10 8 15 15 C 1.50701 * 109.47028 * 119.99794 * 12 10 8 16 16 H 1.08000 * 120.00156 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99974 * 179.97438 * 15 12 10 18 18 N 1.31510 * 119.99651 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00109 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47187 * 59.99751 * 19 17 15 21 21 H 1.48493 * 109.47095 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46885 * 300.00097 * 19 17 15 23 23 H 1.08996 * 109.47098 * 270.12859 * 1 2 3 24 24 H 1.08997 * 109.47350 * 30.12816 * 1 2 3 25 25 H 1.09006 * 109.47422 * 150.12690 * 1 2 3 26 26 H 1.09000 * 109.47843 * 275.46450 * 11 10 8 27 27 H 1.08998 * 109.46892 * 155.45793 * 11 10 8 28 28 H 1.09004 * 109.46835 * 35.46648 * 11 10 8 29 29 H 1.08998 * 109.47030 * 60.00054 * 14 12 10 30 30 H 1.08998 * 109.46996 * 180.02562 * 14 12 10 31 31 H 1.08994 * 109.47070 * 300.00220 * 14 12 10 32 32 H 0.97001 * 120.00051 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5012 1.3904 0.0000 4 6 3.9099 0.4251 -0.0052 5 17 5.5322 1.0430 -0.0122 6 7 3.6012 -0.8250 -0.0031 7 6 2.2931 -1.0994 0.0019 8 6 1.7584 -2.4713 0.0043 9 8 0.5611 -2.6575 -0.1011 10 7 2.5957 -3.5207 0.1235 11 6 4.0216 -3.2954 0.3728 12 6 2.0798 -4.8866 0.0035 13 1 1.0058 -4.8546 -0.1793 14 6 2.3535 -5.6508 1.3004 15 6 2.7646 -5.5832 -1.1441 16 1 3.5093 -5.0606 -1.7261 17 6 2.4405 -6.8877 -1.4510 18 7 1.5341 -7.5242 -0.7419 19 14 3.2888 -7.7510 -2.8739 20 1 4.7522 -7.7938 -2.6252 21 1 2.7669 -9.1359 -2.9946 22 1 3.0221 -7.0094 -4.1325 23 1 -0.3633 0.0023 1.0276 24 1 -0.3634 0.8888 -0.5158 25 1 -0.3634 -0.8912 -0.5119 26 1 4.5327 -3.1196 -0.5738 27 1 4.4485 -4.1727 0.8588 28 1 4.1446 -2.4263 1.0190 29 1 1.8583 -5.1470 2.1304 30 1 1.9702 -6.6672 1.2110 31 1 3.4275 -5.6828 1.4835 32 1 1.3063 -8.4421 -0.9575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762888507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:02 Heat of formation + Delta-G solvation = -3.509958 kcal Electronic energy + Delta-G solvation = -18691.315248 eV Core-core repulsion = 15611.691057 eV Total energy + Delta-G solvation = -3079.624191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.044 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.80678 -39.74978 -37.98719 -37.29739 -34.83305 -33.56536 -31.59475 -28.70400 -27.62629 -27.28467 -25.66750 -24.19235 -21.96179 -20.06386 -19.50487 -18.47520 -17.59462 -17.06672 -16.91472 -16.89297 -16.10088 -15.55277 -14.91665 -14.51427 -14.43696 -14.26707 -13.94538 -13.82738 -13.47587 -13.10986 -12.93403 -12.83308 -12.76569 -12.69282 -12.59604 -12.44805 -12.20830 -12.12402 -11.24401 -11.02169 -10.63684 -10.53974 -10.42678 -9.96214 -9.34915 -8.16562 -6.33227 -0.71799 -0.39675 0.30055 0.72666 0.76094 1.40250 1.42155 1.50171 2.21584 2.32053 2.46462 3.10754 3.20358 3.72618 3.84490 4.29836 4.49011 4.64899 4.73461 4.75793 4.81252 4.86433 5.02501 5.10550 5.24337 5.42652 5.57301 5.64611 5.96430 6.12556 6.13494 6.71386 6.73052 7.19886 7.40105 8.87657 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.004915 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.745955 B = 5695.745865 C = 6378.645929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.189 4.189 3 S 0.371 5.629 4 C 0.016 3.984 5 Cl 0.041 6.959 6 N -0.442 5.442 7 C -0.013 4.013 8 C 0.569 3.431 9 O -0.576 6.576 10 N -0.583 5.583 11 C 0.108 3.892 12 C 0.262 3.738 13 H 0.018 0.982 14 C -0.132 4.132 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.019 3.981 18 N -0.914 5.914 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 21.037 2.992 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.314 4.314 3 S 0.624 5.376 4 C -0.287 4.287 5 Cl 0.069 6.931 6 N -0.161 5.161 7 C -0.146 4.146 8 C 0.355 3.645 9 O -0.458 6.458 10 N -0.312 5.312 11 C -0.035 4.035 12 C 0.161 3.839 13 H 0.036 0.964 14 C -0.191 4.191 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.181 4.181 18 N -0.552 5.552 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.203 1.203 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.515 21.423 2.966 22.093 hybrid contribution 0.362 -1.947 -0.723 2.108 sum 4.876 19.475 2.243 20.201 Atomic orbital electron populations 1.20654 0.84245 1.05246 1.04715 1.26120 1.05135 0.96936 1.03172 1.82286 0.89554 1.03182 1.62551 1.27409 0.96440 0.93908 1.10952 1.98430 1.14616 1.83347 1.96743 1.67019 1.16821 1.17976 1.14273 1.19905 0.87253 0.95293 1.12158 1.17576 0.85675 0.83794 0.77439 1.90662 1.15728 1.85474 1.53970 1.48132 1.09535 1.06744 1.66783 1.21762 0.79557 1.01260 1.00891 1.18655 0.94347 0.76529 0.94366 0.96370 1.21884 0.99595 1.02129 0.95451 1.21483 1.23422 0.98112 1.15036 0.92822 1.25689 0.95583 0.97698 0.99093 1.69995 1.32308 1.12242 1.40688 0.85517 0.79087 0.77386 0.79077 1.19049 1.20353 1.20321 0.88727 0.87489 0.90151 0.93666 0.91861 0.89471 0.95996 0.90850 0.93747 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.72 71.24 0.69 -1.44 16 2 C -0.19 -5.04 6.39 24.97 0.16 -4.88 16 3 S 0.37 6.45 22.93 -56.49 -1.30 5.16 16 4 C 0.02 0.39 7.98 130.69 1.04 1.43 16 5 Cl 0.04 0.80 29.33 -2.72 -0.08 0.72 16 6 N -0.44 -14.12 6.97 -183.80 -1.28 -15.40 16 7 C -0.01 -0.44 6.43 40.52 0.26 -0.18 16 8 C 0.57 25.90 7.63 86.61 0.66 26.56 16 9 O -0.58 -29.04 13.43 -4.12 -0.06 -29.10 16 10 N -0.58 -27.69 2.75 -830.87 -2.29 -29.98 16 11 C 0.11 4.31 8.40 127.77 1.07 5.38 16 12 C 0.26 14.37 2.62 44.25 0.12 14.48 16 13 H 0.02 1.16 6.91 -2.39 -0.02 1.14 16 14 C -0.13 -6.68 8.96 71.98 0.64 -6.03 16 15 C -0.54 -30.90 8.37 25.60 0.21 -30.69 16 16 H 0.05 3.05 7.65 -2.91 -0.02 3.02 16 17 C 0.02 1.09 5.30 84.66 0.45 1.54 16 18 N -0.91 -53.27 11.32 21.45 0.24 -53.03 16 19 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 2.58 5.87 -2.38 -0.01 2.56 16 26 H 0.04 1.81 8.07 -2.39 -0.02 1.80 16 27 H 0.06 2.49 6.44 -2.39 -0.02 2.48 16 28 H 0.09 3.13 5.86 -2.38 -0.01 3.12 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 4.03 6.07 -2.39 -0.01 4.02 16 31 H 0.04 2.07 6.67 -2.39 -0.02 2.06 16 32 H 0.27 14.67 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -68.79 295.65 3.75 -65.05 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.16 Total: 4.15 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.31 Total: 6.17 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.32 Total: -98.40 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.06 Total: -29.10 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -1.30 Total: 5.16 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -0.08 Total: 0.72 kcal Total: -68.79 3.75 -65.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762888507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.538 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds