Wall clock time and date at job start Fri Apr 10 2020 15:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32697 * 123.45155 * 2 1 4 4 S 1.75489 * 110.62817 * 180.02562 * 3 2 1 5 5 C 1.70448 * 92.46760 * 359.97438 * 4 3 2 6 6 Cl 1.73596 * 124.60462 * 180.02562 * 5 4 3 7 7 C 1.36221 * 110.78865 * 0.02562 * 5 4 3 8 8 C 1.47044 * 123.49016 * 180.02562 * 7 5 4 9 9 O 1.21656 * 120.00161 * 89.97950 * 8 7 5 10 10 N 1.34779 * 120.00202 * 269.97183 * 8 7 5 11 11 C 1.46500 * 120.00040 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46723 * 180.02562 * 11 10 8 13 13 N 1.46500 * 109.46723 * 180.02562 * 12 11 10 14 14 C 1.36937 * 120.00055 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99731 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00471 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00570 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46861 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47448 * 119.99791 * 18 16 14 21 21 H 1.48497 * 109.47364 * 240.00563 * 18 16 14 22 22 H 1.09008 * 109.47465 * 269.98509 * 1 2 3 23 23 H 1.09000 * 109.46976 * 29.98059 * 1 2 3 24 24 H 1.08996 * 109.47525 * 149.98031 * 1 2 3 25 25 H 1.08000 * 124.68158 * 0.05391 * 3 2 1 26 26 H 0.97000 * 119.99178 * 0.02562 * 10 8 7 27 27 H 1.09001 * 109.46932 * 300.00184 * 11 10 8 28 28 H 1.08996 * 109.47119 * 59.99817 * 11 10 8 29 29 H 1.08996 * 109.46840 * 299.99452 * 12 11 10 30 30 H 1.08992 * 109.47326 * 60.00019 * 12 11 10 31 31 H 0.97004 * 119.99991 * 359.97438 * 13 12 11 32 32 H 0.96995 * 120.00642 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2384 1.1072 0.0000 4 16 3.9496 0.7177 -0.0007 5 6 3.6432 -0.9591 -0.0003 6 17 4.8715 -2.1857 0.0000 7 6 2.3035 -1.2057 -0.0002 8 6 1.7276 -2.5587 0.0008 9 8 1.4896 -3.1178 1.0547 10 7 1.4632 -3.1794 -1.1660 11 6 0.8889 -4.5271 -1.1650 12 6 0.6893 -4.9974 -2.6073 13 7 0.1144 -6.3449 -2.6063 14 6 -0.1543 -6.9755 -3.7917 15 1 0.0579 -6.4796 -4.7274 16 6 -0.6985 -8.2525 -3.7909 17 7 -0.9567 -8.8571 -2.6506 18 14 -1.0645 -9.1130 -5.4080 19 1 -0.6866 -8.2258 -6.5374 20 1 -0.2837 -10.3738 -5.4856 21 1 -2.5146 -9.4230 -5.4867 22 1 -0.3634 -0.0003 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8897 -0.5141 25 1 1.8362 2.1095 0.0008 26 1 1.6532 -2.7336 -2.0063 27 1 1.5653 -5.2099 -0.6509 28 1 -0.0722 -4.5122 -0.6510 29 1 0.0130 -4.3147 -3.1217 30 1 1.6505 -5.0124 -3.1208 31 1 -0.0758 -6.7904 -1.7659 32 1 -1.3373 -9.7492 -2.6499 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149166562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:12 Heat of formation + Delta-G solvation = -28.012424 kcal Electronic energy + Delta-G solvation = -17606.809323 eV Core-core repulsion = 14526.122625 eV Total energy + Delta-G solvation = -3080.686698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.044 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15958 -38.65394 -37.79875 -37.30766 -35.54357 -33.20695 -32.01331 -29.84558 -28.49586 -26.07282 -24.82581 -23.13163 -22.17706 -20.23656 -19.31457 -19.08048 -18.10055 -17.27111 -16.61062 -16.53882 -15.90792 -15.26882 -15.21539 -15.02454 -14.91296 -14.75954 -14.40648 -13.95405 -13.90883 -13.13851 -13.06251 -12.99633 -12.71015 -12.55753 -12.35749 -12.21093 -12.05581 -12.00661 -11.86518 -11.23572 -11.01824 -10.28381 -9.84067 -9.40441 -9.08013 -7.97552 -5.29300 -0.39724 -0.00793 0.63992 1.04554 1.11957 1.38286 1.48505 1.49861 1.60013 2.08005 2.57430 3.36877 3.60652 3.79782 3.96279 4.07330 4.15298 4.17592 4.44594 4.53396 4.55239 4.74376 4.84082 4.95830 5.09191 5.17688 5.25338 5.31745 5.48066 6.23069 6.33814 7.00618 7.29460 8.00236 8.23843 9.26308 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.003210 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.101727 B = 8721.794437 C = 9091.122439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.081 4.081 3 C -0.210 4.210 4 S 0.281 5.719 5 C -0.173 4.173 6 Cl -0.013 7.013 7 C -0.152 4.152 8 C 0.583 3.417 9 O -0.571 6.571 10 N -0.698 5.698 11 C 0.128 3.872 12 C 0.150 3.850 13 N -0.747 5.747 14 C -0.248 4.248 15 H 0.083 0.917 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.979 3.021 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.292 1.292 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.053 0.947 25 H 0.214 0.786 26 H 0.416 0.584 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.374 0.626 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.810 26.893 3.835 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.092 4.092 3 C -0.345 4.345 4 S 0.548 5.452 5 C -0.318 4.318 6 Cl 0.016 6.984 7 C -0.172 4.172 8 C 0.367 3.633 9 O -0.451 6.451 10 N -0.350 5.350 11 C 0.003 3.997 12 C 0.024 3.976 13 N -0.390 5.390 14 C -0.379 4.379 15 H 0.101 0.899 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.808 3.192 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.220 1.220 22 H 0.093 0.907 23 H 0.124 0.876 24 H 0.072 0.928 25 H 0.231 0.769 26 H 0.252 0.748 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.206 0.794 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.107 27.255 4.365 29.753 hybrid contribution -1.361 -2.257 -0.529 2.688 sum 9.746 24.998 3.836 27.103 Atomic orbital electron populations 1.20585 0.87763 1.04009 1.03268 1.19747 0.97890 0.88913 1.02638 1.25815 0.95759 1.03813 1.09121 1.82940 1.04926 0.89021 1.68299 1.25413 0.92881 0.99893 1.13650 1.98406 1.50872 1.52254 1.96870 1.20153 0.92080 0.94480 1.10517 1.17846 0.76945 0.84987 0.83511 1.90821 1.54018 1.67524 1.32710 1.45734 1.63305 1.17075 1.08846 1.21229 0.98060 0.82558 0.97811 1.20822 0.96950 0.86625 0.93244 1.42420 1.76093 1.14701 1.05784 1.19683 1.33671 0.97606 0.86958 0.89900 1.25669 1.02412 0.98381 1.00373 1.69843 1.51092 1.14894 1.26255 0.84994 0.76933 0.78133 0.79178 1.18590 1.22084 1.21953 0.90654 0.87633 0.92804 0.76878 0.74759 0.92784 0.92145 0.94187 0.94670 0.79409 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.96 71.24 0.71 -0.82 16 2 C -0.08 -1.44 6.01 -19.44 -0.12 -1.56 16 3 C -0.21 -2.38 10.90 66.65 0.73 -1.66 16 4 S 0.28 3.61 23.02 -56.49 -1.30 2.31 16 5 C -0.17 -3.72 6.87 67.35 0.46 -3.26 16 6 Cl -0.01 -0.30 28.80 -2.72 -0.08 -0.38 16 7 C -0.15 -3.68 5.73 -19.84 -0.11 -3.80 16 8 C 0.58 18.31 6.28 86.55 0.54 18.86 16 9 O -0.57 -23.06 17.11 -4.21 -0.07 -23.14 16 10 N -0.70 -20.24 5.55 -466.72 -2.59 -22.83 16 11 C 0.13 4.55 5.79 86.38 0.50 5.05 16 12 C 0.15 5.85 6.37 86.38 0.55 6.40 16 13 N -0.75 -38.35 5.60 -343.46 -1.92 -40.27 16 14 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 16 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 17 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 18 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.11 0.97 8.13 -2.39 -0.02 0.95 16 24 H 0.05 1.04 7.69 -2.39 -0.02 1.02 16 25 H 0.21 0.78 8.06 -2.91 -0.02 0.75 16 26 H 0.42 9.62 8.46 -92.71 -0.78 8.84 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 32 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -72.62 314.27 0.59 -72.03 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.33 Total: 21.87 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.57 Total: 2.37 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -4.23 Total: -122.95 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.14 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.30 Total: 2.31 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -72.62 0.59 -72.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149166562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.020 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds