Wall clock time and date at job start Fri Apr 10 2020 15:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46919 * 2 1 4 4 C 1.38170 * 119.97921 * 100.00111 * 3 2 1 5 5 C 1.38691 * 119.95655 * 180.02562 * 4 3 2 6 6 O 1.35924 * 120.04105 * 179.97438 * 5 4 3 7 7 C 1.42905 * 117.00030 * 176.30879 * 6 5 4 8 8 H 1.08999 * 109.46976 * 27.16530 * 7 6 5 9 9 C 1.50702 * 109.47414 * 147.16214 * 7 6 5 10 10 H 1.08000 * 119.99199 * 0.02562 * 9 7 6 11 11 C 1.37873 * 120.00016 * 179.97438 * 9 7 6 12 12 N 1.31513 * 120.00127 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99769 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47032 * 90.00059 * 13 11 9 15 15 H 1.48500 * 109.46873 * 209.99996 * 13 11 9 16 16 H 1.48496 * 109.46907 * 330.00123 * 13 11 9 17 17 C 1.52997 * 109.47092 * 267.16474 * 7 6 5 18 18 Cl 1.80305 * 109.47300 * 64.99704 * 17 7 6 19 19 C 1.38744 * 119.91650 * 0.25036 * 5 4 3 20 20 C 1.38118 * 119.95480 * 359.49438 * 19 5 4 21 21 C 1.38344 * 119.97819 * 280.01797 * 3 2 1 22 22 Cl 1.73597 * 119.95806 * 359.95931 * 21 3 2 23 23 H 1.09005 * 109.47222 * 60.00258 * 1 2 3 24 24 H 1.09003 * 109.47173 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47422 * 300.00374 * 1 2 3 26 26 H 1.09002 * 109.47422 * 239.99626 * 2 1 3 27 27 H 1.09000 * 109.46811 * 119.99544 * 2 1 3 28 28 H 1.07997 * 120.01955 * 359.97438 * 4 3 2 29 29 H 0.97004 * 120.00021 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.47409 * 184.99619 * 17 7 6 31 31 H 1.09000 * 109.47474 * 304.99880 * 17 7 6 32 32 H 1.08002 * 120.02327 * 179.72666 * 19 5 4 33 33 H 1.08006 * 119.98224 * 180.23345 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4583 2.0025 1.1787 5 6 2.9200 3.3104 1.1782 6 8 3.3391 3.8844 2.3368 7 6 3.8773 5.2053 2.2488 8 1 3.4446 5.7174 1.3893 9 6 3.5467 5.9674 3.5062 10 1 2.9825 5.4904 4.2939 11 6 3.9656 7.2729 3.6513 12 7 4.6531 7.8534 2.6922 13 14 3.5564 8.2172 5.2103 14 1 4.6395 8.0203 6.2069 15 1 3.4308 9.6628 4.8948 16 1 2.2737 7.7190 5.7684 17 6 5.3964 5.1271 2.0842 18 17 5.7908 4.3453 0.5081 19 6 2.9482 4.0338 -0.0053 20 6 2.5264 3.4472 -1.1824 21 6 2.0661 2.1421 -1.1801 22 17 1.5308 1.4089 -2.6598 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.4311 1.4394 2.0998 29 1 4.9481 8.7718 2.7945 30 1 5.8165 6.1327 2.1061 31 1 5.8202 4.5385 2.8979 32 1 3.3032 5.0538 -0.0069 33 1 2.5516 4.0087 -2.1047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225316702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:33 Heat of formation + Delta-G solvation = -58.932444 kcal Electronic energy + Delta-G solvation = -18443.364720 eV Core-core repulsion = 15327.000773 eV Total energy + Delta-G solvation = -3116.363948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.042 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15421 -39.04876 -37.16492 -36.58111 -35.41653 -34.73825 -31.98272 -30.53646 -29.80029 -27.28731 -25.19706 -23.68047 -23.38251 -21.27487 -19.13692 -18.54676 -17.42094 -17.15307 -16.51601 -16.14282 -15.75239 -15.31776 -14.80399 -14.66097 -14.41785 -14.25155 -13.86043 -13.59730 -13.44861 -13.12188 -12.98030 -12.88619 -12.73336 -12.47300 -12.31828 -12.05942 -11.96412 -11.74556 -11.57847 -11.35551 -11.14520 -10.84375 -10.57049 -9.79796 -8.85211 -8.38104 -6.53837 0.31896 0.36025 1.25828 1.40148 1.43920 1.54390 1.60029 2.26138 2.64165 2.72659 2.97260 3.76816 3.83984 4.11324 4.20690 4.37228 4.38028 4.41793 4.50871 4.55270 4.76373 4.84422 5.00342 5.03001 5.09749 5.18396 5.27860 5.40191 5.43737 5.48990 5.56290 5.74203 5.83581 6.45786 6.78693 7.18799 8.68456 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.004675 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.488932 B = 5988.209456 C = 6492.016006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.036 4.036 4 C -0.160 4.160 5 C 0.138 3.862 6 O -0.324 6.324 7 C 0.211 3.789 8 H 0.034 0.966 9 C -0.549 4.549 10 H 0.067 0.933 11 C 0.028 3.972 12 N -0.908 5.908 13 Si 0.976 3.024 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.269 1.269 17 C -0.027 4.027 18 Cl -0.221 7.221 19 C -0.197 4.197 20 C -0.073 4.073 21 C -0.086 4.086 22 Cl -0.066 7.066 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.276 0.724 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 -10.811 -5.771 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.037 4.037 4 C -0.179 4.179 5 C 0.091 3.909 6 O -0.238 6.238 7 C 0.156 3.844 8 H 0.052 0.948 9 C -0.586 4.586 10 H 0.085 0.915 11 C -0.173 4.173 12 N -0.546 5.546 13 Si 0.800 3.200 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.194 1.194 17 C -0.090 4.090 18 Cl -0.195 7.195 19 C -0.216 4.216 20 C -0.091 4.091 21 C -0.112 4.112 22 Cl -0.037 7.037 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.441 -10.824 -5.869 13.090 hybrid contribution 0.231 1.051 0.346 1.130 sum -4.210 -9.773 -5.523 11.989 Atomic orbital electron populations 1.21717 0.93545 1.02880 1.01940 1.20633 0.97159 0.90008 1.04165 1.19698 0.96476 0.97432 0.90052 1.20377 1.05655 0.92665 0.99188 1.19457 0.92541 0.93013 0.85863 1.86092 1.75144 1.33190 1.29368 1.20316 0.88366 0.77130 0.98634 0.94818 1.21234 1.37166 0.97382 1.02818 0.91490 1.25695 0.93864 0.97444 1.00307 1.69876 1.36487 1.14491 1.33701 0.85258 0.79018 0.77355 0.78368 1.19349 1.20174 1.19379 1.25428 0.99977 1.00861 0.82736 1.98640 1.95382 1.84914 1.40599 1.21320 1.06282 1.01398 0.92614 1.20880 0.96619 0.93447 0.98188 1.20575 1.08424 0.94515 0.87735 1.98306 1.88945 1.82778 1.33698 0.92878 0.90241 0.93029 0.89739 0.89441 0.83904 0.91445 0.86424 0.90583 0.85672 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.84 71.98 0.71 -2.05 16 2 C -0.08 -1.78 5.52 29.85 0.16 -1.61 16 3 C -0.04 -1.03 5.14 -19.85 -0.10 -1.13 16 4 C -0.16 -5.36 9.61 22.36 0.21 -5.15 16 5 C 0.14 5.51 5.95 22.50 0.13 5.64 16 6 O -0.32 -14.91 9.73 -92.69 -0.90 -15.82 16 7 C 0.21 10.24 2.19 29.85 0.07 10.31 16 8 H 0.03 1.76 5.38 -2.39 -0.01 1.75 16 9 C -0.55 -28.52 8.89 25.60 0.23 -28.30 16 10 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 11 C 0.03 1.42 5.29 84.65 0.45 1.87 16 12 N -0.91 -46.75 11.29 21.45 0.24 -46.50 16 13 Si 0.98 39.90 29.54 68.60 2.03 41.93 16 14 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 15 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 C -0.03 -1.23 6.17 71.98 0.44 -0.79 16 18 Cl -0.22 -9.00 25.63 -2.72 -0.07 -9.07 16 19 C -0.20 -7.57 7.05 22.36 0.16 -7.42 16 20 C -0.07 -2.37 9.82 22.28 0.22 -2.15 16 21 C -0.09 -2.54 6.31 22.33 0.14 -2.40 16 22 Cl -0.07 -1.62 26.61 -2.72 -0.07 -1.70 16 23 H 0.05 1.09 7.26 -2.38 -0.02 1.07 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.70 7.35 -2.39 -0.02 1.68 16 27 H 0.09 1.66 8.00 -2.39 -0.02 1.64 16 28 H 0.14 4.33 8.04 -2.91 -0.02 4.31 16 29 H 0.28 13.38 8.31 -92.70 -0.77 12.61 16 30 H 0.12 5.75 5.95 -2.39 -0.01 5.74 16 31 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.13 5.27 5.13 -2.91 -0.01 5.26 16 33 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -52.81 301.62 5.17 -47.64 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.13 Total: 16.69 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 2.82 Total: -33.17 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.24 Total: -46.50 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.90 Total: -15.82 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 17 Polarization: -10.62 SS G_CDS: -0.14 Total: -10.76 kcal Total: -52.81 5.17 -47.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225316702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.293 kcal (2) G-P(sol) polarization free energy of solvation -52.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds