Wall clock time and date at job start Fri Apr 10 2020 15:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76205 * 99.99990 * 2 1 4 4 C 1.39740 * 120.50541 * 180.02562 * 3 2 1 5 5 C 1.38033 * 118.45101 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.35899 * 180.02562 * 5 4 3 7 7 N 1.32571 * 119.27694 * 0.02562 * 5 4 3 8 8 C 1.32306 * 120.96443 * 359.97438 * 7 5 4 9 9 O 1.35454 * 119.14886 * 179.97438 * 8 7 5 10 10 C 1.42899 * 116.99680 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47206 * 30.00603 * 10 9 8 12 12 C 1.50702 * 109.46876 * 150.00312 * 10 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.53000 * 109.47309 * 270.00426 * 10 9 8 21 21 Cl 1.80292 * 109.47199 * 65.00174 * 20 10 9 22 22 N 1.32276 * 121.69656 * 0.26932 * 8 7 5 23 23 H 1.09002 * 109.46741 * 60.00198 * 1 2 3 24 24 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47359 * 300.00510 * 1 2 3 26 26 H 1.07999 * 120.77170 * 0.03668 * 4 3 2 27 27 H 1.09001 * 109.47304 * 269.97633 * 6 5 4 28 28 H 1.09001 * 109.47162 * 29.97969 * 6 5 4 29 29 H 1.09003 * 109.46389 * 149.97835 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 31 31 H 1.09005 * 109.46994 * 184.99833 * 20 10 9 32 32 H 1.08996 * 109.47227 * 304.99688 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4248 2.2248 -0.0005 5 6 3.6156 3.5919 0.0000 6 6 5.0088 4.1665 -0.0011 7 7 2.5600 4.3938 0.0016 8 6 1.3316 3.9022 0.0021 9 8 0.2795 4.7553 0.0042 10 6 -1.0263 4.1749 0.0052 11 1 -0.9962 3.2135 0.5182 12 6 -1.9842 5.0946 0.7176 13 1 -1.6312 6.0291 1.1282 14 6 -3.3126 4.7460 0.8399 15 7 -3.7425 3.6082 0.3396 16 14 -4.5015 5.8895 1.7162 17 1 -5.0962 6.8320 0.7347 18 1 -5.5800 5.0903 2.3511 19 1 -3.7735 6.6556 2.7595 20 6 -1.4940 3.9690 -1.4369 21 17 -0.4335 2.7557 -2.2454 22 7 1.1046 2.5990 0.0063 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.2674 1.5492 -0.0016 27 1 5.3456 4.3048 1.0263 28 1 5.6836 3.4824 -0.5157 29 1 5.0047 5.1279 -0.5148 30 1 -4.6770 3.3627 0.4260 31 1 -2.5231 3.6096 -1.4373 32 1 -1.4395 4.9153 -1.9751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229079661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:35 Heat of formation + Delta-G solvation = -2.808835 kcal Electronic energy + Delta-G solvation = -18882.148938 eV Core-core repulsion = 15802.555150 eV Total energy + Delta-G solvation = -3079.593788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.044 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56658 -37.76646 -34.84192 -33.95576 -33.53105 -31.58987 -29.28501 -28.71165 -28.11868 -25.37829 -23.71297 -23.09712 -20.81475 -18.24272 -17.41934 -16.50796 -16.22845 -15.49549 -15.22262 -14.86920 -13.89036 -13.73822 -13.61975 -13.40339 -13.25452 -12.91127 -12.51642 -12.45880 -12.03414 -11.92674 -11.75640 -11.22040 -11.10989 -10.89024 -10.75668 -10.49517 -10.41602 -10.15548 -9.84333 -9.44103 -9.34510 -8.83642 -8.54846 -8.26408 -7.53889 -6.46113 -4.53911 1.34947 1.51217 1.69574 2.37808 3.11393 3.18296 3.21759 3.37196 3.47324 4.15465 4.20273 4.59904 4.89621 5.10347 5.14509 5.41660 5.46554 5.52219 5.60035 5.66667 5.84432 6.01856 6.20401 6.27096 6.32663 6.48229 6.85699 7.15316 7.30030 7.47304 7.68901 8.07550 8.48921 8.76786 9.13473 10.60953 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.006250 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.455872 B = 4478.746245 C = 5148.790078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.074 6.074 3 C 0.201 3.799 4 C -0.268 4.268 5 C 0.214 3.786 6 C -0.100 4.100 7 N -0.544 5.544 8 C 0.536 3.464 9 O -0.283 6.283 10 C 0.217 3.783 11 H 0.067 0.933 12 C -0.525 4.525 13 H 0.077 0.923 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.918 3.082 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.032 4.032 21 Cl -0.234 7.234 22 N -0.542 5.542 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.142 0.858 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.272 0.728 31 H 0.135 0.865 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.215 -5.270 -1.226 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.163 5.837 3 C -0.058 4.058 4 C -0.298 4.298 5 C 0.067 3.933 6 C -0.158 4.158 7 N -0.274 5.274 8 C 0.232 3.768 9 O -0.183 6.183 10 C 0.162 3.838 11 H 0.085 0.915 12 C -0.563 4.563 13 H 0.095 0.905 14 C -0.137 4.137 15 N -0.523 5.523 16 Si 0.744 3.256 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.095 4.095 21 Cl -0.209 7.209 22 N -0.276 5.276 23 H 0.121 0.879 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.160 0.840 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.858 -5.529 -1.297 11.377 hybrid contribution -1.064 0.777 0.244 1.340 sum 8.793 -4.752 -1.053 10.051 Atomic orbital electron populations 1.23564 0.92268 1.05636 1.08701 1.85342 1.09757 0.97948 1.90671 1.23114 0.91211 0.98587 0.92864 1.21871 0.96931 0.96854 1.14163 1.21235 0.94533 0.89064 0.88431 1.20722 0.89472 1.02111 1.03446 1.67462 0.97230 1.40274 1.22390 1.20821 0.86991 0.83801 0.85212 1.86197 1.14858 1.32943 1.84288 1.20613 0.74026 0.97283 0.91872 0.91499 1.21022 0.92332 1.06422 1.36488 0.90529 1.24947 0.97900 0.95680 0.95223 1.69808 1.16900 1.21304 1.44311 0.86152 0.79722 0.80013 0.79707 1.20088 1.20711 1.19374 1.25661 0.98167 0.90731 0.94945 1.98627 1.73341 1.65240 1.83662 1.68635 1.33938 1.03169 1.21825 0.87924 0.88649 0.88906 0.84041 0.89836 0.90268 0.89974 0.91803 0.84700 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.68 101.05 0.98 -1.09 16 2 S -0.07 -1.11 22.74 -107.50 -2.44 -3.55 16 3 C 0.20 3.59 7.01 -16.48 -0.12 3.48 16 4 C -0.27 -4.17 9.61 -39.10 -0.38 -4.54 16 5 C 0.21 3.46 6.81 -82.35 -0.56 2.90 16 6 C -0.10 -1.09 10.21 36.01 0.37 -0.72 16 7 N -0.54 -11.10 10.40 -11.04 -0.11 -11.22 16 8 C 0.54 12.05 7.64 -91.30 -0.70 11.35 16 9 O -0.28 -7.04 9.81 -18.05 -0.18 -7.21 16 10 C 0.22 5.46 2.25 -27.88 -0.06 5.39 16 11 H 0.07 1.79 6.95 -51.93 -0.36 1.43 16 12 C -0.52 -13.88 8.89 -34.44 -0.31 -14.19 16 13 H 0.08 2.05 7.81 -52.49 -0.41 1.64 16 14 C 0.07 1.68 5.29 -17.82 -0.09 1.59 16 15 N -0.89 -22.91 11.28 55.43 0.63 -22.29 16 16 Si 0.92 19.95 29.54 -169.99 -5.02 14.93 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.03 -0.75 6.17 37.16 0.23 -0.53 16 21 Cl -0.23 -4.98 24.47 -51.86 -1.27 -6.25 16 22 N -0.54 -11.31 5.22 -13.51 -0.07 -11.38 16 23 H 0.10 1.81 6.64 -51.91 -0.34 1.47 16 24 H 0.09 1.20 8.14 -51.92 -0.42 0.77 16 25 H 0.09 1.59 8.13 -51.92 -0.42 1.17 16 26 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.14 3.33 5.94 -51.93 -0.31 3.02 16 32 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -27.91 300.85 -8.09 -36.00 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.51 Total: 2.79 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.64 Total: 3.64 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.44 Total: -44.88 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.18 Total: -7.21 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.44 Total: -3.55 kcal Atomic # 17 Polarization: -4.98 SS G_CDS: -1.27 Total: -6.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.91 -8.09 -36.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229079661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.190 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds