Wall clock time and date at job start Fri Apr 10 2020 15:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76205 * 99.99990 * 2 1 4 4 C 1.39740 * 120.50541 * 180.02562 * 3 2 1 5 5 C 1.38033 * 118.45101 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.35899 * 180.02562 * 5 4 3 7 7 N 1.32571 * 119.27694 * 0.02562 * 5 4 3 8 8 C 1.32306 * 120.96443 * 359.97438 * 7 5 4 9 9 O 1.35454 * 119.14886 * 179.97438 * 8 7 5 10 10 C 1.42899 * 116.99680 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47206 * 30.00603 * 10 9 8 12 12 C 1.50702 * 109.46876 * 150.00312 * 10 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.53000 * 109.47309 * 270.00426 * 10 9 8 21 21 Cl 1.80292 * 109.47199 * 65.00174 * 20 10 9 22 22 N 1.32276 * 121.69656 * 0.26932 * 8 7 5 23 23 H 1.09002 * 109.46741 * 60.00198 * 1 2 3 24 24 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47359 * 300.00510 * 1 2 3 26 26 H 1.07999 * 120.77170 * 0.03668 * 4 3 2 27 27 H 1.09001 * 109.47304 * 269.97633 * 6 5 4 28 28 H 1.09001 * 109.47162 * 29.97969 * 6 5 4 29 29 H 1.09003 * 109.46389 * 149.97835 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 31 31 H 1.09005 * 109.46994 * 184.99833 * 20 10 9 32 32 H 1.08996 * 109.47227 * 304.99688 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4248 2.2248 -0.0005 5 6 3.6156 3.5919 0.0000 6 6 5.0088 4.1665 -0.0011 7 7 2.5600 4.3938 0.0016 8 6 1.3316 3.9022 0.0021 9 8 0.2795 4.7553 0.0042 10 6 -1.0263 4.1749 0.0052 11 1 -0.9962 3.2135 0.5182 12 6 -1.9842 5.0946 0.7176 13 1 -1.6312 6.0291 1.1282 14 6 -3.3126 4.7460 0.8399 15 7 -3.7425 3.6082 0.3396 16 14 -4.5015 5.8895 1.7162 17 1 -5.0962 6.8320 0.7347 18 1 -5.5800 5.0903 2.3511 19 1 -3.7735 6.6556 2.7595 20 6 -1.4940 3.9690 -1.4369 21 17 -0.4335 2.7557 -2.2454 22 7 1.1046 2.5990 0.0063 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.2674 1.5492 -0.0016 27 1 5.3456 4.3048 1.0263 28 1 5.6836 3.4824 -0.5157 29 1 5.0047 5.1279 -0.5148 30 1 -4.6770 3.3627 0.4260 31 1 -2.5231 3.6096 -1.4373 32 1 -1.4395 4.9153 -1.9751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229079661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:35 Heat of formation + Delta-G solvation = -20.339881 kcal Electronic energy + Delta-G solvation = -18882.909141 eV Core-core repulsion = 15802.555150 eV Total energy + Delta-G solvation = -3080.353991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.044 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.02301 -39.46554 -36.62845 -35.47241 -35.27396 -33.03760 -31.13928 -29.93532 -29.29193 -27.34146 -25.14949 -24.59836 -22.51180 -19.79459 -19.02580 -18.34235 -17.62734 -17.08493 -16.73059 -16.46384 -15.40049 -15.30937 -15.11423 -14.80425 -14.58441 -14.36765 -13.95212 -13.75445 -13.49910 -13.43917 -13.04679 -12.99098 -12.89714 -12.60992 -12.25600 -12.06227 -11.80960 -11.63338 -11.59757 -11.21674 -11.09225 -10.69865 -10.07741 -9.84450 -8.77095 -8.40911 -6.57615 -0.04454 0.15072 0.42582 1.09699 1.38064 1.40622 1.51578 1.57305 1.85340 2.35946 2.74731 2.92969 3.30113 3.72723 3.86992 4.24056 4.28389 4.30051 4.33234 4.37755 4.39706 4.80074 4.82815 4.89665 5.00051 5.02737 5.22057 5.38253 5.49380 5.74143 5.88579 6.37775 6.55063 7.09769 7.24621 8.65988 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.006250 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.455872 B = 4478.746245 C = 5148.790078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.021 6.021 3 C 0.166 3.834 4 C -0.252 4.252 5 C 0.206 3.794 6 C -0.095 4.095 7 N -0.568 5.568 8 C 0.507 3.493 9 O -0.309 6.309 10 C 0.229 3.771 11 H 0.042 0.958 12 C -0.556 4.556 13 H 0.063 0.937 14 C 0.031 3.969 15 N -0.903 5.903 16 Si 0.980 3.020 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.022 4.022 21 Cl -0.214 7.214 22 N -0.561 5.561 23 H 0.080 0.920 24 H 0.127 0.873 25 H 0.070 0.930 26 H 0.184 0.816 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.277 0.723 31 H 0.122 0.878 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.737 -6.278 -1.166 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.217 5.783 3 C -0.090 4.090 4 C -0.281 4.281 5 C 0.060 3.940 6 C -0.152 4.152 7 N -0.299 5.299 8 C 0.202 3.798 9 O -0.211 6.211 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.593 4.593 13 H 0.081 0.919 14 C -0.170 4.170 15 N -0.540 5.540 16 Si 0.803 3.197 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.085 4.085 21 Cl -0.188 7.188 22 N -0.295 5.295 23 H 0.099 0.901 24 H 0.145 0.855 25 H 0.090 0.910 26 H 0.201 0.799 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.424 -6.580 -1.248 13.243 hybrid contribution -1.358 0.947 0.212 1.669 sum 10.066 -5.633 -1.037 11.582 Atomic orbital electron populations 1.23536 0.93516 1.07030 1.06508 1.85049 1.08238 0.95049 1.89978 1.23852 0.91987 0.99940 0.93239 1.22372 0.97142 0.97338 1.11289 1.22188 0.95460 0.89507 0.86830 1.20912 0.86603 1.02612 1.05105 1.67499 0.97381 1.41787 1.23221 1.20924 0.87007 0.84362 0.87466 1.86096 1.15266 1.34257 1.85467 1.20271 0.74472 0.95731 0.92176 0.93981 1.21215 0.93566 1.06532 1.38022 0.91850 1.25693 0.98906 0.96989 0.95459 1.69886 1.17470 1.22250 1.44395 0.85218 0.77591 0.78274 0.78640 1.19148 1.19722 1.19617 1.25303 0.97623 0.91076 0.94524 1.98617 1.72727 1.64358 1.83135 1.68581 1.35370 1.02894 1.22659 0.90090 0.85492 0.91038 0.79906 0.87903 0.86744 0.90212 0.91312 0.86054 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.68 113.37 1.10 -3.10 16 2 S -0.02 -0.57 22.74 -56.49 -1.28 -1.86 16 3 C 0.17 5.77 7.01 84.88 0.59 6.36 16 4 C -0.25 -7.17 9.61 22.58 0.22 -6.96 16 5 C 0.21 6.26 6.81 42.40 0.29 6.55 16 6 C -0.10 -1.75 10.21 71.24 0.73 -1.03 16 7 N -0.57 -23.29 10.40 -301.80 -3.14 -26.43 16 8 C 0.51 23.45 7.64 180.59 1.38 24.83 16 9 O -0.31 -16.14 9.81 -87.51 -0.86 -17.00 16 10 C 0.23 12.05 2.25 29.85 0.07 12.11 16 11 H 0.04 2.39 6.95 -2.38 -0.02 2.37 16 12 C -0.56 -30.58 8.89 25.60 0.23 -30.35 16 13 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 14 C 0.03 1.63 5.29 84.66 0.45 2.08 16 15 N -0.90 -47.50 11.28 21.45 0.24 -47.26 16 16 Si 0.98 41.14 29.54 68.60 2.03 43.16 16 17 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 C -0.02 -1.08 6.17 71.98 0.44 -0.63 16 21 Cl -0.21 -9.27 24.47 -2.72 -0.07 -9.33 16 22 N -0.56 -23.78 5.22 -309.62 -1.62 -25.40 16 23 H 0.08 2.87 6.64 -2.39 -0.02 2.85 16 24 H 0.13 2.98 8.14 -2.40 -0.02 2.96 16 25 H 0.07 2.50 8.13 -2.40 -0.02 2.48 16 26 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.11 1.33 8.09 -2.39 -0.02 1.31 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.28 13.61 8.31 -92.70 -0.77 12.84 16 31 H 0.12 6.21 5.94 -2.38 -0.01 6.19 16 32 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -62.80 300.85 1.94 -60.86 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.14 Total: 13.39 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.49 Total: 9.87 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.51 Total: -99.09 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.86 Total: -17.00 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -1.28 Total: -1.86 kcal Atomic # 17 Polarization: -9.27 SS G_CDS: -0.07 Total: -9.33 kcal Total: -62.80 1.94 -60.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229079661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.525 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds