Wall clock time and date at job start Fri Apr 10 2020 15:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.46926 * 2 1 4 4 C 1.38279 * 119.96664 * 89.99657 * 3 2 1 5 5 C 1.38244 * 120.12086 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.04457 * 0.27735 * 5 4 3 7 7 Cl 1.73589 * 120.03996 * 179.74299 * 6 5 4 8 8 C 1.38813 * 119.91900 * 359.49175 * 6 5 4 9 9 O 1.35924 * 120.05985 * 180.23103 * 8 6 5 10 10 C 1.42899 * 117.00247 * 176.98552 * 9 8 6 11 11 H 1.08998 * 109.46859 * 26.84409 * 10 9 8 12 12 C 1.50705 * 109.47265 * 146.84203 * 10 9 8 13 13 H 1.08002 * 119.99788 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00029 * 180.02562 * 12 10 9 15 15 N 1.31510 * 119.99981 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99741 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46985 * 89.99680 * 16 14 12 18 18 H 1.48494 * 109.46835 * 209.99823 * 16 14 12 19 19 H 1.48495 * 109.47010 * 329.99895 * 16 14 12 20 20 C 1.53002 * 109.47233 * 266.83956 * 10 9 8 21 21 Cl 1.80301 * 109.46709 * 65.00191 * 20 10 9 22 22 C 1.38153 * 119.95851 * 269.97348 * 3 2 1 23 23 H 1.08996 * 109.47118 * 300.00263 * 1 2 3 24 24 H 1.09000 * 109.46515 * 60.00735 * 1 2 3 25 25 H 1.09000 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47487 * 239.99100 * 2 1 3 27 27 H 1.09000 * 109.46515 * 119.99265 * 2 1 3 28 28 H 1.07998 * 119.93555 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.97759 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99864 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47077 * 184.99750 * 20 10 9 32 32 H 1.08991 * 109.47268 * 304.99994 * 20 10 9 33 33 H 1.07997 * 120.02235 * 0.04361 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2625 2.0720 1.1979 5 6 2.7237 3.3752 1.2017 6 6 2.9506 4.0326 0.0067 7 17 3.5235 5.6713 0.0116 8 6 2.7248 3.3790 -1.1969 9 8 2.9514 4.0210 -2.3733 10 6 2.7611 3.2661 -3.5716 11 1 2.0345 2.4741 -3.3904 12 6 2.2532 4.1739 -4.6620 13 1 2.0915 5.2225 -4.4600 14 6 1.9940 3.6657 -5.9172 15 7 2.1904 2.3888 -6.1630 16 14 1.3637 4.7910 -7.2686 17 1 2.5144 5.3658 -8.0107 18 1 0.5109 4.0131 -8.2027 19 1 0.5650 5.8885 -6.6664 20 6 4.0929 2.6479 -4.0018 21 17 4.6276 1.4510 -2.7639 22 6 2.2628 2.0711 -1.1969 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.0815 1.5616 2.1323 29 1 2.9023 3.8818 2.1386 30 1 2.0077 2.0312 -7.0460 31 1 3.9675 2.1465 -4.9615 32 1 4.8436 3.4322 -4.0970 33 1 2.0824 1.5618 -2.1320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233758800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:37 Heat of formation + Delta-G solvation = -58.901917 kcal Electronic energy + Delta-G solvation = -18732.030821 eV Core-core repulsion = 15615.668197 eV Total energy + Delta-G solvation = -3116.362624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.042 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.13554 -38.81364 -37.36176 -36.61134 -35.44359 -34.53160 -31.67821 -30.91200 -29.66316 -27.29636 -25.02826 -24.33109 -22.21031 -21.90742 -18.98327 -18.66880 -17.35678 -16.97157 -16.46278 -16.23073 -15.64310 -15.26543 -14.95578 -14.59881 -14.40088 -14.20126 -13.83175 -13.79308 -13.30910 -13.06359 -12.90466 -12.82114 -12.77834 -12.47712 -12.17000 -11.97888 -11.81553 -11.77384 -11.67906 -11.41779 -11.18319 -10.96697 -10.58735 -9.54001 -8.88464 -8.38979 -6.54201 0.26804 0.52957 1.33897 1.38197 1.41853 1.52283 1.58838 2.25251 2.64584 2.76108 2.96022 3.82942 3.89870 4.11538 4.26995 4.35585 4.39799 4.48028 4.52682 4.64276 4.68661 4.86890 4.98322 5.06628 5.12500 5.17210 5.31712 5.37350 5.41267 5.53724 5.69007 5.83276 5.90444 6.44354 6.77375 7.18026 8.67625 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.006522 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.800575 B = 4292.275488 C = 5000.871423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.044 4.044 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.103 4.103 7 Cl -0.076 7.076 8 C 0.135 3.865 9 O -0.318 6.318 10 C 0.214 3.786 11 H 0.034 0.966 12 C -0.548 4.548 13 H 0.063 0.937 14 C 0.030 3.970 15 N -0.907 5.907 16 Si 0.974 3.026 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.026 4.026 21 Cl -0.219 7.219 22 C -0.194 4.194 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.276 0.724 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 -3.392 11.966 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.045 4.045 4 C -0.167 4.167 5 C -0.091 4.091 6 C -0.130 4.130 7 Cl -0.047 7.047 8 C 0.087 3.913 9 O -0.232 6.232 10 C 0.158 3.842 11 H 0.051 0.949 12 C -0.586 4.586 13 H 0.081 0.919 14 C -0.172 4.172 15 N -0.544 5.544 16 Si 0.798 3.202 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.089 4.089 21 Cl -0.194 7.194 22 C -0.213 4.213 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.182 0.818 29 H 0.178 0.822 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.629 -3.278 11.848 12.309 hybrid contribution -0.030 0.533 -1.246 1.355 sum -0.659 -2.745 10.602 10.971 Atomic orbital electron populations 1.21717 0.93809 1.02643 1.01803 1.20609 0.96855 0.90989 1.03610 1.20062 0.95438 0.97078 0.91904 1.21131 1.03034 0.94135 0.98382 1.21110 0.97356 0.94930 0.95677 1.20420 1.11691 0.87894 0.93001 1.98309 1.87916 1.19615 1.98906 1.19121 0.94308 0.91611 0.86216 1.86158 1.82837 1.41239 1.12935 1.20278 0.92031 0.91786 0.80073 0.94883 1.21220 1.45896 0.96216 0.95251 0.91852 1.25671 0.94440 0.96890 1.00202 1.69869 1.47453 1.13220 1.23858 0.85290 0.78613 0.78410 0.77883 1.19384 1.19882 1.19569 1.25406 0.98114 0.91602 0.93791 1.98632 1.92316 1.65352 1.63050 1.21245 1.06053 0.94095 0.99945 0.91493 0.94538 0.90571 0.92018 0.88321 0.81846 0.82160 0.91415 0.86348 0.90986 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.08 -1.98 6.06 29.85 0.18 -1.80 16 3 C -0.04 -1.33 5.13 -19.88 -0.10 -1.43 16 4 C -0.15 -3.75 9.70 22.28 0.22 -3.53 16 5 C -0.07 -2.01 9.83 22.28 0.22 -1.79 16 6 C -0.10 -3.70 6.33 22.41 0.14 -3.56 16 7 Cl -0.08 -2.65 28.50 -2.72 -0.08 -2.73 16 8 C 0.13 5.60 5.97 22.52 0.13 5.74 16 9 O -0.32 -15.30 9.19 -92.69 -0.85 -16.15 16 10 C 0.21 10.68 2.19 29.85 0.07 10.74 16 11 H 0.03 1.77 5.39 -2.39 -0.01 1.76 16 12 C -0.55 -29.40 8.89 25.60 0.23 -29.17 16 13 H 0.06 3.48 7.81 -2.91 -0.02 3.45 16 14 C 0.03 1.51 5.29 84.66 0.45 1.96 16 15 N -0.91 -47.23 11.29 21.45 0.24 -46.99 16 16 Si 0.97 40.89 29.54 68.60 2.03 42.92 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 C -0.03 -1.22 6.17 71.98 0.44 -0.78 16 21 Cl -0.22 -9.05 25.61 -2.72 -0.07 -9.12 16 22 C -0.19 -7.45 6.70 22.36 0.15 -7.30 16 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 27 H 0.10 1.78 8.08 -2.39 -0.02 1.76 16 28 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 31 H 0.12 5.91 5.95 -2.39 -0.01 5.89 16 32 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.12 5.15 5.11 -2.91 -0.01 5.13 16 Total: -1.00 -56.58 305.04 5.23 -51.35 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.12 Total: 14.00 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 2.84 Total: -33.27 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.24 Total: -46.99 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.85 Total: -16.15 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 17 Polarization: -11.71 SS G_CDS: -0.15 Total: -11.85 kcal Total: -56.58 5.23 -51.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233758800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.555 kcal (2) G-P(sol) polarization free energy of solvation -56.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds