Wall clock time and date at job start Fri Apr 10 2020 15:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99525 * 2 1 4 4 O 1.20821 * 120.00460 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99443 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47271 * 60.00618 * 5 3 2 7 7 N 1.46905 * 109.46958 * 179.97438 * 5 3 2 8 8 C 1.46901 * 110.99795 * 275.00329 * 7 5 3 9 9 C 1.50707 * 109.46848 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99917 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00097 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99568 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00264 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46940 * 59.99504 * 13 11 9 15 15 H 1.48496 * 109.47033 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46916 * 299.99515 * 13 11 9 17 17 C 1.50696 * 109.47112 * 299.99997 * 5 3 2 18 18 C 1.38293 * 120.11375 * 280.02119 * 17 5 3 19 19 C 1.37934 * 120.34618 * 179.83089 * 18 17 5 20 20 C 1.39282 * 120.24319 * 359.96010 * 19 18 17 21 21 C 1.38884 * 118.87810 * 0.37225 * 20 19 18 22 22 C 1.37741 * 120.78134 * 359.48106 * 21 20 19 23 23 C 1.51638 * 107.04617 * 179.44718 * 21 20 19 24 24 C 1.54706 * 101.95770 * 344.59228 * 23 21 20 25 25 O 1.36143 * 129.88949 * 180.99829 * 20 19 18 26 26 H 1.08998 * 109.47522 * 300.00392 * 1 2 3 27 27 H 1.09009 * 109.47156 * 59.99960 * 1 2 3 28 28 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 29 29 H 1.00893 * 111.00172 * 151.04560 * 7 5 3 30 30 H 1.08997 * 109.46653 * 299.99406 * 8 7 5 31 31 H 1.09000 * 109.47474 * 59.99855 * 8 7 5 32 32 H 0.97001 * 119.99311 * 180.02562 * 12 11 9 33 33 H 1.07991 * 119.82735 * 359.81614 * 18 17 5 34 34 H 1.08002 * 119.88046 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.01235 * 180.36358 * 22 21 20 36 36 H 1.09002 * 110.93994 * 102.77103 * 23 21 20 37 37 H 1.08997 * 110.93769 * 226.42283 * 23 21 20 38 38 H 1.09003 * 110.74785 * 143.62371 * 24 23 21 39 39 H 1.08994 * 110.75591 * 266.97977 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8892 7 7 3.9828 2.6837 -0.0002 8 6 4.0179 3.2215 -1.3667 9 6 4.4490 4.6651 -1.3275 10 1 4.6739 5.1359 -0.3819 11 6 4.5552 5.3849 -2.4986 12 7 4.2808 4.8116 -3.6500 13 14 5.0889 7.1744 -2.4499 14 1 6.4417 7.2712 -1.8452 15 1 5.1245 7.7180 -3.8313 16 1 4.1251 7.9563 -1.6345 17 6 4.1046 0.5920 1.2314 18 6 4.1046 1.2516 2.4469 19 6 4.5930 0.6299 3.5771 20 6 5.0900 -0.6692 3.5039 21 6 5.0911 -1.3187 2.2763 22 6 4.6002 -0.6970 1.1494 23 6 5.6943 -2.6918 2.5004 24 6 6.3642 -2.5255 3.8849 25 8 5.5957 -1.4671 4.4842 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.8755 2.7971 0.4561 30 1 4.7256 2.6475 -1.9649 31 1 3.0251 3.1504 -1.8109 32 1 4.3559 5.3180 -4.4739 33 1 3.7205 2.2589 2.5114 34 1 4.5898 1.1522 4.5224 35 1 4.6017 -1.2159 0.2022 36 1 4.9191 -3.4574 2.5321 37 1 6.4349 -2.9216 1.7344 38 1 6.2793 -3.4427 4.4677 39 1 7.4080 -2.2311 3.7761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298526310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:06:05 Heat of formation + Delta-G solvation = -81.613247 kcal Electronic energy + Delta-G solvation = -22976.937600 eV Core-core repulsion = 19464.409529 eV Total energy + Delta-G solvation = -3512.528071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16769 -40.04453 -37.91598 -36.16025 -34.88213 -32.80125 -32.59469 -30.57793 -29.26867 -28.03987 -26.89335 -24.84556 -23.57749 -22.24938 -21.70910 -21.52976 -19.90815 -17.44262 -17.41619 -16.71059 -16.50412 -16.32363 -16.03945 -15.90088 -14.97344 -14.49576 -14.19015 -14.11635 -13.49865 -13.33349 -13.15112 -13.05028 -12.90649 -12.62561 -12.54428 -12.13861 -11.91454 -11.82733 -11.54768 -11.20591 -10.99939 -10.80842 -10.69754 -10.60507 -10.41252 -10.00747 -9.89514 -9.22463 -8.85807 -8.48223 -8.06557 -7.50662 -6.02203 -4.03691 1.26830 1.36054 2.75091 3.02619 3.16043 3.35842 3.39407 3.43047 3.70959 4.27291 4.40472 4.45794 4.76380 4.82295 4.90737 5.06791 5.16636 5.26155 5.31832 5.33327 5.35262 5.37438 5.47082 5.52986 5.57137 5.67236 5.68928 5.70931 6.07114 6.22779 6.35306 6.59450 6.62792 6.75790 7.11238 7.14270 7.32334 7.72315 8.07034 8.23029 8.36046 8.49671 9.03049 9.60361 11.09231 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.004215 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.465090 B = 6640.684832 C = 7696.555025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.463 3.537 4 O -0.470 6.470 5 C 0.146 3.854 6 H 0.082 0.918 7 N -0.664 5.664 8 C 0.194 3.806 9 C -0.511 4.511 10 H 0.064 0.936 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.901 3.099 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.111 4.111 18 C -0.058 4.058 19 C -0.139 4.139 20 C 0.103 3.897 21 C -0.180 4.180 22 C -0.047 4.047 23 C -0.108 4.108 24 C 0.052 3.948 25 O -0.308 6.308 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.345 0.655 30 H -0.010 1.010 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -17.236 12.076 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.302 3.698 4 O -0.353 6.353 5 C 0.034 3.966 6 H 0.099 0.901 7 N -0.299 5.299 8 C 0.068 3.932 9 C -0.550 4.550 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.729 3.271 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.112 4.112 18 C -0.076 4.076 19 C -0.157 4.157 20 C 0.059 3.941 21 C -0.181 4.181 22 C -0.066 4.066 23 C -0.145 4.145 24 C -0.023 4.023 25 O -0.222 6.222 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.166 0.834 30 H 0.008 0.992 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.043 -16.618 12.236 20.637 hybrid contribution 0.816 0.479 -0.677 1.163 sum 0.859 -16.139 11.559 19.870 Atomic orbital electron populations 1.23145 0.77324 1.02880 1.02369 1.86495 1.22628 1.34321 1.84969 1.23801 0.91790 0.81131 0.73096 1.90680 1.66149 1.36037 1.42442 1.19726 0.87590 0.93275 0.96029 0.90095 1.60314 1.35312 1.10179 1.24048 1.19696 0.96904 0.94857 0.81697 1.21051 1.45195 0.95612 0.93131 0.91828 1.24966 0.95527 0.98674 0.95316 1.69953 1.49178 1.36920 0.97716 0.86511 0.79096 0.84608 0.76892 1.20242 1.21370 1.20112 1.19475 1.02567 0.94639 0.94524 1.20941 0.95814 1.00333 0.90500 1.20247 1.04283 0.91358 0.99835 1.19596 0.95775 0.91644 0.87135 1.20614 1.06805 0.96294 0.94371 1.20147 0.95689 0.93414 0.97350 1.21753 1.00379 0.94851 0.97507 1.23831 0.95291 0.90058 0.93169 1.86832 1.65175 1.39128 1.31076 0.92282 0.92106 0.88725 0.83443 0.99220 0.94831 0.92845 0.83698 0.85326 0.85468 0.89285 0.89101 0.87820 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.54 16 2 O -0.37 -5.96 10.48 -39.26 -0.41 -6.37 16 3 C 0.46 8.91 7.12 36.01 0.26 9.16 16 4 O -0.47 -10.74 15.67 -18.75 -0.29 -11.04 16 5 C 0.15 2.64 2.73 -70.01 -0.19 2.45 16 6 H 0.08 1.43 7.67 -51.93 -0.40 1.03 16 7 N -0.66 -14.21 5.22 -110.45 -0.58 -14.79 16 8 C 0.19 5.12 5.13 -4.97 -0.03 5.09 16 9 C -0.51 -14.58 9.32 -34.44 -0.32 -14.91 16 10 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 13 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C -0.11 -1.69 4.64 -104.56 -0.49 -2.18 16 18 C -0.06 -0.85 8.99 -39.67 -0.36 -1.20 16 19 C -0.14 -1.85 10.06 -39.30 -0.40 -2.25 16 20 C 0.10 1.37 7.04 -38.95 -0.27 1.10 16 21 C -0.18 -2.21 6.27 -104.10 -0.65 -2.87 16 22 C -0.05 -0.63 9.66 -39.72 -0.38 -1.01 16 23 C -0.11 -0.93 7.11 -26.52 -0.19 -1.12 16 24 C 0.05 0.42 8.01 38.06 0.30 0.73 16 25 O -0.31 -3.77 11.11 -20.19 -0.22 -4.00 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 27 H 0.06 0.80 8.13 -51.92 -0.42 0.38 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.35 6.85 7.99 -39.30 -0.31 6.54 16 30 H -0.01 -0.27 8.05 -51.93 -0.42 -0.69 16 31 H 0.03 0.99 7.62 -51.93 -0.40 0.59 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.15 2.21 7.71 -52.49 -0.40 1.81 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 1.48 8.04 -52.49 -0.42 1.05 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -33.86 336.98 -7.74 -41.59 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.28 Total: 2.84 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.74 Total: -3.93 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.16 Total: -41.10 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.93 Total: -21.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.86 -7.74 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298526310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.021 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds