Wall clock time and date at job start Fri Apr 10 2020 15:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47049 * 2 1 4 4 C 1.35526 * 125.67918 * 260.92487 * 3 2 1 5 5 C 1.35451 * 108.87458 * 179.73888 * 4 3 2 6 6 C 1.39841 * 107.86383 * 0.02562 * 5 4 3 7 7 C 1.37655 * 125.67486 * 80.61914 * 3 2 1 8 8 C 1.46678 * 126.23402 * 0.26534 * 7 3 2 9 9 O 1.21692 * 120.00035 * 5.41637 * 8 7 3 10 10 N 1.34773 * 120.00183 * 185.41641 * 8 7 3 11 11 C 1.46494 * 120.00283 * 185.16980 * 10 8 7 12 12 C 1.53004 * 109.47061 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.64211 * 305.69467 * 12 11 10 14 14 C 1.55163 * 110.71640 * 182.56082 * 12 11 10 15 15 C 1.54913 * 101.57817 * 206.13151 * 14 12 11 16 16 N 1.47420 * 104.83009 * 37.01161 * 15 14 12 17 17 C 1.36938 * 125.64907 * 155.90495 * 16 15 14 18 18 H 1.07998 * 120.00360 * 179.97438 * 17 16 15 19 19 C 1.38814 * 120.00086 * 359.97163 * 17 16 15 20 20 N 1.31617 * 119.99628 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00346 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47141 * 60.00066 * 21 19 17 23 23 H 1.48498 * 109.47157 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47080 * 300.00122 * 21 19 17 25 25 C 1.47318 * 108.73891 * 335.71291 * 16 15 14 26 26 H 1.09005 * 109.46915 * 59.99697 * 1 2 3 27 27 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47091 * 299.99734 * 1 2 3 29 29 H 1.09004 * 109.46843 * 239.99843 * 2 1 3 30 30 H 1.08998 * 109.47168 * 120.00544 * 2 1 3 31 31 H 1.08001 * 125.56333 * 359.75931 * 4 3 2 32 32 H 1.07996 * 126.07134 * 180.02562 * 5 4 3 33 33 H 1.07996 * 126.46262 * 179.97438 * 6 5 4 34 34 H 0.97003 * 119.99425 * 5.17207 * 10 8 7 35 35 H 1.09001 * 109.47406 * 299.99925 * 11 10 8 36 36 H 1.09000 * 109.47301 * 60.00117 * 11 10 8 37 37 H 1.09000 * 111.00417 * 324.20722 * 14 12 11 38 38 H 1.09001 * 111.00440 * 88.02476 * 14 12 11 39 39 H 1.08998 * 110.36381 * 155.84342 * 15 14 12 40 40 H 1.08992 * 110.36781 * 278.06137 * 15 14 12 41 41 H 0.97006 * 120.00227 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.06484 * 241.87622 * 25 16 15 43 43 H 1.08998 * 109.85283 * 120.61339 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4455 2.0686 -1.0871 5 6 2.8141 3.3136 -0.7013 6 6 2.6118 3.4125 0.6788 7 6 2.1141 2.1988 1.1033 8 6 1.7531 1.8434 2.4798 9 8 1.4164 0.7046 2.7458 10 7 1.7943 2.7779 3.4500 11 6 1.5443 2.3992 4.8429 12 6 1.6497 3.6378 5.7349 13 1 2.6072 4.1374 5.5872 14 6 1.4531 3.2583 7.2265 15 6 0.9214 4.5877 7.8181 16 7 0.0549 5.1491 6.7657 17 6 -0.9730 6.0317 6.9649 18 1 -1.5510 6.3860 6.1243 19 6 -1.2720 6.4710 8.2473 20 7 -0.5673 6.0395 9.2717 21 14 -2.6737 7.6755 8.5189 22 1 -3.9439 7.0729 8.0408 23 1 -2.7864 7.9855 9.9668 24 1 -2.4046 8.9262 7.7649 25 6 0.4803 4.6074 5.4635 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.4853 1.6862 -2.0964 32 1 3.1963 4.0918 -1.3453 33 1 2.8081 4.2768 1.2960 34 1 1.9896 3.7013 3.2259 35 1 0.5447 1.9733 4.9299 36 1 2.2823 1.6610 5.1569 37 1 0.7173 2.4613 7.3332 38 1 2.4005 2.9768 7.6863 39 1 0.3441 4.3963 8.7226 40 1 1.7480 5.2650 8.0325 41 1 -0.7759 6.3468 10.1678 42 1 0.8127 5.4161 4.8126 43 1 -0.3462 4.0702 4.9982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028986037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:07:19 Heat of formation + Delta-G solvation = 32.702068 kcal Electronic energy + Delta-G solvation = -23057.603713 eV Core-core repulsion = 19718.158572 eV Total energy + Delta-G solvation = -3339.445141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52082 -39.14010 -37.53218 -34.91491 -34.08590 -32.50167 -30.27158 -29.46970 -29.25183 -27.97331 -25.53218 -23.91392 -23.63530 -22.12731 -20.67267 -20.30763 -19.80209 -19.16350 -17.90173 -16.83116 -15.96968 -15.86675 -15.51001 -15.07288 -14.69113 -14.51842 -14.23163 -13.88720 -13.78011 -13.55739 -12.82576 -12.63940 -12.50900 -12.45450 -12.38440 -12.11767 -11.75394 -11.67998 -11.47896 -11.40676 -10.94546 -10.77768 -10.42111 -10.15191 -10.03133 -9.94157 -9.75121 -9.50228 -9.00573 -8.89219 -8.63666 -8.31746 -6.82398 -5.64196 -3.05764 1.40963 2.52088 2.62702 3.38781 3.39824 3.41619 3.45640 3.47018 4.48843 4.49718 4.72534 4.80830 4.84083 5.06422 5.13111 5.21188 5.24815 5.26928 5.41620 5.46641 5.53855 5.60145 5.70321 5.89128 5.91537 5.92874 6.03264 6.09031 6.12872 6.35759 6.43874 6.56542 6.59309 6.63456 6.75002 6.86487 6.92210 7.07730 7.52312 7.57648 7.63333 7.86606 8.23917 8.37551 9.23386 9.84129 10.49156 11.39762 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.003081 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.587760 B = 9084.981064 C = 9358.431517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.010 3.990 5 C -0.208 4.208 6 C -0.142 4.142 7 C -0.048 4.048 8 C 0.585 3.415 9 O -0.553 6.553 10 N -0.712 5.712 11 C 0.136 3.864 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.141 3.859 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.166 0.834 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.019 0.981 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -9.973 -18.728 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.023 4.023 3 N -0.081 5.081 4 C -0.125 4.125 5 C -0.232 4.232 6 C -0.169 4.169 7 C -0.161 4.161 8 C 0.373 3.627 9 O -0.433 6.433 10 N -0.363 5.363 11 C 0.012 3.988 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.015 3.985 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.183 0.817 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.239 0.761 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.196 -11.056 -18.293 22.553 hybrid contribution -0.528 1.210 -0.127 1.326 sum 6.668 -9.846 -18.420 21.925 Atomic orbital electron populations 1.22073 0.93970 1.03058 1.03012 1.22016 0.96098 0.79600 1.04636 1.44077 1.46393 1.11534 1.06127 1.21989 1.05120 0.93527 0.91855 1.20812 1.09807 0.97165 0.95455 1.21397 1.03691 0.96003 0.95764 1.20131 1.14714 0.92753 0.88546 1.16996 0.77381 0.85010 0.83351 1.90773 1.48894 1.20249 1.83415 1.45744 1.71586 1.11496 1.07455 1.21480 1.01694 0.97161 0.78421 1.22453 0.99692 0.95012 0.96261 0.90501 1.23006 1.00219 1.01065 0.93110 1.21922 0.92995 0.88090 0.94248 1.44568 1.35975 1.51906 1.00637 1.19042 1.06100 1.17061 0.92955 0.90587 1.24785 0.99672 1.00716 0.95517 1.69785 1.41528 1.47389 0.98468 0.86147 0.81738 0.80748 0.76839 1.21163 1.21568 1.21225 1.21387 0.93439 0.93783 0.89929 0.92447 0.90751 0.91255 0.89491 0.87794 0.81682 0.84109 0.83836 0.76135 0.91063 0.91582 0.91838 0.92101 0.87543 0.97019 0.93688 0.96283 0.95723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.16 37.16 0.38 -1.15 16 2 C 0.10 0.92 6.11 -4.04 -0.02 0.89 16 3 N -0.41 -4.53 2.76 -112.87 -0.31 -4.85 16 4 C 0.01 0.10 11.36 -16.91 -0.19 -0.10 16 5 C -0.21 -2.05 10.81 -39.98 -0.43 -2.48 16 6 C -0.14 -1.59 10.35 -39.12 -0.40 -2.00 16 7 C -0.05 -0.61 6.88 -81.98 -0.56 -1.18 16 8 C 0.58 8.55 7.77 -12.85 -0.10 8.45 16 9 O -0.55 -9.35 14.24 5.20 0.07 -9.28 16 10 N -0.71 -9.68 5.40 -61.62 -0.33 -10.01 16 11 C 0.14 2.02 5.01 -4.04 -0.02 2.00 16 12 C -0.11 -1.91 2.98 -88.78 -0.26 -2.17 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.13 -2.49 6.54 -24.58 -0.16 -2.65 16 15 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 16 N -0.60 -15.51 3.40 -169.84 -0.58 -16.09 16 17 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.14 2.87 6.66 -2.91 -0.02 2.86 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.85 7.57 -51.93 -0.39 0.46 16 29 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.10 1.15 6.75 -51.93 -0.35 0.80 16 31 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.14 1.36 7.49 -52.49 -0.39 0.96 16 34 H 0.40 4.80 7.35 -40.82 -0.30 4.50 16 35 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -32.60 349.21 -9.17 -41.77 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.75 Total: 3.18 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.07 Total: -0.72 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.66 Total: -57.36 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.60 -9.17 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028986037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.474 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds