Wall clock time and date at job start Fri Apr 10 2020 15:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46850 * 2 1 4 4 C 1.35532 * 125.68175 * 267.18770 * 3 2 1 5 5 C 1.35449 * 108.87350 * 180.26595 * 4 3 2 6 6 C 1.39832 * 107.86594 * 359.76640 * 5 4 3 7 7 C 1.37652 * 125.67493 * 87.05710 * 3 2 1 8 8 C 1.46673 * 126.23705 * 0.02562 * 7 3 2 9 9 O 1.21701 * 119.99885 * 352.84390 * 8 7 3 10 10 N 1.34779 * 120.00394 * 172.84502 * 8 7 3 11 11 C 1.46504 * 119.99559 * 4.09400 * 10 8 7 12 12 C 1.46498 * 120.00172 * 184.09137 * 10 8 7 13 13 H 1.08996 * 110.64174 * 10.17046 * 12 10 8 14 14 C 1.55162 * 110.71615 * 247.03424 * 12 10 8 15 15 C 1.54907 * 101.58304 * 277.13595 * 14 12 10 16 16 N 1.47430 * 104.92832 * 322.94068 * 15 14 12 17 17 C 1.36940 * 125.64843 * 204.15171 * 16 15 14 18 18 H 1.07998 * 119.99832 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99884 * 0.02782 * 17 16 15 20 20 N 1.31618 * 120.00049 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47116 * 89.99734 * 21 19 17 23 23 H 1.48505 * 109.46910 * 209.99587 * 21 19 17 24 24 H 1.48499 * 109.47142 * 329.99127 * 21 19 17 25 25 C 1.47291 * 108.55941 * 24.15181 * 16 15 14 26 26 H 1.09001 * 109.46823 * 185.00934 * 1 2 3 27 27 H 1.09002 * 109.46700 * 305.00250 * 1 2 3 28 28 H 1.08996 * 109.47329 * 65.00517 * 1 2 3 29 29 H 1.08994 * 109.46893 * 240.00412 * 2 1 3 30 30 H 1.08994 * 109.47400 * 119.99923 * 2 1 3 31 31 H 1.08004 * 125.56036 * 0.07744 * 4 3 2 32 32 H 1.07997 * 126.06398 * 179.75163 * 5 4 3 33 33 H 1.08005 * 126.45716 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46988 * 183.64234 * 11 10 8 35 35 H 1.09000 * 109.47134 * 303.64205 * 11 10 8 36 36 H 1.08992 * 109.47259 * 63.64349 * 11 10 8 37 37 H 1.09004 * 111.00091 * 159.06667 * 14 12 10 38 38 H 1.09002 * 111.04261 * 35.22725 * 14 12 10 39 39 H 1.09001 * 110.36872 * 81.82937 * 15 14 12 40 40 H 1.08993 * 110.37197 * 204.04828 * 15 14 12 41 41 H 0.96997 * 120.00154 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.85889 * 239.50580 * 25 16 15 43 43 H 1.08996 * 109.87253 * 118.35950 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3327 2.1086 -1.0996 5 6 2.7524 3.3355 -0.7081 6 6 2.6948 3.3832 0.6883 7 6 2.2318 2.1573 1.1167 8 6 2.0130 1.7516 2.5092 9 8 1.4833 0.6841 2.7559 10 7 2.3986 2.5610 3.5155 11 6 2.9539 3.8840 3.2195 12 6 2.2623 2.1179 4.9052 13 1 2.0064 1.0592 4.9476 14 6 1.2012 2.9694 5.6512 15 6 2.0307 4.2125 6.0590 16 7 3.3639 3.6841 6.4008 17 6 4.2714 4.2846 7.2321 18 1 5.2257 3.8149 7.4192 19 6 3.9646 5.4971 7.8343 20 7 2.8018 6.0698 7.6060 21 14 5.2028 6.3167 8.9677 22 1 6.0800 7.2154 8.1754 23 1 4.4830 7.1089 9.9971 24 1 6.0297 5.2773 9.6319 25 6 3.5548 2.4035 5.6986 26 1 -0.3633 -1.0238 0.0897 27 1 -0.3633 0.5895 0.8418 28 1 -0.3634 0.4342 -0.9314 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.2632 1.7648 -2.1211 32 1 3.0744 4.1349 -1.3589 33 1 2.9631 4.2222 1.3133 34 1 3.2660 4.3630 4.1476 35 1 3.8141 3.7774 2.5586 36 1 2.1949 4.4959 2.7323 37 1 0.8265 2.4444 6.5299 38 1 0.3835 3.2464 4.9859 39 1 2.1019 4.9112 5.2255 40 1 1.5827 4.7002 6.9247 41 1 2.5876 6.9172 8.0265 42 1 3.7293 1.6070 6.4218 43 1 4.4005 2.4782 5.0150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033667613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:07:22 Heat of formation + Delta-G solvation = 71.959071 kcal Electronic energy + Delta-G solvation = -24157.897248 eV Core-core repulsion = 20820.154418 eV Total energy + Delta-G solvation = -3337.742830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44066 -39.36020 -37.25396 -34.91244 -33.78914 -32.18819 -29.82715 -29.35514 -28.79266 -27.62065 -26.48292 -24.44389 -23.53936 -22.34047 -20.82785 -20.11235 -19.49132 -18.79966 -17.12260 -16.86345 -16.36628 -15.53315 -15.35918 -14.74868 -14.56061 -14.44511 -13.96561 -13.81661 -13.68415 -12.89653 -12.87904 -12.57000 -12.37030 -12.27867 -12.22697 -12.00288 -11.81389 -11.61052 -11.32329 -11.08090 -11.00872 -10.87178 -10.79950 -10.22113 -10.12666 -9.88345 -9.57431 -9.43654 -8.73156 -8.67286 -8.29874 -8.08161 -6.88349 -5.68218 -3.10830 1.60680 2.66530 2.80800 3.38543 3.44097 3.45854 3.47423 3.56416 4.46662 4.61036 4.73273 4.93988 4.96859 5.16798 5.36707 5.41206 5.43648 5.45496 5.47487 5.57731 5.63479 5.68497 5.72856 5.86800 5.91465 6.00516 6.11824 6.19852 6.28996 6.31707 6.39880 6.57705 6.62078 6.71873 6.79460 7.04284 7.09314 7.26554 7.45211 7.59781 7.73484 7.83384 8.32204 8.42931 9.18331 9.78551 10.43099 11.35058 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.003901 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.504191 B = 7176.485233 C = 7656.184029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.410 5.410 4 C 0.007 3.993 5 C -0.212 4.212 6 C -0.161 4.161 7 C -0.043 4.043 8 C 0.582 3.418 9 O -0.562 6.562 10 N -0.578 5.578 11 C 0.053 3.947 12 C 0.129 3.871 13 H 0.098 0.902 14 C -0.155 4.155 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.127 3.873 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.107 0.893 41 H 0.252 0.748 42 H 0.035 0.965 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 -7.848 -16.346 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.084 5.084 4 C -0.128 4.128 5 C -0.236 4.236 6 C -0.186 4.186 7 C -0.156 4.156 8 C 0.372 3.628 9 O -0.443 6.443 10 N -0.308 5.308 11 C -0.090 4.090 12 C 0.026 3.974 13 H 0.116 0.884 14 C -0.194 4.194 15 C 0.021 3.979 16 N -0.330 5.330 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.181 0.819 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.174 -8.591 -16.017 18.451 hybrid contribution 0.660 0.544 0.332 0.918 sum -2.514 -8.047 -15.685 17.807 Atomic orbital electron populations 1.22050 0.94116 1.03034 1.02641 1.21971 0.95985 0.79814 1.04484 1.44044 1.47720 1.11617 1.05042 1.21945 1.06344 0.93117 0.91381 1.20882 1.09865 0.97515 0.95378 1.22486 1.03369 0.97146 0.95627 1.20101 1.14373 0.93398 0.87707 1.17033 0.78470 0.83802 0.83503 1.90733 1.44964 1.23652 1.84973 1.47443 1.61071 1.16717 1.05577 1.22727 0.97867 0.83555 1.04811 1.22162 0.97185 0.99242 0.78822 0.88357 1.23381 0.97270 0.99751 0.99021 1.22086 0.84291 0.90933 1.00595 1.44627 1.15639 1.19789 1.52941 1.19067 0.95730 1.01667 1.18705 0.90466 1.24770 0.97422 0.97589 1.00656 1.69795 1.21114 1.18602 1.47438 0.86079 0.80021 0.79228 0.80193 1.21617 1.21690 1.20738 1.21666 0.94151 0.90338 0.93841 0.90916 0.91272 0.92634 0.89762 0.87837 0.81938 0.84285 0.81612 0.86810 0.91601 0.92037 0.91086 0.92057 0.96186 0.87568 0.93700 0.94724 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.20 37.16 0.38 -1.26 16 2 C 0.10 1.07 6.12 -4.04 -0.02 1.05 16 3 N -0.41 -5.32 2.76 -112.87 -0.31 -5.63 16 4 C 0.01 0.08 11.37 -16.91 -0.19 -0.12 16 5 C -0.21 -2.50 10.81 -39.98 -0.43 -2.93 16 6 C -0.16 -2.20 8.78 -39.12 -0.34 -2.55 16 7 C -0.04 -0.65 6.82 -81.98 -0.56 -1.21 16 8 C 0.58 10.14 7.63 -12.85 -0.10 10.05 16 9 O -0.56 -10.65 13.98 5.19 0.07 -10.58 16 10 N -0.58 -10.10 2.84 -173.38 -0.49 -10.60 16 11 C 0.05 0.85 6.99 59.85 0.42 1.27 16 12 C 0.13 2.42 3.53 -66.10 -0.23 2.19 16 13 H 0.10 1.84 7.08 -51.93 -0.37 1.47 16 14 C -0.15 -3.02 6.69 -24.58 -0.16 -3.18 16 15 C 0.15 3.38 5.01 -2.53 -0.01 3.36 16 16 N -0.60 -14.75 2.86 -169.86 -0.49 -15.24 16 17 C -0.22 -6.01 10.28 -15.06 -0.15 -6.16 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -25.91 10.09 55.49 0.56 -25.35 16 21 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.13 2.63 6.18 -2.92 -0.02 2.61 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.10 1.32 6.67 -51.93 -0.35 0.97 16 31 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.17 2.13 4.09 -52.48 -0.21 1.92 16 34 H 0.11 2.22 4.22 -51.93 -0.22 2.00 16 35 H 0.07 0.96 6.17 -51.93 -0.32 0.64 16 36 H 0.06 0.91 6.77 -51.93 -0.35 0.56 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.48 5.92 -51.93 -0.31 0.17 16 40 H 0.11 2.83 5.87 -51.93 -0.30 2.52 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.03 0.61 7.72 -51.93 -0.40 0.21 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -30.45 332.80 -8.37 -38.82 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.17 Total: 4.25 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.53 Total: 2.78 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.73 Total: -56.82 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.45 -8.37 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033667613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.777 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds