Wall clock time and date at job start Fri Apr 10 2020 15:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46850 * 2 1 4 4 C 1.35532 * 125.68175 * 267.18770 * 3 2 1 5 5 C 1.35449 * 108.87350 * 180.26595 * 4 3 2 6 6 C 1.39832 * 107.86594 * 359.76640 * 5 4 3 7 7 C 1.37652 * 125.67493 * 87.05710 * 3 2 1 8 8 C 1.46673 * 126.23705 * 0.02562 * 7 3 2 9 9 O 1.21701 * 119.99885 * 352.84390 * 8 7 3 10 10 N 1.34779 * 120.00394 * 172.84502 * 8 7 3 11 11 C 1.46504 * 119.99559 * 4.09400 * 10 8 7 12 12 C 1.46498 * 120.00172 * 184.09137 * 10 8 7 13 13 H 1.08996 * 110.64174 * 10.17046 * 12 10 8 14 14 C 1.55162 * 110.71615 * 247.03424 * 12 10 8 15 15 C 1.54907 * 101.58304 * 277.13595 * 14 12 10 16 16 N 1.47430 * 104.92832 * 322.94068 * 15 14 12 17 17 C 1.36940 * 125.64843 * 204.15171 * 16 15 14 18 18 H 1.07998 * 119.99832 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99884 * 0.02782 * 17 16 15 20 20 N 1.31618 * 120.00049 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47116 * 89.99734 * 21 19 17 23 23 H 1.48505 * 109.46910 * 209.99587 * 21 19 17 24 24 H 1.48499 * 109.47142 * 329.99127 * 21 19 17 25 25 C 1.47291 * 108.55941 * 24.15181 * 16 15 14 26 26 H 1.09001 * 109.46823 * 185.00934 * 1 2 3 27 27 H 1.09002 * 109.46700 * 305.00250 * 1 2 3 28 28 H 1.08996 * 109.47329 * 65.00517 * 1 2 3 29 29 H 1.08994 * 109.46893 * 240.00412 * 2 1 3 30 30 H 1.08994 * 109.47400 * 119.99923 * 2 1 3 31 31 H 1.08004 * 125.56036 * 0.07744 * 4 3 2 32 32 H 1.07997 * 126.06398 * 179.75163 * 5 4 3 33 33 H 1.08005 * 126.45716 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46988 * 183.64234 * 11 10 8 35 35 H 1.09000 * 109.47134 * 303.64205 * 11 10 8 36 36 H 1.08992 * 109.47259 * 63.64349 * 11 10 8 37 37 H 1.09004 * 111.00091 * 159.06667 * 14 12 10 38 38 H 1.09002 * 111.04261 * 35.22725 * 14 12 10 39 39 H 1.09001 * 110.36872 * 81.82937 * 15 14 12 40 40 H 1.08993 * 110.37197 * 204.04828 * 15 14 12 41 41 H 0.96997 * 120.00154 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.85889 * 239.50580 * 25 16 15 43 43 H 1.08996 * 109.87253 * 118.35950 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3327 2.1086 -1.0996 5 6 2.7524 3.3355 -0.7081 6 6 2.6948 3.3832 0.6883 7 6 2.2318 2.1573 1.1167 8 6 2.0130 1.7516 2.5092 9 8 1.4833 0.6841 2.7559 10 7 2.3986 2.5610 3.5155 11 6 2.9539 3.8840 3.2195 12 6 2.2623 2.1179 4.9052 13 1 2.0064 1.0592 4.9476 14 6 1.2012 2.9694 5.6512 15 6 2.0307 4.2125 6.0590 16 7 3.3639 3.6841 6.4008 17 6 4.2714 4.2846 7.2321 18 1 5.2257 3.8149 7.4192 19 6 3.9646 5.4971 7.8343 20 7 2.8018 6.0698 7.6060 21 14 5.2028 6.3167 8.9677 22 1 6.0800 7.2154 8.1754 23 1 4.4830 7.1089 9.9971 24 1 6.0297 5.2773 9.6319 25 6 3.5548 2.4035 5.6986 26 1 -0.3633 -1.0238 0.0897 27 1 -0.3633 0.5895 0.8418 28 1 -0.3634 0.4342 -0.9314 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.2632 1.7648 -2.1211 32 1 3.0744 4.1349 -1.3589 33 1 2.9631 4.2222 1.3133 34 1 3.2660 4.3630 4.1476 35 1 3.8141 3.7774 2.5586 36 1 2.1949 4.4959 2.7323 37 1 0.8265 2.4444 6.5299 38 1 0.3835 3.2464 4.9859 39 1 2.1019 4.9112 5.2255 40 1 1.5827 4.7002 6.9247 41 1 2.5876 6.9172 8.0265 42 1 3.7293 1.6070 6.4218 43 1 4.4005 2.4782 5.0150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033667613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:07:21 Heat of formation + Delta-G solvation = 55.158362 kcal Electronic energy + Delta-G solvation = -24158.625781 eV Core-core repulsion = 20820.154418 eV Total energy + Delta-G solvation = -3338.471363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46556 -40.74938 -38.81595 -36.29032 -34.93762 -33.95462 -31.43572 -30.35260 -30.18545 -29.08452 -27.97571 -26.28692 -24.41545 -23.64665 -22.16066 -21.66083 -20.83287 -19.99128 -18.91912 -18.12956 -17.81199 -16.77901 -16.64201 -16.56672 -15.70665 -15.65873 -15.54157 -15.07442 -14.73448 -14.38551 -14.16239 -13.85346 -13.80194 -13.59019 -13.42498 -13.31097 -13.10052 -12.92663 -12.85812 -12.76505 -12.48323 -12.35832 -12.10316 -12.00874 -11.84721 -11.68615 -11.43674 -10.86016 -10.66334 -9.78011 -9.57438 -9.12172 -8.87541 -7.74210 -5.18855 0.50994 1.50646 1.51349 1.59999 1.61101 1.87674 2.29461 2.35871 2.52014 3.36537 3.51708 3.71379 3.83598 3.86114 4.00217 4.13185 4.19743 4.24722 4.31290 4.39961 4.48200 4.52375 4.59003 4.63099 4.66606 4.77756 4.85729 4.90469 4.92598 5.00670 5.09037 5.18226 5.21106 5.33296 5.48139 5.55067 5.63862 5.83233 5.90843 6.05591 6.32317 6.37127 6.43680 7.10053 7.13188 7.78230 8.42722 9.26999 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.003901 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.504191 B = 7176.485233 C = 7656.184029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 N -0.415 5.415 4 C 0.027 3.973 5 C -0.224 4.224 6 C -0.161 4.161 7 C -0.083 4.083 8 C 0.579 3.421 9 O -0.585 6.585 10 N -0.583 5.583 11 C 0.064 3.936 12 C 0.142 3.858 13 H 0.102 0.898 14 C -0.141 4.141 15 C 0.154 3.846 16 N -0.618 5.618 17 C -0.237 4.237 18 H 0.079 0.921 19 C -0.059 4.059 20 N -0.945 5.945 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.273 1.273 25 C 0.130 3.870 26 H 0.088 0.912 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.206 0.794 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.247 0.753 42 H 0.038 0.962 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -8.519 -18.845 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 N -0.089 5.089 4 C -0.108 4.108 5 C -0.248 4.248 6 C -0.188 4.188 7 C -0.196 4.196 8 C 0.371 3.629 9 O -0.468 6.468 10 N -0.313 5.313 11 C -0.078 4.078 12 C 0.038 3.962 13 H 0.120 0.880 14 C -0.180 4.180 15 C 0.030 3.970 16 N -0.345 5.345 17 C -0.366 4.366 18 H 0.097 0.903 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.198 1.198 25 C 0.004 3.996 26 H 0.107 0.893 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.097 0.903 31 H 0.222 0.778 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.688 -9.283 -18.529 20.898 hybrid contribution 0.515 0.722 0.994 1.332 sum -2.173 -8.562 -17.534 19.634 Atomic orbital electron populations 1.21993 0.93785 1.03509 1.01848 1.22112 0.96230 0.79065 1.05123 1.44282 1.47503 1.12229 1.04867 1.22679 1.03315 0.92391 0.92448 1.21233 1.10135 0.98785 0.94616 1.22641 1.02538 0.96572 0.97000 1.19896 1.17595 0.94830 0.87239 1.17371 0.77772 0.83289 0.84432 1.90708 1.46047 1.24559 1.85479 1.47438 1.61578 1.17217 1.05086 1.22649 0.98811 0.82965 1.03390 1.21910 0.95580 0.99177 0.79561 0.87973 1.23227 0.97204 0.98148 0.99469 1.21830 0.84329 0.92122 0.98747 1.44799 1.15768 1.20894 1.53000 1.19389 0.96294 1.02002 1.18910 0.90270 1.25526 0.99138 0.98292 1.02264 1.70031 1.22563 1.18569 1.48280 0.85095 0.77937 0.78179 0.78179 1.21298 1.22189 1.19795 1.21709 0.95249 0.88847 0.93826 0.89340 0.94857 0.90976 0.85949 0.90324 0.77772 0.81914 0.81538 0.90005 0.89985 0.90780 0.90714 0.91031 0.97071 0.91018 0.94319 0.94421 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.20 71.98 0.73 -2.14 16 2 C 0.10 1.86 6.12 86.38 0.53 2.39 16 3 N -0.42 -9.78 2.76 -511.02 -1.41 -11.19 16 4 C 0.03 0.49 11.37 83.48 0.95 1.44 16 5 C -0.22 -4.55 10.81 22.01 0.24 -4.31 16 6 C -0.16 -4.15 8.78 22.57 0.20 -3.96 16 7 C -0.08 -2.45 6.82 40.35 0.28 -2.18 16 8 C 0.58 20.15 7.63 86.45 0.66 20.80 16 9 O -0.58 -22.37 13.98 -4.35 -0.06 -22.43 16 10 N -0.58 -20.41 2.84 -820.65 -2.33 -22.75 16 11 C 0.06 2.07 6.99 127.77 0.89 2.97 16 12 C 0.14 5.34 3.53 46.18 0.16 5.51 16 13 H 0.10 3.81 7.08 -2.39 -0.02 3.80 16 14 C -0.14 -5.56 6.69 31.99 0.21 -5.34 16 15 C 0.15 7.38 5.01 86.85 0.43 7.81 16 16 N -0.62 -30.83 2.86 -691.32 -1.98 -32.81 16 17 C -0.24 -12.93 10.28 84.03 0.86 -12.06 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 19 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 20 N -0.94 -54.55 10.09 21.65 0.22 -54.33 16 21 Si 0.98 44.74 29.55 68.60 2.03 46.77 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C 0.13 5.43 6.18 86.68 0.54 5.96 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 0.86 7.89 -2.39 -0.02 0.84 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.12 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.08 1.95 6.67 -2.39 -0.02 1.94 16 31 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.17 4.08 4.09 -2.91 -0.01 4.07 16 34 H 0.08 3.25 4.22 -2.39 -0.01 3.24 16 35 H 0.08 2.37 6.17 -2.39 -0.01 2.35 16 36 H 0.07 2.19 6.77 -2.39 -0.02 2.17 16 37 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.01 0.56 5.92 -2.39 -0.01 0.55 16 40 H 0.07 3.97 5.87 -2.39 -0.01 3.95 16 41 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.03 1.27 7.72 -2.39 -0.02 1.25 16 Total: -1.00 -67.09 332.80 4.63 -62.46 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.01 Total: 20.18 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 7.15 Total: 14.10 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -5.51 Total: -121.07 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.09 4.63 -62.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033667613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.618 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds