Wall clock time and date at job start Fri Apr 10 2020 15:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 N 1.46903 * 109.47059 * 119.99550 * 2 1 3 5 5 C 1.46900 * 111.00425 * 275.00591 * 4 2 1 6 6 C 1.52994 * 109.47557 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.46970 * 304.99717 * 6 5 4 8 8 C 1.47205 * 109.47251 * 64.99350 * 6 5 4 9 9 N 4.90938 * 135.91156 * 112.22432 * 2 1 3 10 10 C 1.52997 * 109.47404 * 184.99766 * 6 5 4 11 11 C 1.50701 * 109.47212 * 174.99684 * 10 6 5 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 6 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 6 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.50698 * 109.47306 * 239.99962 * 2 1 3 20 20 C 1.38244 * 120.00180 * 264.99674 * 19 2 1 21 21 C 1.38216 * 120.00724 * 179.97438 * 20 19 2 22 22 C 1.38263 * 120.03278 * 0.04844 * 21 20 19 23 23 C 1.38199 * 120.00886 * 359.97427 * 22 21 20 24 24 C 1.38328 * 120.01021 * 84.72775 * 19 2 1 25 25 Cl 1.73605 * 120.01161 * 359.97403 * 24 19 2 26 26 H 1.08998 * 109.46949 * 60.00508 * 1 2 3 27 27 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47414 * 299.99763 * 1 2 3 29 29 H 1.00900 * 110.99940 * 151.04516 * 4 2 1 30 30 H 1.09001 * 109.46898 * 59.99249 * 5 4 2 31 31 H 1.09009 * 109.46674 * 299.99940 * 5 4 2 32 32 H 1.09002 * 109.47153 * 54.99686 * 10 6 5 33 33 H 1.09001 * 109.46832 * 294.99876 * 10 6 5 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.07999 * 119.99738 * 0.02562 * 20 19 2 36 36 H 1.08004 * 119.98468 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.99856 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.00324 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2226 2.3470 6 6 2.5961 -0.5327 3.5743 7 1 1.9708 -1.4081 3.7502 8 6 3.9851 -0.9607 3.3411 9 7 5.0562 -1.2920 3.1620 10 6 2.5438 0.3854 4.7971 11 6 2.9327 -0.3935 6.0271 12 1 3.1917 -1.4388 5.9449 13 6 2.9588 0.2285 7.2573 14 7 2.6439 1.5014 7.3574 15 14 3.4416 -0.7369 8.7819 16 1 4.8199 -1.2650 8.6176 17 1 3.3907 0.1542 9.9688 18 1 2.4976 -1.8675 8.9715 19 6 2.0324 -0.7104 -1.2304 20 6 2.3612 -2.0517 -1.1684 21 6 2.8215 -2.7035 -2.2969 22 6 2.9543 -2.0144 -3.4882 23 6 2.6262 -0.6734 -3.5513 24 6 2.1592 -0.0219 -2.4235 25 17 1.7391 1.6606 -2.5040 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 2.9173 -1.1205 1.0288 30 1 1.0869 0.6164 2.5525 31 1 2.7588 1.0463 2.1183 32 1 1.5321 0.7731 4.9173 33 1 3.2368 1.2152 4.6582 34 1 2.6619 1.9389 8.2229 35 1 2.2577 -2.5906 -0.2381 36 1 3.0779 -3.7515 -2.2481 37 1 3.3143 -2.5242 -4.3696 38 1 2.7296 -0.1354 -4.4820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194075813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:07:19 Heat of formation + Delta-G solvation = 28.434897 kcal Electronic energy + Delta-G solvation = -20090.845046 eV Core-core repulsion = 16958.372274 eV Total energy + Delta-G solvation = -3132.472772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92628 -37.56132 -36.63298 -35.77959 -33.85750 -32.45826 -30.99422 -30.54177 -29.03170 -26.38577 -23.98424 -23.22274 -22.21371 -21.82999 -20.43001 -17.58008 -16.75610 -16.49854 -16.09212 -15.80770 -15.08915 -14.67638 -14.39175 -14.15331 -13.97670 -13.50051 -13.27088 -12.94841 -12.76210 -12.39931 -12.19507 -12.06082 -11.89820 -11.72291 -11.70632 -11.60726 -11.34666 -11.16995 -10.98369 -10.74009 -10.67240 -10.53789 -10.26465 -9.56299 -9.26216 -9.12033 -8.89202 -8.45940 -8.40778 -6.09687 -4.12982 0.91058 1.03230 1.93272 3.31109 3.35382 3.38644 3.39128 3.55481 3.60749 4.08391 4.39932 4.41641 4.63966 4.75836 4.78953 5.04340 5.11458 5.25652 5.28243 5.28612 5.45446 5.55365 5.66179 5.71433 5.77841 5.87777 5.98591 6.08827 6.12529 6.19706 6.27469 6.38289 6.53286 6.57083 7.05856 7.35887 7.43278 7.52548 7.85014 8.22628 8.38452 8.91294 9.52440 11.01162 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.003249 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.979385 B = 8616.639698 C = 9197.416646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.119 3.881 3 H 0.062 0.938 4 N -0.686 5.686 5 C 0.066 3.934 6 C 0.007 3.993 7 H 0.112 0.888 8 C 0.240 3.760 9 N -0.476 5.476 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.076 4.076 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.032 4.032 25 Cl -0.068 7.068 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.340 0.660 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.144 0.856 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -3.459 -22.064 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.080 0.920 4 N -0.318 5.318 5 C -0.063 4.063 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.076 4.076 9 N -0.153 5.153 10 C -0.006 4.006 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.077 4.077 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.060 4.060 25 Cl -0.039 7.039 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.127 -3.896 -22.036 22.755 hybrid contribution 0.702 0.351 0.771 1.100 sum -3.425 -3.544 -21.265 21.829 Atomic orbital electron populations 1.21742 0.92811 1.02700 1.01825 1.20493 0.96629 0.95730 0.86228 0.91998 1.60763 1.33389 1.33597 1.04059 1.22152 1.01927 0.93396 0.88868 1.19331 0.83648 1.01565 0.96932 0.87052 1.29313 0.95169 0.91989 0.91178 1.81012 1.12613 1.10639 1.11010 1.19158 0.98923 0.93741 0.88762 1.21105 1.46787 0.96658 0.91995 0.92552 1.24950 0.95017 0.94869 0.99104 1.69927 1.48181 1.09920 1.24983 0.86654 0.79252 0.79905 0.82263 1.20274 1.21197 1.20000 1.19918 0.99253 0.94481 0.94034 1.21173 0.97457 0.93183 0.99535 1.21311 0.98782 1.00443 0.92727 1.21120 0.99997 0.93658 0.98402 1.21012 0.99767 0.95008 0.97339 1.20813 1.03959 0.85838 0.95342 1.98370 1.91910 1.15235 1.98427 0.92562 0.91767 0.91584 0.84115 0.88809 0.94532 0.94168 0.95762 0.92732 0.83848 0.85330 0.85278 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.40 37.16 0.35 -1.07 16 2 C 0.12 1.39 2.33 -68.86 -0.16 1.23 16 3 H 0.06 0.77 6.80 -51.93 -0.35 0.42 16 4 N -0.69 -8.88 5.56 -107.95 -0.60 -9.48 16 5 C 0.07 0.97 4.92 -3.83 -0.02 0.95 16 6 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 7 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 8 C 0.24 4.81 12.97 -20.78 -0.27 4.54 16 9 N -0.48 -10.30 18.53 42.13 0.78 -9.52 16 10 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 11 C -0.53 -13.97 8.60 -34.44 -0.30 -14.27 16 12 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 15 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.08 -0.85 4.93 -104.59 -0.52 -1.37 16 20 C -0.10 -1.00 8.86 -39.59 -0.35 -1.35 16 21 C -0.11 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.11 -0.94 10.05 -39.59 -0.40 -1.34 16 23 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 24 C -0.03 -0.35 6.31 -39.50 -0.25 -0.60 16 25 Cl -0.07 -0.72 27.13 -51.86 -1.41 -2.12 16 26 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 29 H 0.34 4.61 6.34 -39.29 -0.25 4.36 16 30 H 0.09 1.28 7.44 -51.93 -0.39 0.89 16 31 H 0.04 0.55 8.05 -51.92 -0.42 0.13 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.14 1.49 6.97 -52.49 -0.37 1.13 16 36 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -29.38 339.48 -8.60 -37.98 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.06 Total: 0.48 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -3.14 Total: -13.95 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.92 Total: -43.75 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.41 Total: -2.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.38 -8.60 -37.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194075813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.417 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds