Wall clock time and date at job start Fri Apr 10 2020 15:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36935 * 120.00052 * 2 1 4 4 H 1.08003 * 120.00678 * 202.36647 * 3 2 1 5 5 C 1.38819 * 119.99925 * 22.37358 * 3 2 1 6 6 N 1.31620 * 119.99822 * 11.11913 * 5 3 2 7 7 Si 1.86796 * 120.00072 * 191.12643 * 5 3 2 8 8 H 1.48504 * 109.47119 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47279 * 119.99629 * 7 5 3 10 10 H 1.48498 * 109.47016 * 239.99781 * 7 5 3 11 11 S 1.65605 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.42092 * 106.40240 * 156.45746 * 11 2 1 13 13 O 1.42100 * 106.39927 * 23.53501 * 11 2 1 14 14 C 1.76202 * 107.21348 * 269.99599 * 11 2 1 15 15 C 1.38245 * 120.00286 * 115.27884 * 14 11 2 16 16 C 1.38221 * 120.04328 * 180.24726 * 15 14 11 17 17 C 1.38252 * 120.06693 * 359.74926 * 16 15 14 18 18 C 1.38282 * 120.01230 * 359.97198 * 17 16 15 19 19 Cl 1.73598 * 120.02476 * 180.02562 * 18 17 16 20 20 C 1.38401 * 120.00723 * 294.99835 * 14 11 2 21 21 F 1.35097 * 120.02979 * 0.02683 * 20 14 11 22 22 H 1.09000 * 109.47088 * 274.21393 * 1 2 3 23 23 H 1.09001 * 109.47326 * 34.21072 * 1 2 3 24 24 H 1.08998 * 109.47015 * 154.21345 * 1 2 3 25 25 H 0.96993 * 119.99928 * 180.02562 * 6 5 3 26 26 H 1.08001 * 119.97683 * 359.97438 * 15 14 11 27 27 H 1.08008 * 119.96180 * 179.72224 * 16 15 14 28 28 H 1.07996 * 119.99627 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1687 1.2212 -0.3559 5 6 1.5339 2.3428 0.4576 6 7 0.3823 2.2692 1.0907 7 14 2.3396 4.0042 0.1747 8 1 3.6192 3.8160 -0.5550 9 1 1.4331 4.8637 -0.6282 10 1 2.6074 4.6536 1.4831 11 16 2.2930 -1.4342 -0.0006 12 8 3.5758 -1.1565 -0.5450 13 8 1.4113 -2.4063 -0.5454 14 6 2.5538 -1.8864 1.6822 15 6 1.9628 -3.0280 2.1908 16 6 2.1627 -3.3808 3.5122 17 6 2.9581 -2.5957 4.3261 18 6 3.5551 -1.4564 3.8184 19 17 4.5544 -0.4706 4.8399 20 6 3.3551 -1.1020 2.4936 21 9 3.9372 0.0109 1.9960 22 1 -0.3633 0.0755 1.0249 23 1 -0.3634 0.8499 -0.5778 24 1 -0.3633 -0.9253 -0.4470 25 1 -0.0481 3.0775 1.4101 26 1 1.3409 -3.6422 1.5564 27 1 1.6967 -4.2706 3.9094 28 1 3.1131 -2.8722 5.3585 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334174607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:11:14 Heat of formation + Delta-G solvation = -84.454693 kcal Electronic energy + Delta-G solvation = -19973.688779 eV Core-core repulsion = 16478.919543 eV Total energy + Delta-G solvation = -3494.769237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.008 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.45531 -38.64086 -36.31899 -35.82115 -35.77156 -34.43897 -31.61153 -30.80345 -30.11279 -26.55836 -23.64803 -23.08305 -22.45156 -18.64920 -17.97866 -17.10694 -16.74302 -16.33579 -16.02591 -15.24876 -14.79360 -14.63112 -14.31553 -14.24276 -13.31606 -12.98173 -12.85988 -12.73172 -12.27507 -11.93314 -11.52461 -11.43858 -11.33780 -11.12895 -11.06821 -10.98311 -10.73284 -10.62598 -10.28850 -10.18537 -9.89770 -9.38326 -8.97785 -8.41298 -8.21057 -6.69398 -4.11254 1.01715 1.27775 1.65777 2.19924 3.07032 3.12575 3.20195 3.53937 3.91632 4.33371 4.42037 4.68076 4.91567 4.94704 5.18564 5.28222 5.58875 5.81830 5.96414 6.18876 6.29041 6.34929 6.39965 6.78271 6.91910 7.01626 7.15017 7.33934 8.18017 8.50595 8.99427 10.25147 Molecular weight = 293.01amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.008921 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.436091 B = 3137.940087 C = 4214.344315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.793 5.793 3 C -0.221 4.221 4 H 0.122 0.878 5 C 0.031 3.969 6 N -0.825 5.825 7 Si 0.929 3.071 8 H -0.258 1.258 9 H -0.274 1.274 10 H -0.275 1.275 11 S 2.501 3.499 12 O -0.977 6.977 13 O -1.000 7.000 14 C -0.683 4.683 15 C -0.009 4.009 16 C -0.150 4.150 17 C -0.059 4.059 18 C -0.100 4.100 19 Cl -0.061 7.061 20 C 0.209 3.791 21 F -0.101 7.101 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.277 0.723 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -4.105 6.254 7.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.616 5.616 3 C -0.372 4.372 4 H 0.139 0.861 5 C -0.183 4.183 6 N -0.465 5.465 7 Si 0.754 3.246 8 H -0.182 1.182 9 H -0.200 1.200 10 H -0.201 1.201 11 S 2.597 3.403 12 O -0.966 6.966 13 O -0.989 6.989 14 C -0.757 4.757 15 C -0.028 4.028 16 C -0.169 4.169 17 C -0.078 4.078 18 C -0.128 4.128 19 Cl -0.032 7.032 20 C 0.187 3.813 21 F -0.079 7.079 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.154 0.846 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.975 -4.728 5.771 7.524 hybrid contribution 0.462 1.039 1.139 1.609 sum 1.437 -3.689 6.910 7.964 Atomic orbital electron populations 1.21381 0.78919 1.00264 1.02073 1.54456 1.13361 1.18846 1.74952 1.20294 1.01243 0.82747 1.32892 0.86097 1.25862 0.96395 1.01451 0.94594 1.70107 1.14976 1.30611 1.30762 0.85782 0.79961 0.80103 0.78798 1.18186 1.19984 1.20051 1.13607 0.74234 0.74893 0.77569 1.93368 1.41356 1.84283 1.77588 1.93304 1.65128 1.62046 1.78458 1.32812 1.06384 1.03378 1.33163 1.20940 0.93842 0.92979 0.95049 1.21231 1.00635 1.00842 0.94222 1.20984 0.94780 0.91860 1.00214 1.21070 1.03046 0.97558 0.91166 1.98353 1.67978 1.69726 1.67181 1.16790 0.91352 0.83534 0.89584 1.91671 1.81003 1.48006 1.87192 0.92816 0.90457 0.93457 0.91207 0.83562 0.84601 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.62 8.92 59.84 0.53 3.16 15 2 N -0.79 -19.05 3.31 -66.69 -0.22 -19.27 15 3 C -0.22 -5.44 8.24 -15.06 -0.12 -5.56 15 4 H 0.12 3.04 7.16 -52.48 -0.38 2.66 15 5 C 0.03 0.72 5.13 -17.43 -0.09 0.63 15 6 N -0.82 -19.46 10.57 55.49 0.59 -18.87 15 7 Si 0.93 18.47 29.57 -169.99 -5.03 13.45 15 8 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 9 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 10 H -0.28 -5.48 7.11 56.52 0.40 -5.07 15 11 S 2.50 59.55 5.30 -107.50 -0.57 58.98 15 12 O -0.98 -25.75 16.22 -57.17 -0.93 -26.68 15 13 O -1.00 -24.22 15.53 -57.17 -0.89 -25.11 15 14 C -0.68 -14.51 5.91 -39.52 -0.23 -14.74 15 15 C -0.01 -0.16 9.55 -39.58 -0.38 -0.54 15 16 C -0.15 -2.18 10.04 -39.58 -0.40 -2.57 15 17 C -0.06 -0.88 9.83 -39.56 -0.39 -1.27 15 18 C -0.10 -1.81 6.33 -39.43 -0.25 -2.05 15 19 Cl -0.06 -0.99 28.62 -51.86 -1.48 -2.48 15 20 C 0.21 4.45 7.19 -39.39 -0.28 4.17 15 21 F -0.10 -2.33 14.64 2.25 0.03 -2.30 15 22 H 0.05 1.19 7.42 -51.93 -0.39 0.80 15 23 H 0.08 1.69 7.18 -51.93 -0.37 1.32 15 24 H 0.05 0.96 6.93 -51.93 -0.36 0.60 15 25 H 0.28 6.09 8.31 -40.82 -0.34 5.75 15 26 H 0.15 2.39 7.33 -52.49 -0.38 2.01 15 27 H 0.14 1.43 8.06 -52.48 -0.42 1.00 15 28 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 LS Contribution 276.67 15.07 4.17 4.17 Total: -1.00 -28.54 276.67 -7.80 -36.34 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -1.86 Total: 0.56 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -1.61 Total: -18.78 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.37 Total: -38.14 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -1.82 Total: -51.79 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.03 Total: -2.30 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 59.55 SS G_CDS: -0.57 Total: 58.98 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.48 Total: -2.48 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.54 -7.80 -36.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334174607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.120 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds