Wall clock time and date at job start Fri Apr 10 2020 15:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36231 * 116.99931 * 2 1 4 4 C 1.38676 * 122.58977 * 0.19462 * 3 2 1 5 5 C 1.33431 * 114.88643 * 180.31697 * 4 3 2 6 6 S 1.75866 * 109.65814 * 359.73157 * 5 4 3 7 7 C 1.33632 * 122.58783 * 180.02562 * 3 2 1 8 8 C 1.50698 * 125.19359 * 359.97415 * 7 3 2 9 9 N 1.46894 * 109.46996 * 96.06775 * 8 7 3 10 10 C 1.46899 * 110.99962 * 159.99886 * 9 8 7 11 11 C 1.50708 * 109.47197 * 209.12170 * 10 9 8 12 12 H 1.07997 * 119.99617 * 357.24328 * 11 10 9 13 13 C 1.37874 * 120.00119 * 177.23896 * 11 10 9 14 14 N 1.31516 * 119.99929 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99969 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47209 * 60.00228 * 15 13 11 17 17 H 1.48499 * 109.47230 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47179 * 300.00038 * 15 13 11 19 19 C 1.46905 * 111.00018 * 283.94859 * 9 8 7 20 20 C 1.54962 * 110.92735 * 186.38397 * 19 9 8 21 21 C 1.54266 * 104.16117 * 156.29632 * 20 19 9 22 22 C 1.53872 * 106.63874 * 336.44221 * 21 20 19 23 23 C 1.54262 * 106.60148 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47131 * 300.00320 * 1 2 3 25 25 H 1.08998 * 109.47067 * 60.00006 * 1 2 3 26 26 H 1.08992 * 109.46799 * 180.02562 * 1 2 3 27 27 H 1.08004 * 122.55378 * 0.05088 * 4 3 2 28 28 H 1.07997 * 125.17243 * 179.77129 * 5 4 3 29 29 H 1.09004 * 109.47256 * 336.06399 * 8 7 3 30 30 H 1.08998 * 109.46762 * 216.06575 * 8 7 3 31 31 H 1.08998 * 109.47032 * 329.12184 * 10 9 8 32 32 H 1.09003 * 109.47529 * 89.12317 * 10 9 8 33 33 H 0.96999 * 119.99730 * 180.02562 * 14 13 11 34 34 H 1.09000 * 110.67042 * 63.07361 * 19 9 8 35 35 H 1.08996 * 110.47454 * 37.64117 * 20 19 9 36 36 H 1.08998 * 110.52668 * 274.97909 * 20 19 9 37 37 H 1.09004 * 110.02858 * 217.13576 * 21 20 19 38 38 H 1.09003 * 110.03134 * 95.75409 * 21 20 19 39 39 H 1.09007 * 110.02973 * 119.26483 * 22 21 20 40 40 H 1.08996 * 110.03487 * 240.63889 * 22 21 20 41 41 H 1.09000 * 110.48776 * 142.28390 * 23 22 21 42 42 H 1.09003 * 110.48645 * 264.79863 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4098 0.0040 5 6 2.1051 3.5068 -0.0033 6 16 3.8035 3.0503 -0.0082 7 6 3.3774 1.3440 -0.0005 8 6 4.3618 0.2029 -0.0006 9 7 4.7919 -0.0726 -1.3778 10 6 6.0587 -0.8162 -1.3949 11 6 6.8203 -0.4822 -2.6518 12 1 6.3853 0.1781 -3.3874 13 6 8.0724 -1.0197 -2.8625 14 7 8.6019 -1.8242 -1.9670 15 14 9.0166 -0.6053 -4.4200 16 1 9.2397 0.8613 -4.4882 17 1 10.3261 -1.3055 -4.4062 18 1 8.2345 -1.0426 -5.6043 19 6 3.7490 -0.7923 -2.1211 20 6 4.2621 -1.2221 -3.5187 21 6 3.3668 -2.4199 -3.8975 22 6 2.8359 -3.0077 -2.5782 23 6 3.4274 -2.1472 -1.4428 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2662 2.4502 0.0081 28 1 1.7335 4.5208 -0.0052 29 1 3.8880 -0.6857 0.4168 30 1 5.2283 0.4706 0.6041 31 1 6.6542 -0.5394 -0.5249 32 1 5.8524 -1.8862 -1.3686 33 1 9.4829 -2.2020 -2.1151 34 1 2.8502 -0.1823 -2.2111 35 1 5.3066 -1.5289 -3.4637 36 1 4.1390 -0.4116 -4.2370 37 1 3.9516 -3.1690 -4.4314 38 1 2.5359 -2.0836 -4.5176 39 1 1.7473 -2.9559 -2.5578 40 1 3.1621 -4.0423 -2.4723 41 1 2.6955 -2.0108 -0.6466 42 1 4.3356 -2.6050 -1.0506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141324607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:16:20 Heat of formation + Delta-G solvation = 1.939894 kcal Electronic energy + Delta-G solvation = -22777.354678 eV Core-core repulsion = 19656.579657 eV Total energy + Delta-G solvation = -3120.775021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70393 -38.31087 -35.67429 -34.40495 -32.63410 -30.33934 -28.15702 -27.35929 -27.12143 -25.95789 -24.29748 -22.50377 -21.81970 -19.64933 -19.24618 -18.49530 -17.13435 -16.36879 -16.11649 -15.82472 -15.38452 -14.86154 -14.76235 -14.44701 -13.78726 -13.60448 -13.22592 -12.79409 -12.63534 -12.49742 -12.44726 -11.93839 -11.60968 -11.24099 -11.03054 -10.97198 -10.84953 -10.70609 -10.64012 -10.51897 -10.45433 -10.26331 -10.06377 -9.94134 -9.75922 -9.22318 -9.15886 -8.36964 -8.30387 -7.68607 -7.05978 -5.95802 -3.92848 1.23416 1.88672 2.21552 2.92621 3.37724 3.41703 3.45280 3.80127 4.47915 4.87039 5.01582 5.17502 5.19818 5.23367 5.34911 5.39170 5.45042 5.47521 5.64136 5.73051 5.91459 5.94228 6.12017 6.17121 6.22756 6.27038 6.33595 6.35807 6.48095 6.55604 6.61966 6.64698 6.75467 6.92816 7.11602 7.28302 7.45107 7.52479 7.67812 7.92403 8.21648 8.37031 8.63879 9.12183 9.66255 11.13547 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.005775 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.903076 B = 4847.365286 C = 5978.741772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.082 3.918 4 C -0.187 4.187 5 C -0.214 4.214 6 S 0.155 5.845 7 C -0.188 4.188 8 C 0.128 3.872 9 N -0.524 5.524 10 C 0.187 3.813 11 C -0.491 4.491 12 H 0.066 0.934 13 C 0.053 3.947 14 N -0.899 5.899 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.277 1.277 19 C 0.103 3.897 20 C -0.138 4.138 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.157 4.157 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.162 0.838 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 5.131 4.105 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.214 6.214 3 C 0.027 3.973 4 C -0.220 4.220 5 C -0.351 4.351 6 S 0.418 5.582 7 C -0.307 4.307 8 C -0.002 4.002 9 N -0.247 5.247 10 C 0.062 3.938 11 C -0.530 4.530 12 H 0.084 0.916 13 C -0.148 4.148 14 N -0.539 5.539 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.007 4.007 20 C -0.175 4.175 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.197 4.197 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.154 0.846 28 H 0.179 0.821 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.050 6.096 3.902 15.805 hybrid contribution -1.332 -1.142 -0.470 1.816 sum -15.382 4.955 3.431 16.521 Atomic orbital electron populations 1.22926 0.79565 1.03274 1.00578 1.86204 1.20013 1.25124 1.90058 1.17586 0.90995 0.84884 1.03803 1.20100 1.00932 0.91719 1.09222 1.25391 0.97655 1.02200 1.09836 1.84354 1.04116 0.97829 1.71872 1.23757 0.95048 0.98585 1.13284 1.20386 0.94831 0.92415 0.92548 1.62238 1.04305 1.48139 1.09968 1.19880 0.84194 0.92017 0.97722 1.21156 1.00213 1.27397 1.04230 0.91579 1.24976 0.97432 0.95576 0.96776 1.69947 1.17000 1.32193 1.34743 0.86641 0.79018 0.78564 0.83705 1.20254 1.21532 1.20255 1.22418 0.93522 0.90974 0.93751 1.23040 1.03845 0.95727 0.94891 1.22139 0.98709 0.98665 0.96653 1.21959 0.98909 0.98779 0.95540 1.22997 1.00694 0.98069 0.97895 0.93445 0.93283 0.88814 0.84605 0.82083 0.93023 0.90720 0.95841 0.97605 0.92998 0.91629 0.85625 0.93091 0.92588 0.93451 0.93149 0.92895 0.92037 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.92 101.05 1.00 1.33 16 2 O -0.30 -4.42 8.70 -20.48 -0.18 -4.60 16 3 C 0.08 1.27 6.02 -41.03 -0.25 1.02 16 4 C -0.19 -2.40 9.16 -41.10 -0.38 -2.78 16 5 C -0.21 -2.64 11.22 29.05 0.33 -2.32 16 6 S 0.16 2.31 23.32 -107.50 -2.51 -0.20 16 7 C -0.19 -3.21 5.60 -35.92 -0.20 -3.41 16 8 C 0.13 2.46 5.26 -4.98 -0.03 2.43 16 9 N -0.52 -11.35 4.44 -227.08 -1.01 -12.36 16 10 C 0.19 4.73 4.23 -4.97 -0.02 4.70 16 11 C -0.49 -13.37 6.48 -34.44 -0.22 -13.59 16 12 H 0.07 1.81 7.14 -52.49 -0.37 1.44 16 13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.10 2.04 2.92 -65.67 -0.19 1.85 16 20 C -0.14 -2.83 5.26 -25.03 -0.13 -2.96 16 21 C -0.12 -2.14 6.80 -25.61 -0.17 -2.32 16 22 C -0.11 -1.87 6.80 -25.62 -0.17 -2.05 16 23 C -0.16 -2.90 4.97 -25.07 -0.12 -3.03 16 24 H 0.05 0.41 7.84 -51.93 -0.41 0.00 16 25 H 0.05 0.46 7.85 -51.93 -0.41 0.05 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.14 1.39 6.91 -52.48 -0.36 1.03 16 28 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.05 0.99 6.04 -51.93 -0.31 0.68 16 30 H 0.07 1.45 7.51 -51.93 -0.39 1.06 16 31 H 0.02 0.64 7.42 -51.93 -0.39 0.26 16 32 H 0.01 0.17 5.57 -51.93 -0.29 -0.12 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.31 6.99 -51.93 -0.36 0.95 16 35 H 0.13 3.03 4.44 -51.93 -0.23 2.80 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.08 6.49 -51.93 -0.34 0.74 16 42 H 0.07 1.44 6.00 -51.93 -0.31 1.13 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -29.37 336.15 -9.84 -39.21 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.27 Total: 1.59 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -0.66 Total: -19.73 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.27 Total: -37.88 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.18 Total: -4.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.51 Total: -0.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.37 -9.84 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141324607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.154 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds