Wall clock time and date at job start Fri Apr 10 2020 15:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47248 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47351 * 174.63723 * 6 5 4 8 8 H 1.09002 * 109.46590 * 305.67316 * 7 6 5 9 9 C 1.53000 * 109.47222 * 185.67061 * 7 6 5 10 10 C 1.52998 * 109.46606 * 174.75646 * 9 7 6 11 11 C 1.53002 * 109.46996 * 185.05271 * 10 9 7 12 12 N 1.46897 * 109.46978 * 65.67027 * 7 6 5 13 13 C 1.46899 * 111.00452 * 255.06189 * 12 7 6 14 14 H 1.09001 * 109.41138 * 23.59482 * 13 12 7 15 15 C 1.52952 * 109.41832 * 143.45575 * 13 12 7 16 16 C 1.53226 * 109.40830 * 183.70656 * 15 13 12 17 17 C 1.51272 * 108.53855 * 305.37414 * 16 15 13 18 18 C 1.37874 * 120.85185 * 231.36945 * 17 16 15 19 19 N 1.31516 * 119.99942 * 359.97438 * 18 17 16 20 20 Si 1.86803 * 120.00095 * 179.97438 * 18 17 16 21 21 H 1.48492 * 109.47010 * 90.00184 * 20 18 17 22 22 H 1.48505 * 109.46897 * 209.99968 * 20 18 17 23 23 H 1.48502 * 109.47065 * 329.99782 * 20 18 17 24 24 C 1.51273 * 118.29864 * 51.34163 * 17 16 15 25 25 C 1.52967 * 109.41333 * 263.81279 * 13 12 7 26 26 H 1.09002 * 109.47230 * 60.00317 * 1 2 3 27 27 H 1.09007 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46910 * 299.99569 * 1 2 3 29 29 H 1.09003 * 109.46883 * 239.99987 * 2 1 3 30 30 H 1.08995 * 109.46893 * 120.00489 * 2 1 3 31 31 H 1.09005 * 109.46926 * 59.99775 * 3 2 1 32 32 H 1.08998 * 109.47307 * 300.00465 * 3 2 1 33 33 H 1.08999 * 109.47447 * 60.00517 * 4 3 2 34 34 H 1.09006 * 109.47262 * 300.00167 * 4 3 2 35 35 H 1.08999 * 109.46513 * 59.99898 * 5 4 3 36 36 H 1.08994 * 109.46783 * 300.00225 * 5 4 3 37 37 H 1.09001 * 109.47201 * 54.63668 * 6 5 4 38 38 H 1.09005 * 109.47220 * 294.63934 * 6 5 4 39 39 H 1.08989 * 109.47112 * 294.75512 * 9 7 6 40 40 H 1.08993 * 109.46623 * 54.76215 * 9 7 6 41 41 H 1.09004 * 109.47501 * 305.04670 * 10 9 7 42 42 H 1.08993 * 109.47569 * 65.05098 * 10 9 7 43 43 H 1.09008 * 109.46966 * 299.99881 * 11 10 9 44 44 H 1.09001 * 109.47584 * 59.99935 * 11 10 9 45 45 H 1.09001 * 109.47125 * 180.02562 * 11 10 9 46 46 H 1.00905 * 111.00502 * 19.01565 * 12 7 6 47 47 H 1.09002 * 109.48348 * 63.72690 * 15 13 12 48 48 H 1.09008 * 109.49431 * 303.69475 * 15 13 12 49 49 H 1.09006 * 109.62627 * 65.08659 * 16 15 13 50 50 H 1.08999 * 109.63014 * 185.66140 * 16 15 13 51 51 H 0.96996 * 119.99776 * 179.97438 * 19 18 17 52 52 H 1.09001 * 109.62123 * 188.94238 * 24 17 16 53 53 H 1.08997 * 109.78398 * 68.46688 * 24 17 16 54 54 H 1.08992 * 109.47690 * 296.26772 * 25 13 12 55 55 H 1.08998 * 109.48431 * 56.31158 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8850 -0.0013 7 6 6.1199 4.3212 -0.1355 8 1 5.6753 4.7837 -1.0166 9 6 7.6432 4.3103 -0.2789 10 6 8.1406 5.7327 -0.5437 11 6 9.6466 5.7047 -0.8120 12 7 5.7462 5.0873 1.0609 13 6 4.6303 5.9988 0.7752 14 1 4.0695 5.6273 -0.0825 15 6 3.7079 6.0708 1.9932 16 6 2.4959 6.9482 1.6629 17 6 2.9929 8.2918 1.1771 18 6 2.5199 9.4628 1.7303 19 7 1.6246 9.4207 2.6927 20 14 3.1506 11.1091 1.1127 21 1 2.2922 11.5809 -0.0033 22 1 3.1138 12.0996 2.2185 23 1 4.5473 10.9554 0.6322 24 6 4.0227 8.3178 0.0693 25 6 5.1793 7.3907 0.4575 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 3.7170 3.3982 0.8905 36 1 3.7163 3.3993 -0.8895 37 1 5.9726 2.2908 -0.8401 38 1 5.9741 2.4558 0.9322 39 1 8.0919 3.9337 0.6402 40 1 7.9250 3.6659 -1.1116 41 1 7.6245 6.1424 -1.4120 42 1 7.9382 6.3565 0.3269 43 1 10.1628 5.2950 0.0564 44 1 9.8491 5.0810 -1.6827 45 1 10.0011 6.7181 -1.0002 46 1 5.5231 4.4722 1.8291 47 1 4.2500 6.5018 2.8349 48 1 3.3703 5.0676 2.2536 49 1 1.9021 6.4733 0.8817 50 1 1.8878 7.0843 2.5571 51 1 1.2921 10.2445 3.0821 52 1 4.3955 9.3338 -0.0601 53 1 3.5725 7.9717 -0.8611 54 1 5.6866 7.7904 1.3355 55 1 5.8846 7.3230 -0.3708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172378708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:17:05 Heat of formation + Delta-G solvation = -81.871875 kcal Electronic energy + Delta-G solvation = -25362.437261 eV Core-core repulsion = 22202.774301 eV Total energy + Delta-G solvation = -3159.662959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 295.257 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.95178 -37.80864 -36.82537 -34.86146 -34.26439 -32.82949 -31.48155 -30.66508 -28.63373 -27.68203 -25.31133 -23.59853 -23.26721 -22.68706 -21.95783 -21.58251 -21.18522 -20.69738 -17.98587 -17.08545 -16.52126 -16.42088 -16.09835 -15.41806 -15.32560 -15.15647 -14.86122 -14.71360 -14.44015 -14.32344 -14.09451 -13.82453 -13.64214 -13.61328 -13.33472 -13.23376 -12.81729 -12.72326 -12.59133 -12.48273 -12.37405 -12.10735 -12.00685 -11.95298 -11.83053 -11.80686 -11.69560 -11.54331 -11.39968 -11.36585 -11.31496 -11.28652 -11.01465 -10.69474 -10.53239 -10.42618 -9.05719 -8.15524 -6.08716 1.37666 1.40422 1.48880 2.41509 3.08757 3.42088 3.64674 3.96948 4.06118 4.11511 4.16385 4.22902 4.28574 4.34547 4.35356 4.46830 4.49740 4.57036 4.63139 4.68535 4.73306 4.80371 4.82075 4.90194 4.93328 4.94371 4.98298 5.02687 5.04603 5.10742 5.13462 5.14641 5.15900 5.17304 5.23172 5.25138 5.27484 5.32707 5.33903 5.36629 5.42793 5.46103 5.49259 5.55142 5.58033 5.64726 5.65533 5.70005 5.79208 5.91835 6.38621 6.42251 6.72769 6.97596 7.48848 8.95591 Molecular weight = 295.26amu Principal moments of inertia in cm(-1) A = 0.009168 B = 0.004808 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.532143 B = 5822.803565 C = 8505.870136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.124 4.124 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.130 4.130 7 C 0.086 3.914 8 H 0.053 0.947 9 C -0.094 4.094 10 C -0.118 4.118 11 C -0.147 4.147 12 N -0.679 5.679 13 C 0.120 3.880 14 H 0.032 0.968 15 C -0.100 4.100 16 C 0.010 3.990 17 C -0.492 4.492 18 C 0.019 3.981 19 N -0.935 5.935 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.250 1.250 24 C -0.025 4.025 25 C -0.082 4.082 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.339 0.661 47 H 0.039 0.961 48 H 0.045 0.955 49 H -0.006 1.006 50 H 0.021 0.979 51 H 0.261 0.739 52 H 0.031 0.969 53 H 0.015 0.985 54 H 0.038 0.962 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 -17.355 -7.194 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.162 4.162 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.169 4.169 7 C -0.024 4.024 8 H 0.071 0.929 9 C -0.132 4.132 10 C -0.155 4.155 11 C -0.204 4.204 12 N -0.310 5.310 13 C 0.011 3.989 14 H 0.050 0.950 15 C -0.138 4.138 16 C -0.028 4.028 17 C -0.512 4.512 18 C -0.179 4.179 19 N -0.575 5.575 20 Si 0.765 3.235 21 H -0.201 1.201 22 H -0.219 1.219 23 H -0.175 1.175 24 C -0.063 4.063 25 C -0.121 4.121 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.158 0.842 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.013 0.987 50 H 0.040 0.960 51 H 0.070 0.930 52 H 0.050 0.950 53 H 0.033 0.967 54 H 0.057 0.943 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.533 -16.774 -7.176 20.584 hybrid contribution -1.184 0.789 0.092 1.426 sum 8.348 -15.985 -7.084 19.375 Atomic orbital electron populations 1.21807 0.95983 1.01977 1.01553 1.21507 0.95852 0.96097 1.02319 1.21640 0.96000 0.97278 1.01246 1.21521 0.94826 0.95851 1.02393 1.21636 0.96009 0.97320 1.00961 1.22138 0.94786 0.96818 1.03118 1.21785 0.96140 0.92246 0.92266 0.92876 1.21514 0.93734 0.96539 1.01457 1.21418 0.95731 0.97650 1.00738 1.21757 0.95690 1.01388 1.01602 1.60607 1.40080 1.22591 1.07760 1.21157 0.89251 0.92780 0.95721 0.95024 1.21690 0.97238 0.97589 0.97292 1.19288 0.93841 0.93748 0.95893 1.20658 1.21242 0.91854 1.17421 1.25616 0.95261 1.01932 0.95081 1.69981 1.31805 1.28359 1.27365 0.85838 0.80032 0.79866 0.77770 1.20084 1.21927 1.17451 1.19875 0.94413 0.96508 0.95527 1.21423 0.96647 0.94857 0.99149 0.93046 0.91776 0.93349 0.91401 0.91709 0.93359 0.92928 0.91217 0.91567 0.93536 0.93565 0.90271 0.91003 0.91874 0.91084 0.93767 0.92788 0.92642 0.92215 0.93284 0.84209 0.94244 0.93613 0.98728 0.95980 0.92972 0.95013 0.96688 0.94338 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.03 5.93 30.59 0.18 -1.84 16 3 C -0.12 -2.54 5.21 30.59 0.16 -2.38 16 4 C -0.11 -2.05 5.21 30.60 0.16 -1.89 16 5 C -0.12 -2.77 4.24 30.60 0.13 -2.64 16 6 C -0.13 -2.59 4.51 30.59 0.14 -2.45 16 7 C 0.09 2.07 2.10 44.92 0.09 2.16 16 8 H 0.05 1.47 7.28 -2.39 -0.02 1.46 16 9 C -0.09 -2.00 4.89 30.59 0.15 -1.85 16 10 C -0.12 -2.81 5.21 30.59 0.16 -2.66 16 11 C -0.15 -2.87 9.91 71.98 0.71 -2.16 16 12 N -0.68 -19.94 5.51 -469.61 -2.59 -22.52 16 13 C 0.12 4.42 1.57 44.89 0.07 4.49 16 14 H 0.03 1.21 6.79 -2.39 -0.02 1.20 16 15 C -0.10 -4.19 5.13 30.65 0.16 -4.03 16 16 C 0.01 0.53 5.97 30.11 0.18 0.71 16 17 C -0.49 -26.55 5.51 -16.17 -0.09 -26.64 16 18 C 0.02 1.05 5.46 84.65 0.46 1.51 16 19 N -0.93 -56.31 12.73 21.45 0.27 -56.03 16 20 Si 0.94 44.36 27.53 68.60 1.89 46.25 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.25 -11.15 6.10 99.48 0.61 -10.55 16 24 C -0.03 -1.18 5.59 30.11 0.17 -1.01 16 25 C -0.08 -3.34 5.54 30.66 0.17 -3.17 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.16 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.25 6.39 -2.39 -0.02 1.23 16 36 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.34 8.04 -2.38 -0.02 1.32 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.04 1.12 7.99 -2.38 -0.02 1.10 16 42 H 0.05 1.55 7.83 -2.39 -0.02 1.53 16 43 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.34 9.48 7.26 -89.69 -0.65 8.83 16 47 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.05 1.71 7.26 -2.38 -0.02 1.69 16 49 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 50 H 0.02 1.25 7.07 -2.39 -0.02 1.23 16 51 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 52 H 0.03 1.47 4.59 -2.39 -0.01 1.46 16 53 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 55 H 0.05 1.85 7.35 -2.39 -0.02 1.83 16 Total: -1.00 -59.11 406.97 3.34 -55.77 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.04 Total: 22.29 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.72 Total: -45.75 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -2.31 Total: -78.56 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.89 Total: 46.25 kcal Total: -59.11 3.34 -55.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172378708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.098 kcal (2) G-P(sol) polarization free energy of solvation -59.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds