Wall clock time and date at job start Fri Apr 10 2020 15:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48505 * 109.47197 * 272.47811 * 3 2 1 5 5 H 1.48494 * 109.47325 * 32.47461 * 3 2 1 6 6 H 1.48499 * 109.47263 * 152.47818 * 3 2 1 7 7 C 1.37880 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99860 * 354.72008 * 7 2 1 9 9 C 1.50705 * 120.00144 * 174.72171 * 7 2 1 10 10 C 1.53001 * 115.54513 * 88.61472 * 9 7 2 11 11 S 1.81401 * 109.47069 * 65.25498 * 10 9 7 12 12 C 1.81396 * 102.99850 * 175.10018 * 11 10 9 13 13 C 1.52998 * 109.47078 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47357 * 179.97438 * 13 12 11 15 15 C 1.35896 * 117.00525 * 180.02562 * 14 13 12 16 16 C 1.38775 * 120.04044 * 359.72271 * 15 14 13 17 17 C 1.38135 * 119.99694 * 179.74613 * 16 15 14 18 18 C 1.38253 * 120.07723 * 0.53175 * 17 16 15 19 19 C 1.38473 * 120.08418 * 359.74534 * 18 17 16 20 20 F 1.35101 * 119.99477 * 179.97438 * 19 18 17 21 21 C 1.38384 * 120.00771 * 359.97438 * 19 18 17 22 22 C 1.52998 * 117.50028 * 234.28663 * 9 7 2 23 23 C 1.52990 * 117.49792 * 302.94749 * 9 7 2 24 24 H 0.97003 * 119.99973 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47345 * 305.25073 * 10 9 7 26 26 H 1.08998 * 109.46656 * 185.25216 * 10 9 7 27 27 H 1.08996 * 109.47331 * 59.99713 * 12 11 10 28 28 H 1.09001 * 109.47050 * 299.99448 * 12 11 10 29 29 H 1.08998 * 109.47854 * 300.00089 * 13 12 11 30 30 H 1.09008 * 109.47062 * 60.00248 * 13 12 11 31 31 H 1.08003 * 120.00192 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.96028 * 180.27970 * 17 16 15 33 33 H 1.07998 * 119.95890 * 179.76667 * 18 17 16 34 34 H 1.08000 * 120.04001 * 180.02562 * 21 19 18 35 35 H 1.08995 * 117.49517 * 215.00621 * 22 9 7 36 36 H 1.08998 * 117.49644 * 0.02562 * 22 9 7 37 37 H 1.09001 * 117.50083 * 359.97438 * 23 9 7 38 38 H 1.09009 * 117.49986 * 144.97176 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4442 2.0767 -1.3988 5 1 1.4738 2.6370 0.7517 6 1 3.5719 1.4255 0.6469 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 0.0870 9 6 3.5067 -1.1969 -0.1195 10 6 4.2743 -1.1008 1.2005 11 16 3.9641 -2.5891 2.1901 12 6 5.0567 -2.3631 3.6204 13 6 4.9097 -3.5554 4.5679 14 8 5.7709 -3.3776 5.6944 15 6 5.7617 -4.3552 6.6383 16 6 4.9362 -5.4602 6.4861 17 6 4.9315 -6.4559 7.4436 18 6 5.7405 -6.3478 8.5596 19 6 6.5613 -5.2438 8.7176 20 9 7.3507 -5.1398 9.8090 21 6 6.5730 -4.2471 7.7577 22 6 4.1246 -2.0408 -1.2362 23 6 4.1188 -0.5139 -1.3440 24 1 -0.4850 0.8401 0.0004 25 1 3.9404 -0.2218 1.7518 26 1 5.3414 -1.0170 0.9949 27 1 4.7843 -1.4471 4.1446 28 1 6.0901 -2.2937 3.2808 29 1 3.8763 -3.6245 4.9075 30 1 5.1820 -4.4716 4.0439 31 1 4.3007 -5.5440 5.6169 32 1 4.2921 -7.3178 7.3223 33 1 5.7325 -7.1256 9.3088 34 1 7.2133 -3.3860 7.8802 35 1 5.0779 -2.5275 -1.0304 36 1 3.4445 -2.5935 -1.8843 37 1 3.4350 -0.0628 -2.0631 38 1 5.0683 0.0044 -1.2092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853764255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:15:18 Heat of formation + Delta-G solvation = -35.363658 kcal Electronic energy + Delta-G solvation = -20061.934604 eV Core-core repulsion = 16718.363012 eV Total energy + Delta-G solvation = -3343.571592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.099 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.20462 -40.33925 -37.59192 -37.03023 -32.26215 -32.12182 -30.82511 -29.74901 -28.15395 -25.49514 -24.23765 -23.14604 -21.87560 -21.68033 -19.11296 -18.90377 -16.91304 -16.54845 -16.49982 -16.47318 -16.28364 -15.80285 -15.23202 -14.98362 -14.76139 -14.06431 -13.89040 -13.84849 -13.36436 -13.11695 -12.92397 -12.60755 -12.52031 -12.13002 -12.00669 -11.84922 -11.27090 -11.12196 -10.98076 -10.78493 -10.51388 -10.21297 -9.74388 -9.54973 -9.20172 -9.10503 -8.62947 -8.59377 -8.45347 -7.08465 -6.14021 -4.16714 0.81763 0.98389 1.78135 3.05919 3.15664 3.24068 3.28465 3.34258 3.36524 4.06371 4.37478 4.40847 4.67192 4.69616 4.76068 4.78184 4.90844 5.00493 5.06815 5.12053 5.21999 5.55353 5.56441 5.63003 5.72592 5.76316 5.85046 5.91850 5.99275 6.02348 6.06995 6.29942 6.40584 6.41824 6.66609 6.96673 7.06618 7.07026 7.67082 8.45822 8.91265 9.48646 10.97906 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.029265 B = 0.002624 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.559825 B =10667.867042 C =10714.684385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.482 4.482 8 H 0.081 0.919 9 C 0.012 3.988 10 C -0.040 4.040 11 S -0.206 6.206 12 C -0.114 4.114 13 C 0.080 3.920 14 O -0.310 6.310 15 C 0.167 3.833 16 C -0.218 4.218 17 C -0.049 4.049 18 C -0.196 4.196 19 C 0.136 3.864 20 F -0.136 7.136 21 C -0.194 4.194 22 C -0.172 4.172 23 C -0.193 4.193 24 H 0.265 0.735 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.582 -9.600 13.258 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.186 1.186 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.010 3.990 10 C -0.188 4.188 11 S 0.021 5.979 12 C -0.262 4.262 13 C 0.004 3.996 14 O -0.224 6.224 15 C 0.120 3.880 16 C -0.237 4.237 17 C -0.067 4.067 18 C -0.215 4.215 19 C 0.117 3.883 20 F -0.115 7.115 21 C -0.213 4.213 22 C -0.210 4.210 23 C -0.232 4.232 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.859 -10.131 13.103 20.371 hybrid contribution 1.247 2.015 0.346 2.395 sum 13.106 -8.116 13.449 20.458 Atomic orbital electron populations 1.69890 1.06324 1.27080 1.49816 1.24955 0.94542 0.98867 0.93934 0.86896 0.80518 0.83691 0.78424 1.20393 1.21951 1.18553 1.20202 0.86163 0.94768 1.50792 0.90058 1.19013 0.95272 1.00644 0.84092 1.23355 1.00320 0.95812 0.99354 1.86999 1.56381 1.33407 1.21066 1.23275 1.03532 1.00838 0.98555 1.22506 0.94010 0.98538 0.84515 1.86056 1.62463 1.42902 1.30936 1.18617 0.93302 0.87636 0.88465 1.21460 1.03621 0.95690 1.02946 1.20820 0.96204 0.97835 0.91836 1.21044 1.00424 0.98920 1.01144 1.17275 0.91748 0.95274 0.84008 1.91512 1.72123 1.96190 1.51634 1.20253 1.05047 1.01792 0.94224 1.22840 1.01040 0.92491 1.04605 1.23045 1.01155 0.95489 1.03542 0.92525 0.90266 0.92416 0.89445 0.89796 0.90463 0.90733 0.84326 0.84529 0.84658 0.83961 0.90673 0.89276 0.89066 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 20.92 24.95 -169.99 -4.24 16.68 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -5.81 5.69 56.52 0.32 -5.49 16 7 C -0.48 -12.96 9.07 -34.44 -0.31 -13.27 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.01 0.27 0.79 -155.66 -0.12 0.14 16 10 C -0.04 -0.79 5.42 37.16 0.20 -0.59 16 11 S -0.21 -3.70 21.43 -107.50 -2.30 -6.00 16 12 C -0.11 -1.57 6.31 37.16 0.23 -1.33 16 13 C 0.08 0.96 4.75 37.16 0.18 1.14 16 14 O -0.31 -3.86 10.14 -19.41 -0.20 -4.05 16 15 C 0.17 1.89 6.69 -39.22 -0.26 1.63 16 16 C -0.22 -2.14 9.04 -39.42 -0.36 -2.49 16 17 C -0.05 -0.40 10.04 -39.61 -0.40 -0.80 16 18 C -0.20 -1.71 10.02 -39.49 -0.40 -2.10 16 19 C 0.14 1.39 7.30 -39.44 -0.29 1.11 16 20 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 21 C -0.19 -2.09 9.97 -39.37 -0.39 -2.48 16 22 C -0.17 -3.38 9.96 -26.70 -0.27 -3.65 16 23 C -0.19 -3.92 7.67 -26.70 -0.20 -4.12 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.08 1.64 6.54 -51.92 -0.34 1.30 16 26 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.08 0.90 7.65 -51.93 -0.40 0.51 16 30 H 0.07 0.82 7.67 -51.92 -0.40 0.42 16 31 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.09 1.96 7.33 -51.93 -0.38 1.58 16 38 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -29.18 334.96 -8.65 -37.83 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.29 Total: 2.43 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -2.48 Total: -24.71 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.20 Total: -4.05 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.24 Total: 16.68 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.30 Total: -6.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.18 -8.65 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853764255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.466 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds