Wall clock time and date at job start Fri Apr 10 2020 15:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47190 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46777 * 120.00204 * 3 2 1 6 6 H 1.48505 * 109.46873 * 239.99815 * 3 2 1 7 7 C 1.38813 * 120.00176 * 180.27888 * 2 1 3 8 8 H 1.08001 * 120.00297 * 209.76799 * 7 2 1 9 9 N 1.36933 * 119.99890 * 29.76062 * 7 2 1 10 10 C 1.47417 * 125.65005 * 18.40725 * 9 7 2 11 11 C 1.55129 * 104.72499 * 155.81502 * 10 9 7 12 12 C 1.55155 * 101.48769 * 37.29632 * 11 10 9 13 13 H 1.08994 * 110.87098 * 82.76461 * 12 11 10 14 14 O 1.42899 * 110.72102 * 205.97339 * 12 11 10 15 15 C 1.35956 * 116.99532 * 206.08563 * 14 12 11 16 16 C 1.38948 * 120.06703 * 271.02326 * 15 14 12 17 17 F 1.35106 * 120.04332 * 0.03511 * 16 15 14 18 18 C 1.38289 * 119.90920 * 180.02562 * 16 15 14 19 19 C 1.38301 * 120.02893 * 0.02562 * 18 16 15 20 20 C 1.38226 * 120.12250 * 359.97438 * 19 18 16 21 21 C 1.38217 * 120.09651 * 359.76732 * 20 19 18 22 22 N 1.48013 * 120.01583 * 180.27939 * 21 20 19 23 23 O 1.21801 * 119.99954 * 2.54055 * 22 21 20 24 24 O 1.21809 * 120.00420 * 182.54466 * 22 21 20 25 25 C 1.47027 * 125.64830 * 198.71294 * 9 7 2 26 26 H 0.97004 * 120.00000 * 186.26129 * 1 2 3 27 27 H 1.08997 * 110.36991 * 274.74309 * 10 9 7 28 28 H 1.09002 * 110.36609 * 37.06814 * 10 9 7 29 29 H 1.09002 * 111.19306 * 279.19129 * 11 10 9 30 30 H 1.08997 * 110.90923 * 155.27670 * 11 10 9 31 31 H 1.08000 * 119.98645 * 179.97438 * 18 16 15 32 32 H 1.07997 * 119.93896 * 179.97438 * 19 18 16 33 33 H 1.07998 * 119.94769 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.88096 * 300.44176 * 25 9 7 35 35 H 1.09005 * 109.88451 * 61.60554 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0059 8 1 2.9833 -1.2661 0.4582 9 7 1.4610 -2.3069 -0.5999 10 6 0.3596 -2.2975 -1.5797 11 6 0.5306 -3.6166 -2.3779 12 6 0.9926 -4.5937 -1.2647 13 1 0.1386 -4.9829 -0.7106 14 8 1.7636 -5.6622 -1.8178 15 6 1.7766 -6.8345 -1.1295 16 6 2.7315 -7.0527 -0.1440 17 9 3.6484 -6.0996 0.1323 18 6 2.7420 -8.2466 0.5538 19 6 1.8035 -9.2221 0.2705 20 6 0.8530 -9.0064 -0.7096 21 6 0.8344 -7.8129 -1.4065 22 7 -0.1880 -7.5814 -2.4514 23 8 -1.0416 -8.4235 -2.6653 24 8 -0.1759 -6.5488 -3.0974 25 6 1.8679 -3.6995 -0.3614 26 1 -0.4850 -0.8351 0.0916 27 1 -0.6029 -2.2829 -1.0684 28 1 0.4502 -1.4381 -2.2440 29 1 1.2938 -3.5143 -3.1493 30 1 -0.4181 -3.9362 -2.8091 31 1 3.4839 -8.4176 1.3198 32 1 1.8133 -10.1541 0.8161 33 1 0.1217 -9.7703 -0.9288 34 1 2.9191 -3.8279 -0.6196 35 1 1.7067 -3.9588 0.6850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226009821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:15:32 Heat of formation + Delta-G solvation = -23.236935 kcal Electronic energy + Delta-G solvation = -24335.529200 eV Core-core repulsion = 20446.190248 eV Total energy + Delta-G solvation = -3889.338952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.28196 -42.29234 -40.09525 -38.49130 -36.69676 -36.28672 -32.63705 -32.07543 -30.58870 -29.14879 -27.54060 -26.73691 -24.39589 -23.26085 -22.88448 -20.74251 -20.33423 -19.65985 -18.79849 -18.26973 -17.67270 -17.51567 -17.03204 -16.70639 -16.21618 -15.76948 -15.03190 -14.74516 -14.17608 -13.94730 -13.48785 -13.27738 -13.13560 -12.86263 -12.67007 -12.34093 -12.17901 -11.59342 -11.49231 -11.15003 -11.10665 -10.87086 -10.70959 -10.57176 -10.14711 -10.03161 -9.99497 -9.84546 -9.54183 -9.29077 -8.41631 -6.98929 -6.13954 -3.18453 -0.49602 0.27789 1.07694 1.19175 2.56858 3.13642 3.49812 3.54809 3.58685 3.72664 3.99053 4.13144 4.34674 4.39390 4.58264 4.98224 5.02487 5.06034 5.16013 5.25206 5.32810 5.38501 5.39256 5.58413 5.77153 6.05283 6.15085 6.19843 6.37865 6.47435 6.53353 6.90372 6.99677 7.25138 7.58970 7.77209 8.45231 8.96729 9.77065 10.31500 11.17515 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.004536 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.429840 B = 6171.397916 C = 7084.570770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.022 4.022 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.340 4.340 8 H 0.065 0.935 9 N -0.597 5.597 10 C 0.143 3.857 11 C -0.119 4.119 12 C 0.088 3.912 13 H 0.064 0.936 14 O -0.302 6.302 15 C 0.141 3.859 16 C 0.085 3.915 17 F -0.107 7.107 18 C -0.093 4.093 19 C -0.101 4.101 20 C -0.058 4.058 21 C -0.048 4.048 22 N 0.028 4.972 23 O -0.173 6.173 24 O -0.118 6.118 25 C 0.117 3.883 26 H 0.268 0.732 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.042 0.958 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 -20.743 0.247 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.224 4.224 3 Si 0.893 3.107 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.467 4.467 8 H 0.082 0.918 9 N -0.325 5.325 10 C 0.017 3.983 11 C -0.157 4.157 12 C 0.034 3.966 13 H 0.082 0.918 14 O -0.217 6.217 15 C 0.093 3.907 16 C 0.064 3.936 17 F -0.085 7.085 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.132 4.132 22 N 0.550 4.450 23 O -0.382 6.382 24 O -0.342 6.342 25 C -0.009 4.009 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.060 0.940 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.619 -19.063 0.582 19.412 hybrid contribution 0.083 -1.591 0.192 1.605 sum 3.701 -20.654 0.774 20.997 Atomic orbital electron populations 1.70788 1.06742 1.30137 1.47272 1.25796 0.96319 1.01154 0.99134 0.83552 0.74900 0.75970 0.76289 1.21010 1.21973 1.21952 1.19717 1.00562 0.88469 1.37954 0.91760 1.44452 1.41128 1.00001 1.46913 1.21653 0.91735 0.94208 0.90692 1.22976 1.01547 0.94350 0.96834 1.23701 0.91842 0.84420 0.96673 0.91765 1.86220 1.71115 1.17679 1.46723 1.18484 0.92024 0.88813 0.91389 1.17871 0.90873 0.88494 0.96326 1.91644 1.62699 1.61984 1.92164 1.21616 0.99595 0.91030 0.98946 1.21037 0.93645 1.00163 0.97157 1.21079 0.98815 0.94729 0.93057 1.21439 0.94550 0.99178 0.98034 1.43290 1.00573 1.00466 1.00702 1.94519 1.30823 1.40308 1.72592 1.94663 1.78875 1.14817 1.45838 1.21811 0.97280 0.86591 0.95262 0.92133 0.95279 0.92203 0.90047 0.90245 0.82341 0.82336 0.82041 0.93981 0.96068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.60 12.98 55.49 0.72 -26.88 16 2 C -0.02 -0.62 5.07 -17.43 -0.09 -0.71 16 3 Si 1.06 25.53 30.01 -169.99 -5.10 20.43 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.34 -9.80 9.98 -15.06 -0.15 -9.95 16 8 H 0.06 1.86 7.99 -52.49 -0.42 1.44 16 9 N -0.60 -15.67 3.27 -169.93 -0.56 -16.22 16 10 C 0.14 3.40 5.39 -2.41 -0.01 3.38 16 11 C -0.12 -2.32 6.41 -24.46 -0.16 -2.47 16 12 C 0.09 1.68 2.73 -24.90 -0.07 1.61 16 13 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 14 O -0.30 -5.31 7.99 -41.73 -0.33 -5.64 16 15 C 0.14 2.03 5.60 -39.18 -0.22 1.82 16 16 C 0.09 1.05 7.31 -39.30 -0.29 0.76 16 17 F -0.11 -1.56 15.96 2.25 0.04 -1.52 16 18 C -0.09 -0.72 10.02 -39.54 -0.40 -1.12 16 19 C -0.10 -0.62 10.04 -39.56 -0.40 -1.01 16 20 C -0.06 -0.49 9.55 -39.59 -0.38 -0.87 16 21 C -0.05 -0.62 6.86 -79.82 -0.55 -1.17 16 22 N 0.03 0.43 4.45 34.03 0.15 0.58 16 23 O -0.17 -2.53 18.45 -29.46 -0.54 -3.07 16 24 O -0.12 -2.01 15.93 -36.50 -0.58 -2.59 16 25 C 0.12 2.59 6.47 -3.06 -0.02 2.57 16 26 H 0.27 8.16 6.33 -40.82 -0.26 7.91 16 27 H 0.03 0.73 6.87 -51.93 -0.36 0.37 16 28 H 0.06 1.52 8.06 -51.93 -0.42 1.10 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.08 1.40 7.86 -51.93 -0.41 0.99 16 31 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 33 H 0.16 1.05 7.61 -52.49 -0.40 0.65 16 34 H 0.04 0.96 7.47 -51.93 -0.39 0.57 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -33.52 308.34 -7.83 -41.35 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -3.55 Total: -3.91 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.72 Total: -7.17 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.32 Total: -42.52 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.46 Total: -11.31 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.10 Total: 20.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.52 -7.83 -41.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226009821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.116 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds